Wall clock time and date at job start Mon Mar 30 2020 05:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00024 * 3 2 1 6 6 H 1.48492 * 109.46854 * 60.00181 * 3 2 1 7 7 C 1.38956 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99970 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99953 * 0.27300 * 10 9 7 12 12 C 1.50706 * 119.99766 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.46954 * 179.97438 * 12 10 9 14 14 C 1.34796 * 117.00201 * 179.97438 * 13 12 10 15 15 O 1.21529 * 119.99814 * 0.02562 * 14 13 12 16 16 C 1.46948 * 120.00174 * 179.97438 * 14 13 12 17 17 C 1.33085 * 120.00230 * 180.02562 * 16 14 13 18 18 C 1.50703 * 120.00149 * 180.02562 * 17 16 14 19 19 H 1.09002 * 110.32655 * 245.70183 * 18 17 16 20 20 C 1.54471 * 110.37208 * 123.45242 * 18 17 16 21 21 C 1.54510 * 104.06360 * 217.19096 * 20 18 17 22 22 C 1.54485 * 104.05900 * 359.97438 * 21 20 18 23 23 O 1.44419 * 110.37133 * 7.94776 * 18 17 16 24 24 H 0.97005 * 120.00019 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99986 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.47161 * 299.99737 * 12 10 9 27 27 H 1.09001 * 109.46740 * 59.99879 * 12 10 9 28 28 H 1.08003 * 119.99816 * 359.97438 * 16 14 13 29 29 H 1.07997 * 119.99530 * 0.02562 * 17 16 14 30 30 H 1.09007 * 110.50920 * 335.83068 * 20 18 17 31 31 H 1.08995 * 110.51328 * 98.40807 * 20 18 17 32 32 H 1.08998 * 110.51694 * 118.63997 * 21 20 18 33 33 H 1.09001 * 110.51170 * 241.35763 * 21 20 18 34 34 H 1.08998 * 110.37273 * 142.81462 * 22 21 20 35 35 H 1.09007 * 110.36871 * 265.15072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2101 -3.5579 0.0043 12 6 1.2437 -4.8630 -0.0022 13 8 2.1872 -5.9666 -0.0027 14 6 1.6720 -7.2123 -0.0027 15 8 0.4672 -7.3715 -0.0028 16 6 2.5671 -8.3777 -0.0038 17 6 2.0585 -9.6075 -0.0043 18 6 2.9765 -10.8026 -0.0048 19 1 2.8736 -11.3587 -0.9366 20 6 2.6710 -11.7158 1.2030 21 6 4.0597 -12.2255 1.6491 22 6 5.0399 -11.5603 0.6575 23 8 4.3461 -10.3846 0.1826 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3907 -0.0016 26 1 0.6167 -4.9209 0.8876 27 1 0.6173 -4.9204 -0.8924 28 1 3.6378 -8.2361 -0.0049 29 1 0.9878 -9.7489 -0.0044 30 1 2.1984 -11.1458 2.0030 31 1 2.0352 -12.5482 0.9014 32 1 4.2737 -11.9074 2.6695 33 1 4.1125 -13.3111 1.5674 34 1 5.9612 -11.2776 1.1667 35 1 5.2552 -12.2335 -0.1724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821409383.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:19 Heat of formation + Delta-G solvation = -174.459907 kcal Electronic energy + Delta-G solvation = -19404.550435 eV Core-core repulsion = 15981.303938 eV Total energy + Delta-G solvation = -3423.246497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.60400 -40.46606 -40.01805 -37.60720 -36.05738 -34.80112 -33.44007 -33.04116 -30.55035 -29.39748 -26.73390 -25.24282 -23.18713 -22.02467 -21.46491 -20.49724 -20.09271 -19.09600 -17.92814 -17.71370 -17.50931 -17.20492 -16.77933 -16.47129 -16.06406 -15.75228 -15.70796 -14.76545 -14.70233 -14.11602 -13.99917 -13.76235 -13.58280 -13.07854 -12.95367 -12.72208 -12.56147 -12.48402 -12.16586 -12.11464 -11.89698 -11.79703 -11.60484 -11.49986 -10.98427 -10.54525 -10.48085 -10.13801 -8.54057 -6.04870 -0.02098 1.33581 1.36920 1.45527 1.59283 1.81149 1.86817 2.29370 2.83863 3.01156 3.11210 3.48933 3.75236 3.79533 4.00419 4.05820 4.13085 4.14298 4.19662 4.28094 4.33256 4.51377 4.75262 4.84610 4.98126 5.07346 5.10966 5.19370 5.26163 5.27863 5.35780 5.87140 5.89633 6.43701 6.60799 7.01080 7.37303 7.91240 8.63324 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.048277 B = 0.002807 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.848473 B = 9971.848056 C =10400.956572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 1.000 3.000 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.339 4.339 8 H 0.083 0.917 9 N -0.557 5.557 10 C 0.435 3.565 11 O -0.619 6.619 12 C 0.071 3.929 13 O -0.344 6.344 14 C 0.493 3.507 15 O -0.537 6.537 16 C -0.191 4.191 17 C -0.035 4.035 18 C 0.092 3.908 19 H 0.116 0.884 20 C -0.143 4.143 21 C -0.152 4.152 22 C 0.036 3.964 23 O -0.399 6.399 24 H 0.281 0.719 25 H 0.401 0.599 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.143 0.857 29 H 0.153 0.847 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -24.986 1.459 25.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.823 3.177 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.101 0.899 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.506 6.506 12 C -0.006 4.006 13 O -0.259 6.259 14 C 0.341 3.659 15 O -0.429 6.429 16 C -0.210 4.210 17 C -0.053 4.053 18 C 0.035 3.965 19 H 0.133 0.867 20 C -0.181 4.181 21 C -0.189 4.189 22 C -0.040 4.040 23 O -0.319 6.319 24 H 0.091 0.909 25 H 0.235 0.765 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.161 0.839 29 H 0.170 0.830 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.964 -24.620 1.428 24.839 hybrid contribution -0.397 1.016 0.042 1.092 sum 2.567 -23.604 1.470 23.788 Atomic orbital electron populations 1.69679 1.06962 1.29736 1.49135 1.26156 0.96621 1.02627 0.95578 0.84776 0.78009 0.76436 0.78526 1.19634 1.19320 1.19309 1.19764 0.92928 0.83375 1.50686 0.89868 1.41738 1.09569 1.04141 1.63969 1.20111 0.88063 0.85432 0.84182 1.90527 1.15567 1.87712 1.56794 1.22542 0.90163 0.82476 1.05447 1.86660 1.40546 1.15097 1.83589 1.22173 0.87833 0.83916 0.72019 1.90797 1.17031 1.87081 1.48021 1.21799 1.00209 0.89360 1.09668 1.24056 1.01285 0.92349 0.87603 1.22277 0.81335 0.92085 1.00776 0.86674 1.22953 0.98799 0.99549 0.96779 1.22958 0.93541 1.02337 1.00077 1.23670 0.96457 0.86694 0.97226 1.89201 1.20701 1.34541 1.87431 0.90894 0.76492 0.87445 0.87423 0.83901 0.82964 0.90923 0.87333 0.90762 0.88059 0.88645 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.28 13.05 21.66 0.28 -48.99 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 1.00 42.73 29.55 68.60 2.03 44.75 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 8 H 0.08 5.10 7.16 -2.91 -0.02 5.07 16 9 N -0.56 -29.49 5.29 -306.98 -1.62 -31.12 16 10 C 0.44 22.33 7.86 87.66 0.69 23.02 16 11 O -0.62 -37.00 16.08 15.74 0.25 -36.75 16 12 C 0.07 2.86 5.96 71.24 0.42 3.29 16 13 O -0.34 -14.10 9.77 -50.69 -0.50 -14.59 16 14 C 0.49 16.96 7.91 70.10 0.55 17.51 16 15 O -0.54 -19.28 16.01 19.74 0.32 -18.96 16 16 C -0.19 -5.20 9.52 23.40 0.22 -4.98 16 17 C -0.03 -0.68 9.00 24.53 0.22 -0.46 16 18 C 0.09 1.34 3.83 30.35 0.12 1.45 16 19 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 20 C -0.14 -1.42 6.62 31.61 0.21 -1.21 16 21 C -0.15 -1.32 7.09 31.61 0.22 -1.10 16 22 C 0.04 0.43 7.63 72.49 0.55 0.98 16 23 O -0.40 -7.80 9.87 -148.98 -1.47 -9.27 16 24 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 25 H 0.40 19.89 7.90 -92.71 -0.73 19.16 16 26 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 27 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 28 H 0.14 4.06 6.97 -2.91 -0.02 4.04 16 29 H 0.15 2.67 7.49 -2.91 -0.02 2.65 16 30 H 0.07 0.86 7.87 -2.38 -0.02 0.85 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -73.50 312.34 4.17 -69.33 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.38 Total: 25.77 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 4.49 Total: 19.83 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -1.34 Total: -80.11 kcal Atomic # 8 Polarization: -78.18 SS G_CDS: -1.40 Total: -79.57 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -73.50 4.17 -69.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821409383.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.126 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds