Wall clock time and date at job start Mon Mar 30 2020 04:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99778 * 2 1 4 4 C 1.50701 * 109.46831 * 180.02562 * 3 2 1 5 5 C 1.33728 * 125.86834 * 90.00182 * 4 3 2 6 6 N 1.31279 * 115.88556 * 179.97438 * 5 4 3 7 7 C 1.30563 * 116.96006 * 0.02562 * 6 5 4 8 8 C 1.46756 * 125.48540 * 179.97438 * 7 6 5 9 9 N 1.30000 * 119.99961 * 0.02878 * 8 7 6 10 10 N 1.40095 * 119.99973 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00148 * 179.97438 * 10 9 8 12 12 H 1.08994 * 109.46898 * 29.99679 * 11 10 9 13 13 C 1.53008 * 109.46934 * 270.00048 * 11 10 9 14 14 C 1.50697 * 109.47056 * 150.00235 * 11 10 9 15 15 H 1.07992 * 120.00203 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99833 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00090 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00214 * 179.97438 * 16 14 11 19 19 H 1.48509 * 109.46847 * 89.99899 * 18 16 14 20 20 H 1.48494 * 109.47454 * 209.99945 * 18 16 14 21 21 H 1.48499 * 109.47155 * 330.00412 * 18 16 14 22 22 S 1.76174 * 109.03200 * 0.24159 * 7 6 5 23 23 H 1.08992 * 109.46973 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46890 * 299.99630 * 1 2 3 25 25 H 1.08998 * 109.46889 * 59.99467 * 1 2 3 26 26 H 1.08999 * 109.47187 * 60.00573 * 3 2 1 27 27 H 1.08993 * 109.47500 * 299.99841 * 3 2 1 28 28 H 1.08003 * 122.05656 * 0.02562 * 5 4 3 29 29 H 1.08000 * 119.99566 * 180.02562 * 8 7 6 30 30 H 0.97005 * 119.99954 * 359.97438 * 10 9 8 31 31 H 1.09002 * 109.46852 * 59.99901 * 13 11 10 32 32 H 1.08997 * 109.46767 * 179.97438 * 13 11 10 33 33 H 1.08994 * 109.47026 * 299.99552 * 13 11 10 34 34 H 0.97007 * 120.00272 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2932 1.1249 -1.0846 6 7 5.5822 1.0232 -0.8576 7 6 5.9628 0.9928 0.3909 8 6 7.3503 0.8828 0.8562 9 7 8.3207 0.8067 -0.0055 10 7 9.6452 0.7022 0.4387 11 6 10.7388 0.6159 -0.5323 12 1 10.4623 1.1530 -1.4396 13 6 11.0060 -0.8523 -0.8703 14 6 11.9827 1.2304 0.0560 15 1 11.9608 1.6442 1.0533 16 6 13.1485 1.2651 -0.6793 17 7 13.1751 0.7617 -1.8939 18 14 14.6902 2.0274 0.0497 19 1 15.4665 0.9842 0.7671 20 1 15.5209 2.6016 -1.0390 21 1 14.3089 3.1022 1.0008 22 16 4.5419 1.0973 1.4273 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.8882 1.1575 -2.0853 29 1 7.5651 0.8651 1.9145 30 1 9.8383 0.6870 1.3892 31 1 10.1063 -1.2967 -1.2958 32 1 11.8194 -0.9164 -1.5931 33 1 11.2825 -1.3894 0.0369 34 1 13.9954 0.7858 -2.4112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814883199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:56 Heat of formation + Delta-G solvation = 43.315344 kcal Electronic energy + Delta-G solvation = -16951.557009 eV Core-core repulsion = 14012.799579 eV Total energy + Delta-G solvation = -2938.757431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.41059 -37.99216 -36.56647 -34.16355 -32.11471 -30.99656 -28.49152 -26.92980 -25.79406 -25.22115 -24.12445 -21.93330 -20.44607 -18.91399 -18.05859 -16.91517 -16.71618 -15.94209 -15.88724 -15.46560 -15.01922 -14.47361 -14.21316 -13.98096 -13.27452 -12.85162 -12.67206 -12.49839 -12.44810 -11.78330 -11.51225 -11.29409 -11.10460 -10.89920 -10.67433 -10.31121 -10.27213 -10.03614 -9.75202 -9.43888 -9.28027 -9.09711 -8.85093 -8.53783 -7.02585 -6.17976 -4.27164 0.49822 1.30302 1.76992 2.47855 3.22161 3.28763 3.31049 3.39266 3.63546 3.72948 4.30879 4.40422 4.72349 4.81274 5.02231 5.04578 5.10305 5.14686 5.34790 5.37462 5.67250 5.82674 6.15700 6.52192 6.79229 6.81858 6.95659 7.07871 7.50693 7.68931 7.76562 7.93131 8.04139 8.19127 8.78095 9.10420 9.39567 10.87974 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.055973 B = 0.002885 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.121258 B = 9703.030241 C = 9894.186234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.147 3.853 4 C -0.250 4.250 5 C 0.076 3.924 6 N -0.464 5.464 7 C 0.173 3.827 8 C -0.018 4.018 9 N -0.133 5.133 10 N -0.602 5.602 11 C 0.293 3.707 12 H 0.047 0.953 13 C -0.151 4.151 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.274 1.274 22 S 0.090 5.910 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.171 0.829 29 H 0.122 0.878 30 H 0.372 0.628 31 H 0.015 0.985 32 H 0.092 0.908 33 H 0.027 0.973 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.151 0.726 5.721 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.069 3.931 4 C -0.372 4.372 5 C -0.078 4.078 6 N -0.180 5.180 7 C -0.102 4.102 8 C -0.226 4.226 9 N 0.046 4.954 10 N -0.339 5.339 11 C 0.191 3.809 12 H 0.065 0.935 13 C -0.210 4.210 14 C -0.573 4.573 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.521 5.521 18 Si 0.732 3.268 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 S 0.344 5.656 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.188 0.812 29 H 0.139 0.861 30 H 0.209 0.791 31 H 0.034 0.966 32 H 0.111 0.889 33 H 0.046 0.954 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.295 0.482 5.161 20.946 hybrid contribution 0.302 0.575 0.785 1.019 sum -19.993 1.057 5.946 20.885 Atomic orbital electron populations 1.22761 0.80829 1.02990 1.00019 1.88021 1.19632 1.27431 1.95413 1.20527 0.86237 0.85112 1.01237 1.25285 0.99125 1.17466 0.95345 1.21651 0.87359 0.98995 0.99801 1.66911 1.15418 1.17181 1.18497 1.25283 0.96015 0.99456 0.89441 1.22285 0.87765 1.16725 0.95822 1.74274 0.91885 0.99242 1.30006 1.49425 0.98844 1.76935 1.08746 1.18713 0.80792 0.93376 0.88031 0.93486 1.22209 1.00411 0.97559 1.00862 1.21189 0.94303 1.39760 1.02014 0.92045 1.24863 0.98856 0.95103 0.94777 1.69891 1.28072 1.44483 1.09676 0.86392 0.82300 0.79362 0.78733 1.20480 1.20970 1.19849 1.84703 0.99801 1.70187 1.10950 0.89449 0.94011 0.93887 0.92197 0.91165 0.81208 0.86071 0.79136 0.96585 0.88910 0.95358 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.16 10.69 -35.23 -0.38 -4.54 16 3 C 0.15 1.40 6.46 36.01 0.23 1.63 16 4 C -0.25 -3.12 6.22 -35.89 -0.22 -3.34 16 5 C 0.08 1.07 11.14 -19.37 -0.22 0.86 16 6 N -0.46 -8.16 10.52 -11.62 -0.12 -8.28 16 7 C 0.17 2.85 7.45 -14.65 -0.11 2.74 16 8 C -0.02 -0.31 11.03 -14.89 -0.16 -0.48 16 9 N -0.13 -2.81 11.43 32.02 0.37 -2.45 16 10 N -0.60 -13.14 6.10 -5.88 -0.04 -13.17 16 11 C 0.29 7.40 3.23 -69.08 -0.22 7.18 16 12 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.15 -3.70 9.29 37.16 0.35 -3.36 16 14 C -0.53 -14.09 8.74 -34.44 -0.30 -14.39 16 15 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 17 N -0.88 -24.46 11.32 55.43 0.63 -23.83 16 18 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 S 0.09 1.15 23.42 -107.50 -2.52 -1.37 16 23 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.17 1.96 8.06 -52.48 -0.42 1.53 16 29 H 0.12 1.74 8.03 -52.49 -0.42 1.32 16 30 H 0.37 7.27 8.58 -182.60 -1.57 5.71 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -30.11 316.18 -7.61 -37.72 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.65 Total: 1.79 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 0.36 Total: -6.13 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.84 Total: -47.73 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.38 Total: -4.54 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.52 Total: -1.37 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.11 -7.61 -37.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814883199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.030 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds