Wall clock time and date at job start Mon Mar 30 2020 05:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99948 * 2 1 4 4 H 1.48499 * 109.46731 * 269.99366 * 3 2 1 5 5 H 1.48491 * 109.47221 * 29.99486 * 3 2 1 6 6 H 1.48501 * 109.47067 * 149.99823 * 3 2 1 7 7 C 1.38949 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99405 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00652 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00465 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99882 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00039 * 179.97438 * 10 9 7 13 13 O 1.45199 * 109.46937 * 179.97438 * 12 10 9 14 14 C 1.34804 * 117.00042 * 179.97438 * 13 12 10 15 15 O 1.21530 * 119.99861 * 359.97438 * 14 13 12 16 16 C 1.46947 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.33084 * 120.00089 * 180.02562 * 16 14 13 18 18 C 1.50702 * 120.00238 * 179.72729 * 17 16 14 19 19 H 1.08990 * 109.86837 * 358.98904 * 18 17 16 20 20 C 1.54096 * 109.88072 * 119.99678 * 18 17 16 21 21 C 1.54813 * 104.18611 * 121.45267 * 20 18 17 22 22 C 1.54992 * 102.09288 * 20.88154 * 21 20 18 23 23 O 1.43744 * 109.87517 * 237.83100 * 18 17 16 24 24 H 0.97000 * 119.99598 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99639 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.47315 * 59.99933 * 12 10 9 27 27 H 1.09002 * 109.47266 * 299.99133 * 12 10 9 28 28 H 1.08000 * 120.00595 * 359.97438 * 16 14 13 29 29 H 1.08005 * 119.99772 * 359.97438 * 17 16 14 30 30 H 1.08989 * 110.49142 * 240.12697 * 20 18 17 31 31 H 1.09005 * 110.48666 * 2.64700 * 20 18 17 32 32 H 1.09001 * 110.90829 * 139.07975 * 21 20 18 33 33 H 1.09003 * 110.91114 * 262.68227 * 21 20 18 34 34 H 1.09000 * 110.61840 * 81.47609 * 22 21 20 35 35 H 1.09006 * 110.61733 * 204.31776 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3705 0.0011 13 8 6.0447 -3.7395 0.0017 14 6 7.3811 -3.9161 0.0012 15 8 8.1214 -2.9523 -0.0001 16 6 7.9427 -5.2740 0.0024 17 6 9.2621 -5.4485 0.0024 18 6 9.8381 -6.8410 0.0098 19 1 9.0327 -7.5749 0.0326 20 6 10.7070 -7.0554 -1.2446 21 6 12.1047 -7.4109 -0.6818 22 6 11.7651 -7.8883 0.7531 23 8 10.6908 -7.0111 1.1545 24 1 -0.4849 0.8401 -0.0004 25 1 3.8648 -0.3633 0.0007 26 1 5.9241 -1.8567 0.8910 27 1 5.9241 -1.8568 -0.8890 28 1 7.2849 -6.1306 0.0040 29 1 9.9200 -4.5919 0.0012 30 1 10.3164 -7.8780 -1.8433 31 1 10.7533 -6.1417 -1.8373 32 1 12.5644 -8.2126 -1.2598 33 1 12.7492 -6.5322 -0.6571 34 1 11.4305 -8.9256 0.7434 35 1 12.6263 -7.7701 1.4108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821409382.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:15 Heat of formation + Delta-G solvation = -169.351295 kcal Electronic energy + Delta-G solvation = -19310.270964 eV Core-core repulsion = 15887.245993 eV Total energy + Delta-G solvation = -3423.024970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.63933 -40.48978 -40.15238 -37.64822 -36.10432 -35.04701 -33.88289 -32.97999 -30.66066 -29.49031 -26.64251 -25.04055 -23.05830 -22.16444 -21.56808 -20.82092 -20.50938 -19.17045 -18.03548 -17.72864 -17.54401 -17.12071 -16.88116 -16.54997 -16.01319 -15.81079 -15.39026 -14.76052 -14.54954 -14.31097 -14.21650 -14.06734 -13.85408 -13.11120 -13.01614 -12.73977 -12.64592 -12.47274 -12.14988 -12.01427 -11.90274 -11.79420 -11.60730 -11.60355 -10.88341 -10.64772 -10.63448 -10.35751 -8.47242 -6.10613 -0.09987 1.28518 1.32711 1.34778 1.45058 1.72039 1.78889 2.19398 2.75237 3.05883 3.06953 3.48961 3.62002 3.79746 3.87423 3.94790 4.07101 4.08857 4.11695 4.17962 4.37735 4.43412 4.77848 4.83801 4.96371 5.00157 5.08148 5.18802 5.23980 5.24460 5.46292 5.83592 5.87735 6.44127 6.58403 6.75611 7.23743 7.75508 8.69334 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.057295 B = 0.002744 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.583282 B =10200.998616 C =10463.517258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.962 3.038 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.232 1.232 7 C -0.334 4.334 8 H 0.061 0.939 9 N -0.575 5.575 10 C 0.448 3.552 11 O -0.609 6.609 12 C 0.067 3.933 13 O -0.342 6.342 14 C 0.494 3.506 15 O -0.535 6.535 16 C -0.183 4.183 17 C -0.037 4.037 18 C 0.096 3.904 19 H 0.095 0.905 20 C -0.148 4.148 21 C -0.151 4.151 22 C 0.036 3.964 23 O -0.395 6.395 24 H 0.283 0.717 25 H 0.393 0.607 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.160 0.840 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.249 -10.729 -2.138 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.208 4.208 3 Si 0.782 3.218 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.156 1.156 7 C -0.463 4.463 8 H 0.079 0.921 9 N -0.217 5.217 10 C 0.235 3.765 11 O -0.494 6.494 12 C -0.010 4.010 13 O -0.257 6.257 14 C 0.341 3.659 15 O -0.427 6.427 16 C -0.202 4.202 17 C -0.056 4.056 18 C 0.038 3.962 19 H 0.113 0.887 20 C -0.186 4.186 21 C -0.189 4.189 22 C -0.039 4.039 23 O -0.315 6.315 24 H 0.092 0.908 25 H 0.230 0.770 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.178 0.822 29 H 0.146 0.854 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 26.785 -10.934 -1.932 28.995 hybrid contribution -0.380 1.123 -0.088 1.188 sum 26.405 -9.811 -2.020 28.241 Atomic orbital electron populations 1.69782 1.08064 1.29602 1.48955 1.26105 0.96493 1.02676 0.95525 0.85403 0.79535 0.76685 0.80210 1.17834 1.19592 1.15556 1.19006 0.80704 0.95374 1.51216 0.92129 1.41807 1.06149 1.06981 1.66758 1.20166 0.89301 0.84052 0.82985 1.90579 1.70944 1.32645 1.55203 1.22617 0.90663 0.81375 1.06334 1.86655 1.24390 1.31032 1.83638 1.22080 0.79897 0.91809 0.72081 1.90817 1.60576 1.43663 1.47686 1.21975 0.96598 0.92969 1.08668 1.23903 0.94514 0.99514 0.87631 1.21998 0.94535 0.92434 0.87188 0.88693 1.23029 0.94961 1.04093 0.96502 1.23174 0.96714 1.02958 0.96009 1.23843 0.89797 0.94165 0.96128 1.88938 1.39751 1.68907 1.33893 0.90769 0.77041 0.86660 0.86360 0.82244 0.85421 0.88102 0.89912 0.87822 0.90462 0.90600 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.94 13.96 21.66 0.30 -54.63 16 2 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 3 Si 0.96 38.23 27.74 68.60 1.90 40.14 16 4 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 7 C -0.33 -19.56 10.16 84.04 0.85 -18.70 16 8 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 9 N -0.58 -27.51 5.09 -306.99 -1.56 -29.08 16 10 C 0.45 21.23 7.86 87.66 0.69 21.92 16 11 O -0.61 -35.33 16.08 15.73 0.25 -35.08 16 12 C 0.07 2.36 5.96 71.23 0.42 2.79 16 13 O -0.34 -12.44 9.77 -50.77 -0.50 -12.94 16 14 C 0.49 15.10 7.91 70.10 0.55 15.65 16 15 O -0.54 -17.69 16.01 19.74 0.32 -17.37 16 16 C -0.18 -4.15 9.76 23.40 0.23 -3.92 16 17 C -0.04 -0.70 8.52 24.53 0.21 -0.50 16 18 C 0.10 1.41 3.80 30.22 0.11 1.52 16 19 H 0.10 1.19 7.83 -2.39 -0.02 1.17 16 20 C -0.15 -1.43 6.63 31.58 0.21 -1.22 16 21 C -0.15 -1.16 7.15 31.89 0.23 -0.93 16 22 C 0.04 0.37 7.72 72.66 0.56 0.93 16 23 O -0.39 -7.12 11.17 -148.98 -1.66 -8.78 16 24 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.39 15.43 5.76 -92.71 -0.53 14.90 16 26 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 27 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 28 H 0.16 3.04 7.88 -2.91 -0.02 3.02 16 29 H 0.13 2.62 7.49 -2.91 -0.02 2.60 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.84 7.69 -2.38 -0.02 0.82 16 32 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -79.17 310.85 4.11 -75.06 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.52 Total: 25.11 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 4.54 Total: 17.57 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.26 Total: -83.71 kcal Atomic # 8 Polarization: -72.58 SS G_CDS: -1.59 Total: -74.17 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.14 kcal Total: -79.17 4.11 -75.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821409382.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.289 kcal (2) G-P(sol) polarization free energy of solvation -79.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds