Wall clock time and date at job start Mon Mar 30 2020 04:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99778 * 2 1 4 4 C 1.50701 * 109.46831 * 180.02562 * 3 2 1 5 5 C 1.33728 * 125.86834 * 90.00182 * 4 3 2 6 6 N 1.31279 * 115.88556 * 179.97438 * 5 4 3 7 7 C 1.30563 * 116.96006 * 0.02562 * 6 5 4 8 8 C 1.46756 * 125.48540 * 179.97438 * 7 6 5 9 9 N 1.30000 * 119.99961 * 0.02878 * 8 7 6 10 10 N 1.40095 * 119.99973 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00148 * 179.97438 * 10 9 8 12 12 H 1.08994 * 109.46898 * 29.99679 * 11 10 9 13 13 C 1.53008 * 109.46934 * 270.00048 * 11 10 9 14 14 C 1.50697 * 109.47056 * 150.00235 * 11 10 9 15 15 H 1.07992 * 120.00203 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99833 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00090 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00214 * 179.97438 * 16 14 11 19 19 H 1.48509 * 109.46847 * 89.99899 * 18 16 14 20 20 H 1.48494 * 109.47454 * 209.99945 * 18 16 14 21 21 H 1.48499 * 109.47155 * 330.00412 * 18 16 14 22 22 S 1.76174 * 109.03200 * 0.24159 * 7 6 5 23 23 H 1.08992 * 109.46973 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46890 * 299.99630 * 1 2 3 25 25 H 1.08998 * 109.46889 * 59.99467 * 1 2 3 26 26 H 1.08999 * 109.47187 * 60.00573 * 3 2 1 27 27 H 1.08993 * 109.47500 * 299.99841 * 3 2 1 28 28 H 1.08003 * 122.05656 * 0.02562 * 5 4 3 29 29 H 1.08000 * 119.99566 * 180.02562 * 8 7 6 30 30 H 0.97005 * 119.99954 * 359.97438 * 10 9 8 31 31 H 1.09002 * 109.46852 * 59.99901 * 13 11 10 32 32 H 1.08997 * 109.46767 * 179.97438 * 13 11 10 33 33 H 1.08994 * 109.47026 * 299.99552 * 13 11 10 34 34 H 0.97007 * 120.00272 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2932 1.1249 -1.0846 6 7 5.5822 1.0232 -0.8576 7 6 5.9628 0.9928 0.3909 8 6 7.3503 0.8828 0.8562 9 7 8.3207 0.8067 -0.0055 10 7 9.6452 0.7022 0.4387 11 6 10.7388 0.6159 -0.5323 12 1 10.4623 1.1530 -1.4396 13 6 11.0060 -0.8523 -0.8703 14 6 11.9827 1.2304 0.0560 15 1 11.9608 1.6442 1.0533 16 6 13.1485 1.2651 -0.6793 17 7 13.1751 0.7617 -1.8939 18 14 14.6902 2.0274 0.0497 19 1 15.4665 0.9842 0.7671 20 1 15.5209 2.6016 -1.0390 21 1 14.3089 3.1022 1.0008 22 16 4.5419 1.0973 1.4273 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.8882 1.1575 -2.0853 29 1 7.5651 0.8651 1.9145 30 1 9.8383 0.6870 1.3892 31 1 10.1063 -1.2967 -1.2958 32 1 11.8194 -0.9164 -1.5931 33 1 11.2825 -1.3894 0.0369 34 1 13.9954 0.7858 -2.4112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814883199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:56 Heat of formation + Delta-G solvation = 22.075557 kcal Electronic energy + Delta-G solvation = -16952.478036 eV Core-core repulsion = 14012.799579 eV Total energy + Delta-G solvation = -2939.678457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54083 -38.76159 -38.14032 -35.94539 -33.62441 -32.37377 -29.93813 -27.88501 -27.32651 -26.76062 -25.16504 -23.22170 -22.28458 -20.22324 -19.17005 -18.58110 -17.43858 -17.30400 -17.14559 -16.66345 -16.32209 -15.71722 -15.42900 -15.26515 -14.73687 -14.52007 -14.19880 -13.49068 -13.42356 -13.29290 -12.92323 -12.73337 -12.57600 -12.32930 -12.25915 -12.21732 -12.10592 -11.25783 -11.02147 -10.74217 -10.60865 -10.54781 -10.37629 -10.02104 -8.58018 -8.18348 -6.35828 -0.66450 0.18373 0.67722 1.23178 1.44361 1.45031 1.55599 2.10967 2.17273 2.45803 2.98150 3.11146 3.24001 3.92524 4.06279 4.17984 4.41307 4.44487 4.56498 4.59893 4.69963 4.75138 4.91386 4.95055 5.00024 5.09985 5.24406 5.50465 5.71163 5.83162 6.10728 6.17268 6.32921 6.77878 6.82226 7.35209 7.62652 8.87219 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.055973 B = 0.002885 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.121258 B = 9703.030241 C = 9894.186234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.143 3.857 4 C -0.231 4.231 5 C 0.048 3.952 6 N -0.495 5.495 7 C 0.118 3.882 8 C 0.025 3.975 9 N -0.195 5.195 10 N -0.622 5.622 11 C 0.304 3.696 12 H 0.002 0.998 13 C -0.137 4.137 14 C -0.547 4.547 15 H 0.066 0.934 16 C 0.018 3.982 17 N -0.915 5.915 18 Si 0.974 3.026 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.268 1.268 22 S 0.165 5.835 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.189 0.811 29 H 0.153 0.847 30 H 0.380 0.620 31 H 0.015 0.985 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.519 1.326 7.594 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.065 3.935 4 C -0.354 4.354 5 C -0.105 4.105 6 N -0.212 5.212 7 C -0.156 4.156 8 C -0.186 4.186 9 N -0.011 5.011 10 N -0.360 5.360 11 C 0.201 3.799 12 H 0.020 0.980 13 C -0.197 4.197 14 C -0.586 4.586 15 H 0.084 0.916 16 C -0.183 4.183 17 N -0.553 5.553 18 Si 0.798 3.202 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.192 1.192 22 S 0.419 5.581 23 H 0.112 0.888 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.206 0.794 29 H 0.170 0.830 30 H 0.218 0.782 31 H 0.034 0.966 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.669 1.077 7.045 23.763 hybrid contribution 0.546 0.407 0.267 0.731 sum -22.123 1.484 7.313 23.347 Atomic orbital electron populations 1.22966 0.78725 1.03962 1.01432 1.87959 1.21930 1.27907 1.95733 1.20750 0.83936 0.85329 1.03482 1.25918 1.00998 1.13559 0.94958 1.21942 0.86528 1.00640 1.01386 1.66874 1.17592 1.16717 1.19995 1.25313 0.96835 1.02876 0.90616 1.22922 0.87751 1.10872 0.97066 1.74274 0.91930 1.03355 1.31554 1.48750 0.98743 1.80450 1.08081 1.18234 0.81786 0.92731 0.87181 0.98032 1.22027 0.99475 0.97691 1.00459 1.21491 0.94986 1.39855 1.02275 0.91572 1.25747 1.01979 0.95477 0.95086 1.70028 1.28883 1.45491 1.10923 0.85325 0.78311 0.78633 0.77930 1.19587 1.20858 1.19239 1.84413 0.96878 1.67668 1.09179 0.88834 0.92561 0.92474 0.90097 0.88805 0.79417 0.83023 0.78171 0.96556 0.91078 0.94595 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.63 10.69 -148.98 -1.59 -9.22 16 3 C 0.14 2.18 6.46 71.24 0.46 2.64 16 4 C -0.23 -5.12 6.22 24.66 0.15 -4.97 16 5 C 0.05 1.29 11.14 83.75 0.93 2.23 16 6 N -0.49 -17.25 10.52 -190.69 -2.01 -19.26 16 7 C 0.12 3.76 7.45 87.11 0.65 4.41 16 8 C 0.02 0.85 11.03 87.19 0.96 1.81 16 9 N -0.19 -8.48 11.43 -52.59 -0.60 -9.08 16 10 N -0.62 -28.10 6.10 -172.51 -1.05 -29.15 16 11 C 0.30 16.14 3.23 44.25 0.14 16.28 16 12 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 13 C -0.14 -7.01 9.29 71.98 0.67 -6.34 16 14 C -0.55 -29.64 8.74 25.60 0.22 -29.41 16 15 H 0.07 3.43 7.79 -2.91 -0.02 3.40 16 16 C 0.02 0.95 5.30 84.65 0.45 1.40 16 17 N -0.92 -52.21 11.32 21.45 0.24 -51.97 16 18 Si 0.97 42.41 29.54 68.60 2.03 44.43 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 S 0.16 3.72 23.42 -56.49 -1.32 2.40 16 23 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 28 H 0.19 4.08 8.06 -2.91 -0.02 4.05 16 29 H 0.15 4.08 8.03 -2.91 -0.02 4.06 16 30 H 0.38 15.18 8.58 -213.32 -1.83 13.35 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 33 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -67.50 316.18 0.86 -66.64 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -0.72 Total: 15.66 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 5.89 Total: -10.45 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -3.42 Total: -109.45 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -1.59 Total: -9.22 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.32 Total: 2.40 kcal Total: -67.50 0.86 -66.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814883199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.713 kcal (2) G-P(sol) polarization free energy of solvation -67.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds