Wall clock time and date at job start Mon Mar 30 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47113 * 2 1 4 4 N 1.28511 * 124.43567 * 90.02514 * 3 2 1 5 5 C 1.31120 * 109.07627 * 180.02562 * 4 3 2 6 6 C 1.40976 * 105.76877 * 359.97438 * 5 4 3 7 7 C 1.47675 * 127.24544 * 180.02562 * 6 5 4 8 8 O 1.21483 * 120.00024 * 0.02562 * 7 6 5 9 9 O 1.34705 * 120.00194 * 179.72385 * 7 6 5 10 10 C 1.45196 * 117.00323 * 180.27311 * 9 7 6 11 11 C 1.53001 * 109.47485 * 180.02562 * 10 9 7 12 12 O 1.42904 * 109.46879 * 65.00396 * 11 10 9 13 13 C 1.42897 * 113.99910 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47288 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99954 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00232 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00263 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99910 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46646 * 90.00370 * 18 16 14 20 20 H 1.48498 * 109.46878 * 210.00017 * 18 16 14 21 21 H 1.48496 * 109.47391 * 330.00252 * 18 16 14 22 22 N 1.28581 * 124.43639 * 270.33442 * 3 2 1 23 23 H 1.09001 * 109.46891 * 60.00626 * 1 2 3 24 24 H 1.09000 * 109.47036 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47477 * 300.00020 * 1 2 3 26 26 H 1.09003 * 109.47192 * 239.99676 * 2 1 3 27 27 H 1.09000 * 109.46729 * 119.99904 * 2 1 3 28 28 H 1.08001 * 127.11804 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47461 * 300.00612 * 10 9 7 30 30 H 1.09010 * 109.46796 * 60.00402 * 10 9 7 31 31 H 1.09001 * 109.47325 * 185.00657 * 11 10 9 32 32 H 1.09002 * 109.47147 * 305.00624 * 11 10 9 33 33 H 1.09000 * 109.47433 * 300.00380 * 13 12 11 34 34 H 1.09000 * 109.47160 * 59.99814 * 13 12 11 35 35 H 0.96990 * 120.00596 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2610 2.0662 1.0599 5 6 2.6818 3.2585 0.7126 6 6 2.6848 3.2681 -0.6971 7 6 3.0785 4.3825 -1.5825 8 8 3.4513 5.4354 -1.1046 9 8 3.0301 4.2297 -2.9199 10 6 3.4373 5.3649 -3.7284 11 6 3.3154 5.0054 -5.2106 12 8 1.9415 4.7835 -5.5354 13 6 1.7162 4.4391 -6.9038 14 6 0.2416 4.2284 -7.1325 15 1 -0.4540 4.3461 -6.3147 16 6 -0.2196 3.8852 -8.3857 17 7 -1.5065 3.7018 -8.5854 18 14 0.9834 3.6822 -9.8004 19 1 1.4470 2.2726 -9.8574 20 1 0.3105 4.0340 -11.0766 21 1 2.1487 4.5786 -9.5918 22 7 2.2549 2.0688 -1.0605 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9678 4.0659 1.3704 29 1 2.7950 6.2173 -3.5076 30 1 4.4721 5.6209 -3.5002 31 1 3.7043 5.8240 -5.8162 32 1 3.8874 4.1000 -5.4132 33 1 2.0720 5.2456 -7.5449 34 1 2.2550 3.5218 -7.1411 35 1 -1.8310 3.4607 -9.4671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815428909.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:10 Heat of formation + Delta-G solvation = -19.066651 kcal Electronic energy + Delta-G solvation = -19768.754266 eV Core-core repulsion = 16384.538878 eV Total energy + Delta-G solvation = -3384.215388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.89039 -40.15319 -37.21678 -36.12710 -35.14593 -32.94769 -32.66869 -30.90717 -30.17074 -27.63082 -25.73454 -24.27165 -22.38240 -21.86494 -21.77397 -20.90057 -17.96220 -17.60915 -17.11052 -16.87500 -16.48507 -16.27453 -15.34509 -15.23855 -14.81714 -14.50971 -14.39554 -13.54715 -13.30203 -12.95626 -12.61943 -12.51980 -12.43070 -12.16245 -11.77369 -11.71834 -11.21725 -11.15421 -10.92980 -10.73464 -10.65639 -10.57338 -10.49269 -9.87029 -9.72682 -9.19754 -8.89709 -8.49844 -6.11485 -4.10621 1.01824 1.68159 1.83163 2.64763 2.92384 3.24575 3.31375 3.32371 3.71490 4.35064 4.44826 4.46123 4.50029 4.64364 4.73364 4.86553 5.13568 5.18362 5.19657 5.32533 5.38514 5.45523 5.66978 5.70933 5.72349 5.80625 5.96348 6.28058 6.42328 6.56595 6.97803 7.58120 7.66021 7.94932 7.97328 8.64438 9.00292 9.47346 11.01633 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.004079 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.900403 B = 6863.619187 C = 8037.926194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.131 3.869 3 N -0.137 5.137 4 N -0.292 5.292 5 C 0.040 3.960 6 C -0.035 4.035 7 C 0.562 3.438 8 O -0.502 6.502 9 O -0.324 6.324 10 C 0.074 3.926 11 C 0.058 3.942 12 O -0.375 6.375 13 C 0.168 3.832 14 C -0.519 4.519 15 H 0.083 0.917 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.266 1.266 22 N -0.212 5.212 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.211 0.789 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.004 0.996 34 H 0.001 0.999 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.214 -5.594 17.515 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.013 3.987 3 N -0.042 5.042 4 N -0.130 5.130 5 C -0.143 4.143 6 C -0.196 4.196 7 C 0.403 3.597 8 O -0.389 6.389 9 O -0.238 6.238 10 C 0.000 4.000 11 C -0.020 4.020 12 O -0.294 6.294 13 C 0.093 3.907 14 C -0.557 4.557 15 H 0.101 0.899 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.191 1.191 22 N -0.061 5.061 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.228 0.772 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.022 0.978 34 H 0.018 0.982 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.586 -6.567 17.583 21.075 hybrid contribution 1.039 0.811 -1.061 1.692 sum 10.625 -5.756 16.521 20.469 Atomic orbital electron populations 1.22218 0.92534 1.04309 1.04178 1.22197 0.96581 0.73655 1.06298 1.48428 1.43008 1.13623 0.99109 1.74000 1.17880 1.05361 1.15808 1.24847 1.01172 0.95414 0.92895 1.21923 1.11242 0.93087 0.93310 1.19223 0.74230 0.84612 0.81642 1.90858 1.44194 1.26969 1.76837 1.86722 1.77693 1.42852 1.16522 1.23290 1.00342 0.87212 0.89119 1.22403 0.87548 1.00358 0.91703 1.87987 1.20920 1.90270 1.30241 1.20631 0.98233 0.93475 0.78333 1.20886 0.90180 1.47412 0.97191 0.89942 1.24762 0.95204 0.94761 0.98195 1.69872 1.12851 1.47566 1.23109 0.86846 0.81614 0.79097 0.82159 1.19898 1.20772 1.19090 1.74685 1.12311 1.04175 1.14959 0.90732 0.89225 0.91339 0.86705 0.86940 0.77237 0.89966 0.89925 0.91602 0.92953 0.97823 0.98160 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.13 0.95 7.24 -4.04 -0.03 0.92 16 3 N -0.14 -1.62 3.94 -10.61 -0.04 -1.66 16 4 N -0.29 -3.46 12.00 30.91 0.37 -3.08 16 5 C 0.04 0.48 12.04 -16.82 -0.20 0.27 16 6 C -0.04 -0.51 7.26 -82.70 -0.60 -1.12 16 7 C 0.56 9.01 7.97 34.58 0.28 9.29 16 8 O -0.50 -8.25 16.74 -19.25 -0.32 -8.57 16 9 O -0.32 -5.68 10.20 -43.28 -0.44 -6.13 16 10 C 0.07 1.14 5.85 37.16 0.22 1.36 16 11 C 0.06 1.00 6.33 37.16 0.24 1.23 16 12 O -0.38 -8.92 10.30 -38.79 -0.40 -9.32 16 13 C 0.17 4.31 4.76 36.00 0.17 4.48 16 14 C -0.52 -15.62 9.99 -34.44 -0.34 -15.97 16 15 H 0.08 2.73 8.06 -52.48 -0.42 2.31 16 16 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 17 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 18 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 22 N -0.21 -3.14 12.10 33.41 0.40 -2.74 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.21 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.00 0.10 7.20 -51.93 -0.37 -0.27 16 34 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 35 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 317.08 15.07 4.78 4.78 Total: -1.00 -35.97 317.08 -4.12 -40.09 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -4.58 Total: -4.78 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 0.01 Total: 1.70 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 1.51 Total: -34.48 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -1.16 Total: -24.01 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.97 -4.12 -40.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815428909.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.027 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds