Wall clock time and date at job start Mon Mar 30 2020 05:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00024 * 3 2 1 6 6 H 1.48492 * 109.46854 * 60.00181 * 3 2 1 7 7 C 1.38956 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99970 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99953 * 0.27300 * 10 9 7 12 12 C 1.50706 * 119.99766 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.46954 * 179.97438 * 12 10 9 14 14 C 1.34796 * 117.00201 * 179.97438 * 13 12 10 15 15 O 1.21529 * 119.99814 * 0.02562 * 14 13 12 16 16 C 1.46948 * 120.00174 * 179.97438 * 14 13 12 17 17 C 1.33085 * 120.00230 * 180.02562 * 16 14 13 18 18 C 1.50703 * 120.00149 * 180.02562 * 17 16 14 19 19 H 1.09002 * 110.32655 * 245.70183 * 18 17 16 20 20 C 1.54471 * 110.37208 * 123.45242 * 18 17 16 21 21 C 1.54510 * 104.06360 * 217.19096 * 20 18 17 22 22 C 1.54485 * 104.05900 * 359.97438 * 21 20 18 23 23 O 1.44419 * 110.37133 * 7.94776 * 18 17 16 24 24 H 0.97005 * 120.00019 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99986 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.47161 * 299.99737 * 12 10 9 27 27 H 1.09001 * 109.46740 * 59.99879 * 12 10 9 28 28 H 1.08003 * 119.99816 * 359.97438 * 16 14 13 29 29 H 1.07997 * 119.99530 * 0.02562 * 17 16 14 30 30 H 1.09007 * 110.50920 * 335.83068 * 20 18 17 31 31 H 1.08995 * 110.51328 * 98.40807 * 20 18 17 32 32 H 1.08998 * 110.51694 * 118.63997 * 21 20 18 33 33 H 1.09001 * 110.51170 * 241.35763 * 21 20 18 34 34 H 1.08998 * 110.37273 * 142.81462 * 22 21 20 35 35 H 1.09007 * 110.36871 * 265.15072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2101 -3.5579 0.0043 12 6 1.2437 -4.8630 -0.0022 13 8 2.1872 -5.9666 -0.0027 14 6 1.6720 -7.2123 -0.0027 15 8 0.4672 -7.3715 -0.0028 16 6 2.5671 -8.3777 -0.0038 17 6 2.0585 -9.6075 -0.0043 18 6 2.9765 -10.8026 -0.0048 19 1 2.8736 -11.3587 -0.9366 20 6 2.6710 -11.7158 1.2030 21 6 4.0597 -12.2255 1.6491 22 6 5.0399 -11.5603 0.6575 23 8 4.3461 -10.3846 0.1826 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3907 -0.0016 26 1 0.6167 -4.9209 0.8876 27 1 0.6173 -4.9204 -0.8924 28 1 3.6378 -8.2361 -0.0049 29 1 0.9878 -9.7489 -0.0044 30 1 2.1984 -11.1458 2.0030 31 1 2.0352 -12.5482 0.9014 32 1 4.2737 -11.9074 2.6695 33 1 4.1125 -13.3111 1.5674 34 1 5.9612 -11.2776 1.1667 35 1 5.2552 -12.2335 -0.1724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821409383.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:19 Heat of formation + Delta-G solvation = -151.860161 kcal Electronic energy + Delta-G solvation = -19403.570436 eV Core-core repulsion = 15981.303938 eV Total energy + Delta-G solvation = -3422.266498 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24319 -39.72717 -38.09720 -36.10845 -33.96199 -33.85735 -32.48750 -31.34543 -29.37763 -28.11265 -24.97282 -24.15003 -22.31597 -21.35521 -19.56580 -19.38884 -18.04731 -17.81865 -16.77087 -16.39328 -16.20535 -16.17247 -15.51705 -15.25462 -14.50485 -14.19062 -13.95724 -13.94326 -13.40786 -13.07813 -12.44680 -12.28259 -12.17705 -11.97750 -11.78131 -11.60165 -11.59187 -11.12730 -11.09252 -10.43046 -10.36293 -10.35032 -10.31218 -10.26075 -9.61601 -9.57982 -8.47818 -8.04852 -6.46932 -3.88670 1.05305 2.81245 3.05260 3.14386 3.26029 3.34040 3.43849 3.78006 4.10291 4.19159 4.32693 4.48667 4.63253 4.80479 4.86731 5.03361 5.07928 5.18380 5.22725 5.27951 5.31570 5.41722 5.56194 5.60936 5.64798 5.74688 5.97714 6.10266 6.22253 6.50775 6.66438 7.51154 7.90119 8.01151 8.52463 9.10646 9.43130 9.93406 10.70522 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.048277 B = 0.002807 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.848473 B = 9971.848056 C =10400.956572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.554 5.554 10 C 0.439 3.561 11 O -0.574 6.574 12 C 0.060 3.940 13 O -0.319 6.319 14 C 0.490 3.510 15 O -0.520 6.520 16 C -0.156 4.156 17 C -0.077 4.077 18 C 0.099 3.901 19 H 0.091 0.909 20 C -0.146 4.146 21 C -0.156 4.156 22 C 0.044 3.956 23 O -0.366 6.366 24 H 0.273 0.727 25 H 0.395 0.605 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 -23.516 1.445 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.179 4.179 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.430 4.430 8 H 0.124 0.876 9 N -0.192 5.192 10 C 0.224 3.776 11 O -0.458 6.458 12 C -0.017 4.017 13 O -0.233 6.233 14 C 0.336 3.664 15 O -0.412 6.412 16 C -0.175 4.175 17 C -0.095 4.095 18 C 0.042 3.958 19 H 0.108 0.892 20 C -0.184 4.184 21 C -0.193 4.193 22 C -0.033 4.033 23 O -0.285 6.285 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.168 0.832 29 H 0.159 0.841 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.566 -23.129 1.411 23.445 hybrid contribution -0.551 0.694 0.046 0.888 sum 3.015 -22.435 1.457 22.684 Atomic orbital electron populations 1.69626 1.06000 1.28324 1.49939 1.25314 0.95691 0.99859 0.96991 0.85738 0.79725 0.80761 0.77769 1.19082 1.20644 1.20643 1.19782 0.93511 0.81758 1.47928 0.87567 1.41710 1.09363 1.04086 1.64016 1.19337 0.88341 0.84094 0.85817 1.90566 1.13429 1.86790 1.55039 1.22752 0.90881 0.84610 1.03496 1.86662 1.39839 1.14014 1.82832 1.21637 0.87454 0.84385 0.72912 1.90820 1.16469 1.87184 1.46743 1.21976 1.01030 0.89683 1.04789 1.23642 1.00207 0.92645 0.93025 1.21996 0.82303 0.92917 0.98622 0.89180 1.22929 0.97978 0.99379 0.98103 1.22952 0.94538 1.01095 1.00746 1.23455 0.96284 0.87278 0.96278 1.89219 1.19700 1.32552 1.87003 0.91719 0.77163 0.89509 0.89513 0.83236 0.84067 0.90014 0.89897 0.90357 0.90340 0.88720 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 8 H 0.11 3.12 7.16 -52.49 -0.38 2.75 16 9 N -0.55 -14.37 5.29 -10.96 -0.06 -14.43 16 10 C 0.44 10.98 7.86 -10.98 -0.09 10.89 16 11 O -0.57 -16.53 16.08 -14.11 -0.23 -16.76 16 12 C 0.06 1.21 5.96 36.01 0.21 1.42 16 13 O -0.32 -6.43 9.77 -47.44 -0.46 -6.89 16 14 C 0.49 8.41 7.91 34.26 0.27 8.68 16 15 O -0.52 -9.51 16.01 -19.29 -0.31 -9.82 16 16 C -0.16 -2.12 9.52 -37.85 -0.36 -2.48 16 17 C -0.08 -0.81 9.00 -36.10 -0.32 -1.14 16 18 C 0.10 0.83 3.83 -27.11 -0.10 0.73 16 19 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 20 C -0.15 -0.93 6.62 -25.17 -0.17 -1.10 16 21 C -0.16 -0.88 7.09 -25.16 -0.18 -1.06 16 22 C 0.04 0.30 7.63 37.94 0.29 0.59 16 23 O -0.37 -3.78 9.87 -35.23 -0.35 -4.13 16 24 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 26 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.15 2.05 6.97 -52.48 -0.37 1.69 16 29 H 0.14 1.40 7.49 -52.49 -0.39 1.01 16 30 H 0.08 0.58 7.87 -51.92 -0.41 0.17 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -33.67 312.34 -6.06 -39.73 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.38 Total: 6.85 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.69 Total: 8.48 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.67 Total: -38.16 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -1.35 Total: -37.60 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.67 -6.06 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821409383.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.130 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds