Wall clock time and date at job start Mon Mar 30 2020 05:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41383 * 126.79905 * 2 1 4 4 C 1.35459 * 103.98136 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.77112 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.47254 * 90.00554 * 5 4 3 7 7 C 1.42890 * 114.00499 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47579 * 179.97438 * 7 6 5 9 9 O 1.20826 * 119.99621 * 0.02562 * 8 7 6 10 10 O 1.34228 * 120.00044 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99724 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47369 * 30.00703 * 11 10 8 13 13 C 1.53000 * 109.47224 * 270.00249 * 11 10 8 14 14 C 1.50701 * 109.47145 * 150.00326 * 11 10 8 15 15 H 1.08002 * 119.99894 * 5.63380 * 14 11 10 16 16 C 1.37874 * 120.00320 * 185.62433 * 14 11 10 17 17 N 1.31513 * 120.00316 * 197.18970 * 16 14 11 18 18 Si 1.86810 * 119.99684 * 17.46964 * 16 14 11 19 19 H 1.48496 * 109.46811 * 179.72411 * 18 16 14 20 20 H 1.48500 * 109.46683 * 299.71905 * 18 16 14 21 21 H 1.48497 * 109.47110 * 59.72249 * 18 16 14 22 22 O 1.34039 * 106.44857 * 0.24204 * 4 3 2 23 23 N 1.20922 * 111.56583 * 359.56391 * 22 4 3 24 24 H 1.09006 * 109.47175 * 90.00068 * 1 2 3 25 25 H 1.09001 * 109.47240 * 209.99976 * 1 2 3 26 26 H 1.09000 * 109.47356 * 330.00049 * 1 2 3 27 27 H 1.07992 * 128.01360 * 0.03474 * 3 2 1 28 28 H 1.08991 * 109.47881 * 330.00139 * 5 4 3 29 29 H 1.09001 * 109.46690 * 209.99812 * 5 4 3 30 30 H 1.08998 * 109.47038 * 59.99741 * 7 6 5 31 31 H 1.09002 * 109.47252 * 299.99935 * 7 6 5 32 32 H 1.08991 * 109.47526 * 306.33620 * 13 11 10 33 33 H 1.09001 * 109.46823 * 66.33767 * 13 11 10 34 34 H 1.09005 * 109.47333 * 186.33393 * 13 11 10 35 35 H 0.96989 * 119.99777 * 355.16928 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9021 1.3696 -0.0014 6 8 5.3137 1.6109 1.3456 7 6 6.5425 2.3314 1.4578 8 6 6.8781 2.5288 2.9136 9 8 6.1408 2.0963 3.7675 10 8 7.9967 3.1842 3.2616 11 6 8.2565 3.3365 4.6821 12 1 7.8302 2.4911 5.2222 13 6 7.6185 4.6345 5.1810 14 6 9.7441 3.3848 4.9183 15 1 10.4239 3.4004 4.0792 16 6 10.2373 3.4093 6.2056 17 7 11.4775 3.7865 6.4276 18 14 9.1463 2.8990 7.6336 19 1 9.9097 3.0069 8.9027 20 1 7.9595 3.7897 7.6926 21 1 8.7026 1.4951 7.4406 22 8 3.4538 -0.7253 -0.0063 23 7 2.2868 -1.0423 -0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 2.0710 2.1743 0.0005 28 1 4.7648 2.3210 -0.5152 29 1 5.6656 0.7859 -0.5155 30 1 6.4396 3.3028 0.9741 31 1 7.3400 1.7674 0.9740 32 1 7.9602 5.4671 4.5662 33 1 6.5334 4.5550 5.1142 34 1 7.9071 4.8061 6.2180 35 1 12.0663 3.9801 5.6816 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802084511.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:47 Heat of formation + Delta-G solvation = -70.053036 kcal Electronic energy + Delta-G solvation = -19774.914319 eV Core-core repulsion = 16356.195244 eV Total energy + Delta-G solvation = -3418.719075 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.15656 -39.85286 -38.13480 -35.84170 -35.04224 -33.30070 -32.91523 -30.61027 -28.97154 -28.69809 -26.42558 -24.93886 -23.33699 -21.83031 -20.56603 -19.75412 -18.02094 -17.94411 -17.59171 -17.03497 -16.58292 -16.42413 -15.72235 -15.08713 -14.91813 -13.94414 -13.87331 -13.68043 -13.36476 -13.16367 -12.92336 -12.86914 -12.68937 -12.14789 -12.05573 -11.68339 -11.56049 -11.40434 -10.58424 -10.26970 -10.14602 -10.07688 -10.03155 -9.83425 -9.76904 -9.66969 -8.98666 -8.38509 -6.67511 -4.28224 1.05368 1.92416 2.59150 2.73198 3.02908 3.31491 3.39728 3.54005 3.91597 3.97018 4.28437 4.34581 4.66002 4.71833 4.84822 4.99928 5.03137 5.08142 5.12032 5.14072 5.22500 5.36104 5.45246 5.47734 5.81446 6.16691 6.41698 6.42615 6.61850 6.70496 7.11431 7.31453 7.76493 8.00455 8.20751 8.42204 8.79204 9.39632 10.75656 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.038130 B = 0.003251 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.156024 B = 8609.882431 C = 8858.563375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.207 4.207 4 C -0.027 4.027 5 C 0.143 3.857 6 O -0.361 6.361 7 C 0.071 3.929 8 C 0.450 3.550 9 O -0.501 6.501 10 O -0.343 6.343 11 C 0.197 3.803 12 H 0.039 0.961 13 C -0.169 4.169 14 C -0.609 4.609 15 H 0.069 0.931 16 C 0.040 3.960 17 N -0.892 5.892 18 Si 1.038 2.962 19 H -0.278 1.278 20 H -0.271 1.271 21 H -0.278 1.278 22 O 0.109 5.891 23 N -0.360 5.360 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.175 0.825 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.300 -2.647 -15.707 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.148 4.148 3 C -0.228 4.228 4 C -0.091 4.091 5 C 0.065 3.935 6 O -0.280 6.280 7 C -0.006 4.006 8 C 0.292 3.708 9 O -0.390 6.390 10 O -0.259 6.259 11 C 0.143 3.857 12 H 0.057 0.943 13 C -0.227 4.227 14 C -0.646 4.646 15 H 0.087 0.913 16 C -0.166 4.166 17 N -0.525 5.525 18 Si 0.865 3.135 19 H -0.204 1.204 20 H -0.197 1.197 21 H -0.203 1.203 22 O 0.041 5.959 23 N -0.064 5.064 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.192 0.808 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.839 -4.258 -13.583 22.822 hybrid contribution 0.109 1.053 -1.803 2.090 sum -17.730 -3.205 -15.385 23.693 Atomic orbital electron populations 1.20171 0.85751 1.03999 1.03329 1.23639 0.99197 0.88756 1.03167 1.22498 0.91007 1.01369 1.07918 1.23930 0.97392 0.83872 1.03880 1.20648 0.89930 0.97716 0.85167 1.88045 1.39160 1.76364 1.24411 1.21748 0.87506 0.98357 0.93032 1.22867 0.80693 0.76273 0.91002 1.90636 1.49611 1.46546 1.52172 1.86518 1.38749 1.67301 1.33370 1.20935 0.97643 0.94246 0.72853 0.94316 1.22576 0.97908 0.99733 1.02486 1.21912 0.88923 1.58340 0.95438 0.91276 1.25677 0.98619 0.92906 0.99446 1.70870 1.07201 1.39301 1.35135 0.84145 0.75476 0.77734 0.76192 1.20368 1.19730 1.20345 1.84835 1.21564 1.22573 1.66968 1.73864 0.89305 1.24176 1.19027 0.90144 0.90469 0.89877 0.80794 0.89129 0.90104 0.88852 0.88660 0.92595 0.94983 0.90840 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.47 36.00 0.38 -0.15 16 2 C 0.01 0.12 7.33 -82.10 -0.60 -0.49 16 3 C -0.21 -2.04 11.06 -39.38 -0.44 -2.48 16 4 C -0.03 -0.30 7.12 -35.30 -0.25 -0.55 16 5 C 0.14 1.28 6.50 36.00 0.23 1.52 16 6 O -0.36 -4.99 9.86 -55.18 -0.54 -5.53 16 7 C 0.07 0.93 6.53 36.01 0.24 1.16 16 8 C 0.45 8.90 8.01 36.01 0.29 9.19 16 9 O -0.50 -11.65 15.72 -25.48 -0.40 -12.05 16 10 O -0.34 -7.73 9.86 -39.25 -0.39 -8.12 16 11 C 0.20 4.98 2.14 -27.88 -0.06 4.92 16 12 H 0.04 1.03 5.81 -51.93 -0.30 0.73 16 13 C -0.17 -3.87 9.22 37.16 0.34 -3.53 16 14 C -0.61 -17.29 9.16 -34.44 -0.32 -17.60 16 15 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 16 C 0.04 1.14 5.29 -17.82 -0.09 1.05 16 17 N -0.89 -26.72 13.70 55.43 0.76 -25.96 16 18 Si 1.04 25.02 26.29 -169.99 -4.47 20.55 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.05 5.76 56.52 0.33 -5.73 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 O 0.11 1.42 11.20 17.18 0.19 1.62 16 23 N -0.36 -4.77 12.07 33.42 0.40 -4.37 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.69 4.88 -51.93 -0.25 1.44 16 35 H 0.27 8.05 8.73 -40.82 -0.36 7.70 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -34.95 310.30 -4.48 -39.43 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -4.43 Total: -3.28 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.28 Total: -6.96 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 1.16 Total: -30.33 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -1.14 Total: -24.09 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -4.47 Total: 20.55 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.95 -4.48 -39.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802084511.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.620 kcal (2) G-P(sol) polarization free energy of solvation -34.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds