Wall clock time and date at job start Mon Mar 30 2020 05:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 120.00177 * 2 1 4 4 H 1.48504 * 109.47057 * 270.00113 * 3 2 1 5 5 H 1.48504 * 109.46768 * 30.00022 * 3 2 1 6 6 H 1.48499 * 109.47019 * 150.00047 * 3 2 1 7 7 C 1.38951 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99296 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99804 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99694 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99986 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.47119 * 180.02562 * 12 10 9 14 14 C 1.34801 * 117.00076 * 179.97438 * 13 12 10 15 15 O 1.21540 * 119.99577 * 359.97438 * 14 13 12 16 16 C 1.46948 * 119.99898 * 180.02562 * 14 13 12 17 17 C 1.33082 * 119.99971 * 173.56082 * 16 14 13 18 18 C 1.50705 * 119.99767 * 345.09738 * 17 16 14 19 19 H 1.08995 * 110.27633 * 351.62675 * 18 17 16 20 20 C 1.54947 * 110.31059 * 113.72082 * 18 17 16 21 21 C 1.55302 * 100.98278 * 155.43637 * 20 18 17 22 22 C 1.54440 * 102.22773 * 325.92208 * 21 20 18 23 23 O 1.43238 * 107.60828 * 21.29254 * 22 21 20 24 24 H 0.97004 * 119.99964 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00480 * 359.97438 * 9 7 2 26 26 H 1.08993 * 109.46910 * 59.99587 * 12 10 9 27 27 H 1.09007 * 109.46903 * 299.99822 * 12 10 9 28 28 H 1.07995 * 120.00180 * 353.54739 * 16 14 13 29 29 H 1.07997 * 120.00357 * 165.10000 * 17 16 14 30 30 H 1.08999 * 111.12043 * 273.38033 * 20 18 17 31 31 H 1.08995 * 111.12222 * 37.49627 * 20 18 17 32 32 H 1.09007 * 110.84937 * 84.07386 * 21 20 18 33 33 H 1.08994 * 110.84879 * 207.69772 * 21 20 18 34 34 H 1.09003 * 109.78419 * 261.79652 * 22 21 20 35 35 H 1.08998 * 109.93143 * 140.87529 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5578 -0.0002 12 6 1.2437 -4.8629 -0.0022 13 8 2.1872 -5.9666 -0.0015 14 6 1.6719 -7.2122 -0.0013 15 8 0.4670 -7.3714 -0.0013 16 6 2.5671 -8.3776 0.0000 17 6 2.0641 -9.6029 0.1294 18 6 0.6464 -9.7890 0.6057 19 1 0.2312 -8.8372 0.9370 20 6 -0.2257 -10.3921 -0.5240 21 6 -1.3502 -11.0738 0.3022 22 6 -0.5917 -11.5410 1.5638 23 8 0.5986 -10.7515 1.6710 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 -0.0016 26 1 0.6173 -4.9204 -0.8923 27 1 0.6166 -4.9208 0.8876 28 1 3.6331 -8.2398 -0.1043 29 1 2.6717 -10.4638 -0.1069 30 1 -0.6298 -9.6109 -1.1679 31 1 0.3348 -11.1251 -1.1042 32 1 -2.1297 -10.3574 0.5617 33 1 -1.7672 -11.9240 -0.2376 34 1 -0.3292 -12.5946 1.4676 35 1 -1.2135 -11.3941 2.4469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821409385.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:26 Heat of formation + Delta-G solvation = -161.776031 kcal Electronic energy + Delta-G solvation = -19792.535426 eV Core-core repulsion = 16369.838944 eV Total energy + Delta-G solvation = -3422.696482 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.75218 -40.44269 -39.92825 -37.66910 -36.04775 -34.83710 -33.42996 -32.99374 -30.50040 -29.40512 -26.74385 -25.00324 -22.96852 -22.53593 -21.45496 -20.93561 -20.08894 -18.90615 -17.97114 -17.77639 -17.54521 -17.27268 -16.68048 -16.28437 -15.84077 -15.77295 -15.36394 -14.88444 -14.51930 -14.21701 -13.95717 -13.86015 -13.57639 -13.47195 -12.94687 -12.75486 -12.63120 -12.48604 -12.25136 -12.12468 -12.02357 -11.84292 -11.58925 -11.36274 -10.55641 -10.48933 -10.28695 -10.13033 -8.53421 -6.04164 -0.07010 1.35314 1.38999 1.47305 1.58757 1.73089 1.86321 2.29889 2.98110 3.05965 3.12126 3.52937 3.62159 3.74080 4.00792 4.04953 4.15244 4.19254 4.21114 4.31049 4.40675 4.49689 4.81368 4.84824 4.91190 4.98458 5.05602 5.13324 5.21386 5.35921 5.55068 5.87973 6.01655 6.44670 6.63076 7.01805 7.38440 7.92210 8.63653 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.046114 B = 0.003064 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.042912 B = 9135.175478 C = 9511.730410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.084 0.916 9 N -0.557 5.557 10 C 0.435 3.565 11 O -0.619 6.619 12 C 0.073 3.927 13 O -0.343 6.343 14 C 0.483 3.517 15 O -0.522 6.522 16 C -0.191 4.191 17 C -0.031 4.031 18 C 0.061 3.939 19 H 0.096 0.904 20 C -0.137 4.137 21 C -0.150 4.150 22 C 0.043 3.957 23 O -0.401 6.401 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.169 0.831 29 H 0.176 0.824 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 -21.648 -0.841 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.102 0.898 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.506 6.506 12 C -0.005 4.005 13 O -0.258 6.258 14 C 0.331 3.669 15 O -0.415 6.415 16 C -0.210 4.210 17 C -0.049 4.049 18 C 0.005 3.995 19 H 0.113 0.887 20 C -0.175 4.175 21 C -0.188 4.188 22 C -0.033 4.033 23 O -0.322 6.322 24 H 0.091 0.909 25 H 0.235 0.765 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.187 0.813 29 H 0.193 0.807 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.899 -21.514 -0.678 21.719 hybrid contribution -0.496 1.103 -0.057 1.211 sum -3.394 -20.411 -0.734 20.704 Atomic orbital electron populations 1.69672 1.06955 1.29761 1.49128 1.26134 0.96594 1.02590 0.95596 0.84853 0.77891 0.76304 0.78842 1.19370 1.19358 1.19572 1.19726 0.92949 0.83410 1.50736 0.89813 1.41739 1.09554 1.04179 1.64005 1.20144 0.88087 0.85459 0.84114 1.90526 1.15533 1.87729 1.56795 1.22496 0.90152 0.82493 1.05330 1.86661 1.40470 1.15048 1.83613 1.22427 0.88062 0.83915 0.72449 1.90685 1.17274 1.86235 1.47355 1.22155 1.00759 0.88359 1.09728 1.24094 0.96055 0.97229 0.87512 1.22968 0.93951 0.94281 0.88312 0.88688 1.23148 0.96511 1.00498 0.97337 1.23139 0.98021 1.01818 0.95793 1.23340 0.85709 0.95791 0.98461 1.88391 1.43863 1.50322 1.49575 0.90927 0.76536 0.87391 0.87686 0.81311 0.80672 0.90186 0.88637 0.90906 0.87539 0.89513 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 2 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 3 Si 1.00 42.19 29.55 68.60 2.03 44.22 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.34 -19.21 9.68 84.04 0.81 -18.40 16 8 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.90 5.29 -306.98 -1.62 -30.53 16 10 C 0.44 21.63 7.86 87.66 0.69 22.32 16 11 O -0.62 -35.88 16.08 15.72 0.25 -35.63 16 12 C 0.07 2.78 5.96 71.24 0.42 3.20 16 13 O -0.34 -12.98 9.77 -50.73 -0.50 -13.48 16 14 C 0.48 15.01 7.73 70.10 0.54 15.55 16 15 O -0.52 -16.93 13.03 19.71 0.26 -16.67 16 16 C -0.19 -4.32 10.13 23.40 0.24 -4.09 16 17 C -0.03 -0.57 9.26 24.53 0.23 -0.35 16 18 C 0.06 1.35 2.97 30.52 0.09 1.44 16 19 H 0.10 2.71 4.88 -12.31 -0.06 2.65 16 20 C -0.14 -2.32 6.55 32.05 0.21 -2.11 16 21 C -0.15 -2.10 7.02 31.87 0.22 -1.88 16 22 C 0.04 0.68 7.80 72.47 0.56 1.25 16 23 O -0.40 -9.16 11.03 -148.98 -1.64 -10.81 16 24 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 25 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 26 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 27 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16 28 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.10 1.22 8.05 -2.39 -0.02 1.20 16 32 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -70.70 308.96 3.88 -66.82 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.34 Total: 27.58 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 4.49 Total: 16.96 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -1.34 Total: -78.99 kcal Atomic # 8 Polarization: -74.96 SS G_CDS: -1.63 Total: -76.59 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -70.70 3.88 -66.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821409385.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.957 kcal (2) G-P(sol) polarization free energy of solvation -70.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds