Wall clock time and date at job start Mon Mar 30 2020 05:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99948 * 2 1 4 4 H 1.48499 * 109.46731 * 269.99366 * 3 2 1 5 5 H 1.48491 * 109.47221 * 29.99486 * 3 2 1 6 6 H 1.48501 * 109.47067 * 149.99823 * 3 2 1 7 7 C 1.38949 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99405 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00652 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00465 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99882 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00039 * 179.97438 * 10 9 7 13 13 O 1.45199 * 109.46937 * 179.97438 * 12 10 9 14 14 C 1.34804 * 117.00042 * 179.97438 * 13 12 10 15 15 O 1.21530 * 119.99861 * 359.97438 * 14 13 12 16 16 C 1.46947 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.33084 * 120.00089 * 180.02562 * 16 14 13 18 18 C 1.50702 * 120.00238 * 179.72729 * 17 16 14 19 19 H 1.08990 * 109.86837 * 358.98904 * 18 17 16 20 20 C 1.54096 * 109.88072 * 119.99678 * 18 17 16 21 21 C 1.54813 * 104.18611 * 121.45267 * 20 18 17 22 22 C 1.54992 * 102.09288 * 20.88154 * 21 20 18 23 23 O 1.43744 * 109.87517 * 237.83100 * 18 17 16 24 24 H 0.97000 * 119.99598 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99639 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.47315 * 59.99933 * 12 10 9 27 27 H 1.09002 * 109.47266 * 299.99133 * 12 10 9 28 28 H 1.08000 * 120.00595 * 359.97438 * 16 14 13 29 29 H 1.08005 * 119.99772 * 359.97438 * 17 16 14 30 30 H 1.08989 * 110.49142 * 240.12697 * 20 18 17 31 31 H 1.09005 * 110.48666 * 2.64700 * 20 18 17 32 32 H 1.09001 * 110.90829 * 139.07975 * 21 20 18 33 33 H 1.09003 * 110.91114 * 262.68227 * 21 20 18 34 34 H 1.09000 * 110.61840 * 81.47609 * 22 21 20 35 35 H 1.09006 * 110.61733 * 204.31776 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3705 0.0011 13 8 6.0447 -3.7395 0.0017 14 6 7.3811 -3.9161 0.0012 15 8 8.1214 -2.9523 -0.0001 16 6 7.9427 -5.2740 0.0024 17 6 9.2621 -5.4485 0.0024 18 6 9.8381 -6.8410 0.0098 19 1 9.0327 -7.5749 0.0326 20 6 10.7070 -7.0554 -1.2446 21 6 12.1047 -7.4109 -0.6818 22 6 11.7651 -7.8883 0.7531 23 8 10.6908 -7.0111 1.1545 24 1 -0.4849 0.8401 -0.0004 25 1 3.8648 -0.3633 0.0007 26 1 5.9241 -1.8567 0.8910 27 1 5.9241 -1.8568 -0.8890 28 1 7.2849 -6.1306 0.0040 29 1 9.9200 -4.5919 0.0012 30 1 10.3164 -7.8780 -1.8433 31 1 10.7533 -6.1417 -1.8373 32 1 12.5644 -8.2126 -1.2598 33 1 12.7492 -6.5322 -0.6571 34 1 11.4305 -8.9256 0.7434 35 1 12.6263 -7.7701 1.4108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821409382.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:16 Heat of formation + Delta-G solvation = -144.827874 kcal Electronic energy + Delta-G solvation = -19309.207548 eV Core-core repulsion = 15887.245993 eV Total energy + Delta-G solvation = -3421.961555 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35613 -39.81423 -38.32311 -36.26986 -34.17357 -34.04520 -32.46235 -31.78583 -29.51069 -28.34659 -24.94794 -23.91652 -22.42602 -21.44634 -19.86945 -19.60388 -18.56667 -18.00458 -16.89156 -16.42397 -16.32237 -16.21653 -15.52770 -15.29638 -14.84035 -14.14630 -14.08657 -13.70971 -13.63333 -12.99122 -12.53819 -12.50194 -12.25874 -12.18872 -12.15942 -11.92662 -11.70490 -11.25367 -11.19162 -10.63848 -10.57051 -10.50249 -10.22246 -10.03652 -9.85502 -9.66207 -8.65124 -8.27883 -6.37863 -3.90680 0.87651 2.62091 2.87522 3.00264 3.04699 3.13236 3.57320 3.60881 4.04810 4.06086 4.18930 4.42218 4.46651 4.64205 4.73383 4.86099 4.98556 5.07069 5.12713 5.23423 5.28165 5.32882 5.38753 5.49830 5.56971 5.60105 5.69025 5.92278 6.07513 6.41474 6.50310 7.46307 7.80436 8.02444 8.49465 8.85175 9.31390 9.67341 10.74434 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.057295 B = 0.002744 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.583282 B =10200.998616 C =10463.517258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.580 5.580 10 C 0.448 3.552 11 O -0.557 6.557 12 C 0.058 3.942 13 O -0.319 6.319 14 C 0.493 3.507 15 O -0.517 6.517 16 C -0.164 4.164 17 C -0.063 4.063 18 C 0.100 3.900 19 H 0.084 0.916 20 C -0.150 4.150 21 C -0.156 4.156 22 C 0.044 3.956 23 O -0.366 6.366 24 H 0.275 0.725 25 H 0.373 0.627 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.144 0.856 29 H 0.135 0.865 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.046 -11.543 -1.793 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.220 5.220 10 C 0.233 3.767 11 O -0.438 6.438 12 C -0.020 4.020 13 O -0.233 6.233 14 C 0.338 3.662 15 O -0.408 6.408 16 C -0.183 4.183 17 C -0.082 4.082 18 C 0.043 3.957 19 H 0.102 0.898 20 C -0.187 4.187 21 C -0.193 4.193 22 C -0.032 4.032 23 O -0.285 6.285 24 H 0.086 0.914 25 H 0.206 0.794 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.162 0.838 29 H 0.152 0.848 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 23.548 -11.740 -1.586 26.360 hybrid contribution 0.590 1.520 -0.203 1.643 sum 24.139 -10.220 -1.790 26.274 Atomic orbital electron populations 1.69616 1.05646 1.27738 1.48457 1.25040 0.95529 0.98067 0.97296 0.86672 0.79875 0.83849 0.79076 1.19422 1.19956 1.19333 1.19425 0.78681 0.96880 1.48614 0.86009 1.42033 1.07636 1.05708 1.66629 1.19194 0.86940 0.85132 0.85434 1.90605 1.69048 1.30726 1.53465 1.22757 0.95113 0.80456 1.03645 1.86657 1.22570 1.31103 1.82990 1.21502 0.81133 0.90552 0.72992 1.90836 1.60684 1.42815 1.46459 1.21975 0.95886 0.94489 1.05981 1.23700 0.95272 0.98320 0.90871 1.21851 0.93817 0.93754 0.86296 0.89822 1.22993 0.94814 1.03444 0.97475 1.23166 0.97245 1.02359 0.96558 1.23608 0.90336 0.94029 0.95272 1.88973 1.38612 1.67947 1.32947 0.91403 0.79375 0.89340 0.89345 0.83809 0.84765 0.89826 0.89732 0.89893 0.90209 0.91834 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.30 13.96 55.50 0.77 -24.52 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.19 27.74 -169.99 -4.71 14.48 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 7 C -0.31 -8.69 10.16 -14.94 -0.15 -8.84 16 8 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 9 N -0.58 -13.95 5.09 -10.96 -0.06 -14.00 16 10 C 0.45 10.56 7.86 -10.99 -0.09 10.48 16 11 O -0.56 -15.54 16.08 -14.11 -0.23 -15.76 16 12 C 0.06 1.07 5.96 36.00 0.21 1.28 16 13 O -0.32 -5.92 9.77 -47.46 -0.46 -6.38 16 14 C 0.49 7.81 7.91 34.26 0.27 8.08 16 15 O -0.52 -8.95 16.01 -19.29 -0.31 -9.26 16 16 C -0.16 -1.96 9.76 -37.85 -0.37 -2.33 16 17 C -0.06 -0.65 8.52 -36.10 -0.31 -0.96 16 18 C 0.10 0.83 3.80 -27.31 -0.10 0.73 16 19 H 0.08 0.61 7.83 -51.93 -0.41 0.21 16 20 C -0.15 -0.91 6.63 -25.20 -0.17 -1.07 16 21 C -0.16 -0.80 7.15 -24.72 -0.18 -0.98 16 22 C 0.04 0.27 7.72 38.21 0.29 0.57 16 23 O -0.37 -3.59 11.17 -35.23 -0.39 -3.99 16 24 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 26 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.14 1.45 7.88 -52.49 -0.41 1.04 16 29 H 0.13 1.46 7.49 -52.48 -0.39 1.07 16 30 H 0.08 0.40 8.14 -51.94 -0.42 -0.03 16 31 H 0.08 0.52 7.69 -51.93 -0.40 0.12 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 310.85 15.07 4.68 4.68 Total: -1.00 -34.51 310.85 -5.75 -40.25 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.36 Total: 6.42 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -0.68 Total: 8.08 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.72 Total: -38.53 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -1.39 Total: -35.39 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.51 -5.75 -40.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821409382.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.574 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds