Wall clock time and date at job start Mon Mar 30 2020 05:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41383 * 126.79905 * 2 1 4 4 C 1.35459 * 103.98136 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.77112 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.47254 * 90.00554 * 5 4 3 7 7 C 1.42890 * 114.00499 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47579 * 179.97438 * 7 6 5 9 9 O 1.20826 * 119.99621 * 0.02562 * 8 7 6 10 10 O 1.34228 * 120.00044 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99724 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47369 * 30.00703 * 11 10 8 13 13 C 1.53000 * 109.47224 * 270.00249 * 11 10 8 14 14 C 1.50701 * 109.47145 * 150.00326 * 11 10 8 15 15 H 1.08002 * 119.99894 * 5.63380 * 14 11 10 16 16 C 1.37874 * 120.00320 * 185.62433 * 14 11 10 17 17 N 1.31513 * 120.00316 * 197.18970 * 16 14 11 18 18 Si 1.86810 * 119.99684 * 17.46964 * 16 14 11 19 19 H 1.48496 * 109.46811 * 179.72411 * 18 16 14 20 20 H 1.48500 * 109.46683 * 299.71905 * 18 16 14 21 21 H 1.48497 * 109.47110 * 59.72249 * 18 16 14 22 22 O 1.34039 * 106.44857 * 0.24204 * 4 3 2 23 23 N 1.20922 * 111.56583 * 359.56391 * 22 4 3 24 24 H 1.09006 * 109.47175 * 90.00068 * 1 2 3 25 25 H 1.09001 * 109.47240 * 209.99976 * 1 2 3 26 26 H 1.09000 * 109.47356 * 330.00049 * 1 2 3 27 27 H 1.07992 * 128.01360 * 0.03474 * 3 2 1 28 28 H 1.08991 * 109.47881 * 330.00139 * 5 4 3 29 29 H 1.09001 * 109.46690 * 209.99812 * 5 4 3 30 30 H 1.08998 * 109.47038 * 59.99741 * 7 6 5 31 31 H 1.09002 * 109.47252 * 299.99935 * 7 6 5 32 32 H 1.08991 * 109.47526 * 306.33620 * 13 11 10 33 33 H 1.09001 * 109.46823 * 66.33767 * 13 11 10 34 34 H 1.09005 * 109.47333 * 186.33393 * 13 11 10 35 35 H 0.96989 * 119.99777 * 355.16928 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9021 1.3696 -0.0014 6 8 5.3137 1.6109 1.3456 7 6 6.5425 2.3314 1.4578 8 6 6.8781 2.5288 2.9136 9 8 6.1408 2.0963 3.7675 10 8 7.9967 3.1842 3.2616 11 6 8.2565 3.3365 4.6821 12 1 7.8302 2.4911 5.2222 13 6 7.6185 4.6345 5.1810 14 6 9.7441 3.3848 4.9183 15 1 10.4239 3.4004 4.0792 16 6 10.2373 3.4093 6.2056 17 7 11.4775 3.7865 6.4276 18 14 9.1463 2.8990 7.6336 19 1 9.9097 3.0069 8.9027 20 1 7.9595 3.7897 7.6926 21 1 8.7026 1.4951 7.4406 22 8 3.4538 -0.7253 -0.0063 23 7 2.2868 -1.0423 -0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 2.0710 2.1743 0.0005 28 1 4.7648 2.3210 -0.5152 29 1 5.6656 0.7859 -0.5155 30 1 6.4396 3.3028 0.9741 31 1 7.3400 1.7674 0.9740 32 1 7.9602 5.4671 4.5662 33 1 6.5334 4.5550 5.1142 34 1 7.9071 4.8061 6.2180 35 1 12.0663 3.9801 5.6816 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802084511.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:46 Heat of formation + Delta-G solvation = -93.921079 kcal Electronic energy + Delta-G solvation = -19775.949315 eV Core-core repulsion = 16356.195244 eV Total energy + Delta-G solvation = -3419.754071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.97020 -41.43824 -39.16884 -37.55109 -35.79454 -35.38524 -33.73843 -32.54413 -29.81354 -29.60139 -27.29540 -26.96548 -24.12528 -23.55086 -21.58746 -21.22884 -19.91248 -19.00847 -18.73804 -18.23581 -17.72644 -17.58449 -17.02733 -16.39750 -15.96990 -15.61762 -14.94644 -14.91473 -14.55994 -14.27707 -14.20796 -14.03758 -13.72336 -13.67787 -13.33033 -13.29272 -12.82723 -12.51307 -12.17822 -12.09559 -11.78549 -11.65590 -11.38557 -11.05998 -11.00929 -10.88152 -10.60457 -10.56513 -8.94581 -6.56619 0.23554 1.14777 1.21363 1.39623 1.46741 1.55701 1.67469 2.07189 2.34190 2.89735 3.04202 3.23810 3.49498 3.72137 3.98204 4.08737 4.17797 4.22136 4.26978 4.30539 4.43652 4.52953 4.57104 4.61223 4.67616 4.84751 4.86939 4.88102 5.21744 5.29336 5.43580 5.78443 5.83393 5.93625 6.39292 6.86459 7.19986 7.20264 8.48154 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.038130 B = 0.003251 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.156024 B = 8609.882431 C = 8858.563375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.005 3.995 3 C -0.206 4.206 4 C -0.042 4.042 5 C 0.140 3.860 6 O -0.397 6.397 7 C 0.084 3.916 8 C 0.442 3.558 9 O -0.542 6.542 10 O -0.353 6.353 11 C 0.195 3.805 12 H 0.027 0.973 13 C -0.162 4.162 14 C -0.617 4.617 15 H 0.036 0.964 16 C -0.002 4.002 17 N -0.917 5.917 18 Si 1.071 2.929 19 H -0.272 1.272 20 H -0.241 1.241 21 H -0.273 1.273 22 O 0.081 5.919 23 N -0.397 5.397 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.204 0.796 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.290 -1.706 -16.745 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.153 4.153 3 C -0.227 4.227 4 C -0.105 4.105 5 C 0.064 3.936 6 O -0.317 6.317 7 C 0.007 3.993 8 C 0.286 3.714 9 O -0.432 6.432 10 O -0.270 6.270 11 C 0.140 3.860 12 H 0.044 0.956 13 C -0.220 4.220 14 C -0.655 4.655 15 H 0.055 0.945 16 C -0.202 4.202 17 N -0.551 5.551 18 Si 0.891 3.109 19 H -0.197 1.197 20 H -0.165 1.165 21 H -0.198 1.198 22 O 0.017 5.983 23 N -0.105 5.105 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.221 0.779 28 H 0.149 0.851 29 H 0.120 0.880 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.812 -3.303 -14.667 24.870 hybrid contribution 0.694 0.730 -1.618 1.906 sum -19.118 -2.573 -16.285 25.245 Atomic orbital electron populations 1.20345 0.83429 1.04778 1.04725 1.24346 1.00834 0.88626 1.01540 1.22953 0.90395 1.02477 1.06832 1.24503 0.98894 0.83337 1.03793 1.21049 0.89511 0.99734 0.83296 1.87972 1.39340 1.76842 1.27565 1.21862 0.88389 1.01158 0.87867 1.24246 0.78924 0.74389 0.93797 1.90613 1.50524 1.48002 1.54044 1.86489 1.40712 1.68258 1.31494 1.20667 0.95511 0.95058 0.74732 0.95562 1.22445 0.98839 0.98405 1.02266 1.22048 0.90665 1.58061 0.94697 0.94547 1.26953 0.99020 0.92061 1.02208 1.70973 1.08096 1.41296 1.34750 0.83743 0.75230 0.78274 0.73651 1.19729 1.16480 1.19808 1.84782 1.21706 1.23923 1.67903 1.73858 0.89796 1.25750 1.21107 0.88346 0.90841 0.87913 0.77920 0.85064 0.88032 0.84489 0.85729 0.91894 0.93129 0.91121 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.47 71.24 0.75 -0.17 16 2 C 0.00 0.10 7.33 43.58 0.32 0.42 16 3 C -0.21 -3.60 11.06 22.40 0.25 -3.35 16 4 C -0.04 -0.85 7.12 25.04 0.18 -0.67 16 5 C 0.14 2.05 6.50 71.24 0.46 2.51 16 6 O -0.40 -9.88 9.86 -129.90 -1.28 -11.16 16 7 C 0.08 1.89 6.53 71.24 0.47 2.36 16 8 C 0.44 16.76 8.01 71.24 0.57 17.33 16 9 O -0.54 -24.72 15.72 28.40 0.45 -24.27 16 10 O -0.35 -15.58 9.86 -51.39 -0.51 -16.08 16 11 C 0.19 9.74 2.14 29.85 0.06 9.80 16 12 H 0.03 1.39 5.81 -2.39 -0.01 1.38 16 13 C -0.16 -7.12 9.22 71.98 0.66 -6.45 16 14 C -0.62 -35.56 9.16 25.60 0.23 -35.32 16 15 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 16 C 0.00 -0.09 5.29 84.65 0.45 0.36 16 17 N -0.92 -55.83 13.70 21.45 0.29 -55.53 16 18 Si 1.07 49.71 26.29 68.60 1.80 51.52 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.24 -9.95 5.76 99.48 0.57 -9.38 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 22 O 0.08 2.11 11.20 71.64 0.80 2.92 16 23 N -0.40 -10.51 12.07 -49.55 -0.60 -11.10 16 24 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 28 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 34 H 0.07 3.11 4.88 -2.38 -0.01 3.10 16 35 H 0.26 15.93 8.73 -92.72 -0.81 15.12 16 Total: -1.00 -78.88 310.30 6.29 -72.59 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 0.93 Total: 4.32 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 4.40 Total: -13.18 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.30 Total: -66.64 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -0.54 Total: -48.60 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 1.80 Total: 51.52 kcal Total: -78.88 6.29 -72.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802084511.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.335 kcal (2) G-P(sol) polarization free energy of solvation -78.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds