Wall clock time and date at job start Mon Mar 30 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47113 * 2 1 4 4 N 1.28511 * 124.43567 * 90.02514 * 3 2 1 5 5 C 1.31120 * 109.07627 * 180.02562 * 4 3 2 6 6 C 1.40976 * 105.76877 * 359.97438 * 5 4 3 7 7 C 1.47675 * 127.24544 * 180.02562 * 6 5 4 8 8 O 1.21483 * 120.00024 * 0.02562 * 7 6 5 9 9 O 1.34705 * 120.00194 * 179.72385 * 7 6 5 10 10 C 1.45196 * 117.00323 * 180.27311 * 9 7 6 11 11 C 1.53001 * 109.47485 * 180.02562 * 10 9 7 12 12 O 1.42904 * 109.46879 * 65.00396 * 11 10 9 13 13 C 1.42897 * 113.99910 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47288 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99954 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00232 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00263 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99910 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46646 * 90.00370 * 18 16 14 20 20 H 1.48498 * 109.46878 * 210.00017 * 18 16 14 21 21 H 1.48496 * 109.47391 * 330.00252 * 18 16 14 22 22 N 1.28581 * 124.43639 * 270.33442 * 3 2 1 23 23 H 1.09001 * 109.46891 * 60.00626 * 1 2 3 24 24 H 1.09000 * 109.47036 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47477 * 300.00020 * 1 2 3 26 26 H 1.09003 * 109.47192 * 239.99676 * 2 1 3 27 27 H 1.09000 * 109.46729 * 119.99904 * 2 1 3 28 28 H 1.08001 * 127.11804 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47461 * 300.00612 * 10 9 7 30 30 H 1.09010 * 109.46796 * 60.00402 * 10 9 7 31 31 H 1.09001 * 109.47325 * 185.00657 * 11 10 9 32 32 H 1.09002 * 109.47147 * 305.00624 * 11 10 9 33 33 H 1.09000 * 109.47433 * 300.00380 * 13 12 11 34 34 H 1.09000 * 109.47160 * 59.99814 * 13 12 11 35 35 H 0.96990 * 120.00596 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2610 2.0662 1.0599 5 6 2.6818 3.2585 0.7126 6 6 2.6848 3.2681 -0.6971 7 6 3.0785 4.3825 -1.5825 8 8 3.4513 5.4354 -1.1046 9 8 3.0301 4.2297 -2.9199 10 6 3.4373 5.3649 -3.7284 11 6 3.3154 5.0054 -5.2106 12 8 1.9415 4.7835 -5.5354 13 6 1.7162 4.4391 -6.9038 14 6 0.2416 4.2284 -7.1325 15 1 -0.4540 4.3461 -6.3147 16 6 -0.2196 3.8852 -8.3857 17 7 -1.5065 3.7018 -8.5854 18 14 0.9834 3.6822 -9.8004 19 1 1.4470 2.2726 -9.8574 20 1 0.3105 4.0340 -11.0766 21 1 2.1487 4.5786 -9.5918 22 7 2.2549 2.0688 -1.0605 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9678 4.0659 1.3704 29 1 2.7950 6.2173 -3.5076 30 1 4.4721 5.6209 -3.5002 31 1 3.7043 5.8240 -5.8162 32 1 3.8874 4.1000 -5.4132 33 1 2.0720 5.2456 -7.5449 34 1 2.2550 3.5218 -7.1411 35 1 -1.8310 3.4607 -9.4671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815428909.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:10 Heat of formation + Delta-G solvation = -45.757738 kcal Electronic energy + Delta-G solvation = -19769.911679 eV Core-core repulsion = 16384.538878 eV Total energy + Delta-G solvation = -3385.372801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.84939 -41.39938 -38.82668 -37.51966 -35.90695 -34.89862 -33.92441 -32.02601 -31.40515 -29.60541 -26.75140 -25.14119 -24.05042 -23.57630 -22.65919 -22.03950 -19.14413 -19.01345 -18.62809 -18.14092 -17.74394 -17.53465 -16.93124 -16.43469 -16.30456 -16.02878 -15.19609 -14.99924 -14.67735 -14.38835 -13.98238 -13.75063 -13.40126 -13.20256 -13.08269 -13.00658 -12.66059 -12.43031 -12.33107 -12.13203 -11.91087 -11.87153 -11.75285 -11.66205 -11.35939 -10.93517 -10.65466 -10.40789 -8.37324 -6.46024 -0.08799 0.73973 0.97576 1.34395 1.38151 1.48901 1.59079 1.77822 2.30189 2.77005 2.95162 2.96551 3.58290 3.79289 3.88032 3.91394 3.97837 4.12999 4.21399 4.37905 4.46402 4.50859 4.56847 4.63361 4.69699 4.70343 4.88655 4.99698 5.13810 5.18695 5.42378 5.45174 5.90917 6.46321 6.57877 6.71233 6.96130 7.18335 8.80199 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.004079 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.900403 B = 6863.619187 C = 8037.926194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.128 5.128 4 N -0.292 5.292 5 C 0.048 3.952 6 C -0.062 4.062 7 C 0.563 3.437 8 O -0.511 6.511 9 O -0.348 6.348 10 C 0.072 3.928 11 C 0.049 3.951 12 O -0.409 6.409 13 C 0.179 3.821 14 C -0.550 4.550 15 H 0.025 0.975 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.959 3.041 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.240 1.240 22 N -0.242 5.242 23 H 0.044 0.956 24 H 0.119 0.881 25 H 0.063 0.937 26 H 0.126 0.874 27 H 0.145 0.855 28 H 0.239 0.761 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.021 0.979 34 H 0.014 0.986 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.586 -6.201 17.301 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.001 3.999 3 N -0.034 5.034 4 N -0.131 5.131 5 C -0.135 4.135 6 C -0.221 4.221 7 C 0.405 3.595 8 O -0.398 6.398 9 O -0.263 6.263 10 C -0.001 4.001 11 C -0.027 4.027 12 O -0.329 6.329 13 C 0.103 3.897 14 C -0.587 4.587 15 H 0.043 0.957 16 C -0.185 4.185 17 N -0.583 5.583 18 Si 0.779 3.221 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.164 1.164 22 N -0.093 5.093 23 H 0.064 0.936 24 H 0.138 0.862 25 H 0.082 0.918 26 H 0.144 0.856 27 H 0.163 0.837 28 H 0.255 0.745 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.031 0.969 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.970 -7.163 17.400 22.301 hybrid contribution 0.204 0.949 -0.856 1.294 sum 12.174 -6.214 16.544 21.460 Atomic orbital electron populations 1.22199 0.92330 1.05733 1.02438 1.22717 0.96730 0.71961 1.08491 1.48948 1.41581 1.14469 0.98403 1.74014 1.17921 1.05421 1.15700 1.25315 1.00084 0.96010 0.92046 1.21953 1.12834 0.93025 0.94249 1.19399 0.73876 0.84978 0.81240 1.90832 1.44828 1.27363 1.76794 1.86706 1.78185 1.43878 1.17508 1.23432 1.02314 0.86397 0.87928 1.22792 0.84456 1.02185 0.93288 1.87930 1.25264 1.90544 1.29187 1.20362 0.95033 0.94487 0.79801 1.21182 0.92311 1.48865 0.96372 0.95679 1.25888 0.97554 0.93505 1.01591 1.70038 1.15593 1.48229 1.24468 0.85563 0.79161 0.80180 0.77148 1.18403 1.19850 1.16355 1.74627 1.13285 1.04834 1.16548 0.93629 0.86235 0.91779 0.85588 0.83723 0.74478 0.90625 0.86192 0.88474 0.91731 0.96130 0.96872 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 71.98 0.74 -1.46 16 2 C 0.12 1.54 7.24 86.38 0.63 2.17 16 3 N -0.13 -2.93 3.94 -187.49 -0.74 -3.67 16 4 N -0.29 -6.56 12.00 -56.14 -0.67 -7.23 16 5 C 0.05 1.09 12.04 85.47 1.03 2.12 16 6 C -0.06 -1.81 7.26 42.21 0.31 -1.51 16 7 C 0.56 18.09 7.97 70.32 0.56 18.66 16 8 O -0.51 -16.53 16.74 19.89 0.33 -16.20 16 9 O -0.35 -12.25 10.20 -53.49 -0.55 -12.80 16 10 C 0.07 2.15 5.85 71.98 0.42 2.58 16 11 C 0.05 1.62 6.33 71.98 0.46 2.08 16 12 O -0.41 -19.52 10.30 -145.58 -1.50 -21.02 16 13 C 0.18 9.02 4.76 71.24 0.34 9.36 16 14 C -0.55 -34.15 9.99 25.60 0.26 -33.90 16 15 H 0.02 1.77 8.06 -2.91 -0.02 1.75 16 16 C 0.01 0.74 5.47 84.65 0.46 1.20 16 17 N -0.94 -60.04 13.96 21.45 0.30 -59.74 16 18 Si 0.96 43.14 27.47 68.60 1.88 45.02 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 22 N -0.24 -7.22 12.10 -48.20 -0.58 -7.81 16 23 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.14 0.96 8.14 -2.39 -0.02 0.95 16 28 H 0.24 3.67 8.06 -2.91 -0.02 3.65 16 29 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 31 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 34 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 35 H 0.27 15.88 8.31 -92.72 -0.77 15.11 16 Total: -1.00 -81.08 317.08 4.71 -76.37 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.04 Total: 5.78 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 5.19 Total: 1.29 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -1.70 Total: -78.45 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -1.71 Total: -50.02 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.02 kcal Total: -81.08 4.71 -76.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815428909.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.616 kcal (2) G-P(sol) polarization free energy of solvation -81.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds