Wall clock time and date at job start Mon Mar 30 2020 05:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 120.00177 * 2 1 4 4 H 1.48504 * 109.47057 * 270.00113 * 3 2 1 5 5 H 1.48504 * 109.46768 * 30.00022 * 3 2 1 6 6 H 1.48499 * 109.47019 * 150.00047 * 3 2 1 7 7 C 1.38951 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99296 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99804 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99694 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99986 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.47119 * 180.02562 * 12 10 9 14 14 C 1.34801 * 117.00076 * 179.97438 * 13 12 10 15 15 O 1.21540 * 119.99577 * 359.97438 * 14 13 12 16 16 C 1.46948 * 119.99898 * 180.02562 * 14 13 12 17 17 C 1.33082 * 119.99971 * 173.56082 * 16 14 13 18 18 C 1.50705 * 119.99767 * 345.09738 * 17 16 14 19 19 H 1.08995 * 110.27633 * 351.62675 * 18 17 16 20 20 C 1.54947 * 110.31059 * 113.72082 * 18 17 16 21 21 C 1.55302 * 100.98278 * 155.43637 * 20 18 17 22 22 C 1.54440 * 102.22773 * 325.92208 * 21 20 18 23 23 O 1.43238 * 107.60828 * 21.29254 * 22 21 20 24 24 H 0.97004 * 119.99964 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00480 * 359.97438 * 9 7 2 26 26 H 1.08993 * 109.46910 * 59.99587 * 12 10 9 27 27 H 1.09007 * 109.46903 * 299.99822 * 12 10 9 28 28 H 1.07995 * 120.00180 * 353.54739 * 16 14 13 29 29 H 1.07997 * 120.00357 * 165.10000 * 17 16 14 30 30 H 1.08999 * 111.12043 * 273.38033 * 20 18 17 31 31 H 1.08995 * 111.12222 * 37.49627 * 20 18 17 32 32 H 1.09007 * 110.84937 * 84.07386 * 21 20 18 33 33 H 1.08994 * 110.84879 * 207.69772 * 21 20 18 34 34 H 1.09003 * 109.78419 * 261.79652 * 22 21 20 35 35 H 1.08998 * 109.93143 * 140.87529 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5578 -0.0002 12 6 1.2437 -4.8629 -0.0022 13 8 2.1872 -5.9666 -0.0015 14 6 1.6719 -7.2122 -0.0013 15 8 0.4670 -7.3714 -0.0013 16 6 2.5671 -8.3776 0.0000 17 6 2.0641 -9.6029 0.1294 18 6 0.6464 -9.7890 0.6057 19 1 0.2312 -8.8372 0.9370 20 6 -0.2257 -10.3921 -0.5240 21 6 -1.3502 -11.0738 0.3022 22 6 -0.5917 -11.5410 1.5638 23 8 0.5986 -10.7515 1.6710 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 -0.0016 26 1 0.6173 -4.9204 -0.8923 27 1 0.6166 -4.9208 0.8876 28 1 3.6331 -8.2398 -0.1043 29 1 2.6717 -10.4638 -0.1069 30 1 -0.6298 -9.6109 -1.1679 31 1 0.3348 -11.1251 -1.1042 32 1 -2.1297 -10.3574 0.5617 33 1 -1.7672 -11.9240 -0.2376 34 1 -0.3292 -12.5946 1.4676 35 1 -1.2135 -11.3941 2.4469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821409385.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:26 Heat of formation + Delta-G solvation = -140.107610 kcal Electronic energy + Delta-G solvation = -19791.595813 eV Core-core repulsion = 16369.838944 eV Total energy + Delta-G solvation = -3421.756869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53408 -39.43040 -38.14660 -36.29508 -34.00057 -33.89095 -32.24443 -31.37976 -29.27711 -28.15330 -24.93776 -23.83207 -22.05233 -21.79530 -19.86950 -19.53041 -18.09542 -17.71313 -16.87559 -16.51219 -16.23927 -15.81571 -15.45784 -14.79643 -14.38189 -14.17307 -13.93292 -13.83105 -13.32395 -13.24379 -12.78039 -12.36803 -12.02779 -11.96475 -11.81733 -11.61869 -11.50565 -11.19806 -11.11934 -10.48130 -10.43973 -10.40537 -10.29308 -9.63083 -9.59880 -9.36755 -8.51901 -8.08065 -6.49834 -3.91761 0.89906 2.77502 2.83273 3.13595 3.23730 3.30214 3.74034 3.78104 4.11953 4.25153 4.44567 4.64628 4.66262 4.90355 5.00279 5.11237 5.15243 5.18412 5.23856 5.46815 5.51282 5.51710 5.68741 5.69814 5.70739 5.85124 5.93821 6.02636 6.19830 6.68717 6.81764 7.48085 7.82002 7.95994 8.48924 9.07441 9.39597 9.89691 10.67448 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.046114 B = 0.003064 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.042912 B = 9135.175478 C = 9511.730410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.319 6.319 14 C 0.488 3.512 15 O -0.512 6.512 16 C -0.174 4.174 17 C -0.055 4.055 18 C 0.071 3.929 19 H 0.126 0.874 20 C -0.140 4.140 21 C -0.155 4.155 22 C 0.052 3.948 23 O -0.381 6.381 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.139 0.861 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 -20.322 -0.485 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.017 4.017 13 O -0.233 6.233 14 C 0.335 3.665 15 O -0.405 6.405 16 C -0.193 4.193 17 C -0.074 4.074 18 C 0.015 3.985 19 H 0.143 0.857 20 C -0.178 4.178 21 C -0.193 4.193 22 C -0.025 4.025 23 O -0.301 6.301 24 H 0.084 0.916 25 H 0.228 0.772 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.168 0.832 29 H 0.157 0.843 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.523 -20.167 -0.321 20.327 hybrid contribution -0.519 0.814 -0.206 0.987 sum -3.042 -19.354 -0.527 19.598 Atomic orbital electron populations 1.69615 1.06003 1.28473 1.49731 1.25312 0.95687 0.99862 0.96899 0.85798 0.79246 0.80414 0.78495 1.20261 1.20809 1.19264 1.19729 0.93490 0.81768 1.48148 0.87614 1.41702 1.09358 1.04087 1.63881 1.19332 0.88345 0.84096 0.85947 1.90566 1.13430 1.86788 1.55176 1.22754 0.90852 0.84578 1.03508 1.86665 1.39913 1.14024 1.82738 1.21720 0.87462 0.84313 0.72960 1.90675 1.16675 1.86350 1.46757 1.22063 1.00367 0.89530 1.07316 1.23762 0.96562 0.96737 0.90332 1.23041 0.92783 0.95212 0.87449 0.85721 1.23147 0.96264 1.00373 0.97968 1.23129 0.98688 1.01213 0.96228 1.23112 0.86384 0.95130 0.97866 1.88417 1.42467 1.50062 1.49179 0.91636 0.77161 0.89472 0.89480 0.83195 0.84346 0.89137 0.90663 0.90206 0.90043 0.91533 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 8 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.55 -14.03 5.29 -10.96 -0.06 -14.08 16 10 C 0.44 10.63 7.86 -10.98 -0.09 10.55 16 11 O -0.58 -16.16 16.08 -14.11 -0.23 -16.39 16 12 C 0.06 1.16 5.96 36.01 0.21 1.37 16 13 O -0.32 -6.01 9.77 -47.45 -0.46 -6.47 16 14 C 0.49 7.65 7.73 34.26 0.26 7.91 16 15 O -0.51 -8.32 13.03 -19.30 -0.25 -8.57 16 16 C -0.17 -2.08 10.13 -37.85 -0.38 -2.46 16 17 C -0.06 -0.58 9.26 -36.10 -0.33 -0.91 16 18 C 0.07 0.83 2.97 -26.85 -0.08 0.76 16 19 H 0.13 1.77 4.88 -52.56 -0.26 1.52 16 20 C -0.14 -1.32 6.55 -24.48 -0.16 -1.48 16 21 C -0.15 -1.25 7.02 -24.76 -0.17 -1.42 16 22 C 0.05 0.46 7.80 37.91 0.30 0.76 16 23 O -0.38 -4.66 11.03 -35.23 -0.39 -5.05 16 24 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 26 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 28 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.60 8.05 -51.93 -0.42 0.19 16 32 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 308.96 15.07 4.66 4.66 Total: -1.00 -32.37 308.96 -6.03 -38.40 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.31 Total: 8.04 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.68 Total: 7.12 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.67 Total: -37.45 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -1.33 Total: -36.47 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.37 -6.03 -38.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821409385.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.710 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds