Wall clock time and date at job start Mon Mar 30 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99907 * 2 1 4 4 H 1.48502 * 109.47051 * 240.00093 * 3 2 1 5 5 H 1.48502 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47104 * 119.99884 * 3 2 1 7 7 C 1.37879 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99797 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99755 * 0.02562 * 7 2 1 10 10 O 1.42907 * 110.88623 * 62.42613 * 9 7 2 11 11 C 1.55155 * 111.03665 * 186.32756 * 9 7 2 12 12 C 1.54330 * 102.94292 * 153.58963 * 11 9 7 13 13 N 1.47026 * 107.26840 * 337.81024 * 12 11 9 14 14 C 1.34780 * 125.64391 * 178.97562 * 13 12 11 15 15 O 1.21608 * 119.99491 * 179.97438 * 14 13 12 16 16 C 1.47296 * 120.00167 * 359.97353 * 14 13 12 17 17 F 1.35102 * 119.99912 * 0.02562 * 16 14 13 18 18 C 1.33120 * 119.99845 * 180.02562 * 16 14 13 19 19 C 1.51403 * 136.31458 * 359.63277 * 18 16 14 20 20 C 1.53377 * 87.51196 * 206.05383 * 19 18 16 21 21 C 1.51401 * 136.31364 * 180.02562 * 18 16 14 22 22 C 1.47420 * 108.70428 * 358.94103 * 13 12 11 23 23 H 0.97002 * 119.99812 * 359.97438 * 1 2 3 24 24 H 0.96693 * 113.99773 * 297.57255 * 10 9 7 25 25 H 1.08998 * 110.71769 * 35.23084 * 11 9 7 26 26 H 1.08991 * 110.72382 * 271.95481 * 11 9 7 27 27 H 1.08998 * 109.88224 * 218.39343 * 12 11 9 28 28 H 1.08998 * 109.88221 * 97.22736 * 12 11 9 29 29 H 1.08994 * 113.56463 * 320.63407 * 19 18 16 30 30 H 1.09001 * 113.55815 * 91.37466 * 19 18 16 31 31 H 1.09005 * 113.96752 * 220.28854 * 20 19 18 32 32 H 1.09001 * 113.60004 * 88.80272 * 20 19 18 33 33 H 1.09003 * 113.55889 * 268.62887 * 21 18 16 34 34 H 1.09001 * 113.56353 * 39.28453 * 21 18 16 35 35 H 1.08997 * 110.36858 * 142.96748 * 22 13 12 36 36 H 1.08999 * 110.36307 * 265.28963 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4616 -2.6315 -1.1833 11 6 2.2190 -3.7011 0.1608 12 6 1.3257 -4.7804 0.8079 13 7 0.2054 -4.0864 1.4597 14 6 -0.8079 -4.6797 2.1214 15 8 -1.6845 -4.0030 2.6241 16 6 -0.8537 -6.1475 2.2355 17 9 0.1204 -6.8991 1.6774 18 6 -1.8548 -6.7334 2.8885 19 6 -3.0912 -6.2774 3.6339 20 6 -3.0037 -7.5792 4.4403 21 6 -2.2614 -8.1528 3.2234 22 6 0.3745 -2.6342 1.2705 23 1 -0.4850 0.8401 0.0004 24 1 -0.2243 -1.9563 -1.2761 25 1 3.0492 -3.4427 0.8182 26 1 2.5843 -4.0343 -0.8105 27 1 1.8972 -5.3392 1.5489 28 1 0.9473 -5.4567 0.0414 29 1 -2.9321 -5.3826 4.2356 30 1 -3.9797 -6.2130 3.0057 31 1 -3.9690 -8.0489 4.6291 32 1 -2.3858 -7.4979 5.3346 33 1 -2.9221 -8.6031 2.4825 34 1 -1.4218 -8.7959 3.4872 35 1 -0.5930 -2.1565 1.1163 36 1 0.8820 -2.1963 2.1301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844019794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:53 Heat of formation + Delta-G solvation = -85.827870 kcal Electronic energy + Delta-G solvation = -21072.443690 eV Core-core repulsion = 17665.413357 eV Total energy + Delta-G solvation = -3407.030333 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.70229 -39.49513 -38.55074 -37.08146 -34.24848 -32.24480 -30.55474 -29.76398 -27.85098 -25.87251 -25.44408 -23.48224 -22.13742 -20.10267 -19.58017 -18.28306 -17.27886 -16.89433 -16.24295 -15.91377 -15.27646 -15.19609 -15.01265 -14.51431 -14.38993 -13.45157 -13.15760 -13.04895 -12.83382 -12.54854 -12.36232 -12.05364 -11.84384 -11.62667 -11.41052 -11.20456 -11.03358 -10.82081 -10.62279 -10.53206 -10.48973 -10.21475 -9.46105 -9.37228 -8.85631 -8.70305 -8.38956 -7.82271 -6.28919 -4.38869 1.30645 3.21310 3.27519 3.28893 3.37278 3.48003 4.16667 4.24872 4.37063 4.54163 4.71535 4.98157 5.00140 5.32752 5.43517 5.49441 5.55691 5.67617 5.70900 5.78722 5.92019 6.06583 6.10170 6.13679 6.22277 6.49147 6.50882 6.72036 6.83434 6.95160 7.22285 7.32931 7.72605 8.00335 8.10334 8.53363 8.65158 9.28459 9.36896 10.78242 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035482 B = 0.004861 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.935870 B = 5759.220349 C = 6227.901374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.119 4.119 12 C 0.103 3.897 13 N -0.599 5.599 14 C 0.553 3.447 15 O -0.532 6.532 16 C 0.032 3.968 17 F -0.135 7.135 18 C -0.136 4.136 19 C -0.081 4.081 20 C -0.140 4.140 21 C -0.095 4.095 22 C 0.095 3.905 23 H 0.271 0.729 24 H 0.381 0.619 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 -12.860 5.593 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.390 6.390 11 C -0.157 4.157 12 C -0.020 4.020 13 N -0.330 5.330 14 C 0.340 3.660 15 O -0.412 6.412 16 C 0.010 3.990 17 F -0.113 7.113 18 C -0.139 4.139 19 C -0.118 4.118 20 C -0.177 4.177 21 C -0.132 4.132 22 C -0.026 4.026 23 H 0.081 0.919 24 H 0.231 0.769 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.046 -12.927 5.770 14.480 hybrid contribution 0.401 1.201 -0.042 1.267 sum -2.645 -11.725 5.728 13.315 Atomic orbital electron populations 1.69709 1.06008 1.28055 1.49405 1.25082 0.95041 0.99765 0.93286 0.86450 0.79523 0.82037 0.78829 1.19974 1.21068 1.20003 1.21426 0.93658 0.90008 1.52619 0.91495 1.19629 0.86615 0.91723 0.81249 1.86118 1.51548 1.57110 1.44258 1.22659 0.97573 0.95125 1.00312 1.22181 0.87886 0.95783 0.96171 1.48729 1.22656 1.10443 1.51191 1.17732 0.82243 0.85910 0.80122 1.90784 1.37901 1.63780 1.48727 1.18730 0.89777 0.88929 1.01554 1.91465 1.60882 1.75794 1.83202 1.23396 0.95892 0.99477 0.95126 1.21968 0.94221 0.98665 0.96949 1.22728 1.00986 0.97202 0.96812 1.22142 1.00342 0.92748 0.97969 1.23357 1.02994 0.76054 1.00203 0.91913 0.76932 0.90321 0.90573 0.92234 0.91665 0.89246 0.88248 0.90296 0.89682 0.88163 0.90508 0.89255 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.75 10.69 55.43 0.59 -23.15 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 3 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.00 8.27 -34.44 -0.28 -14.28 16 8 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 9 C 0.25 6.04 0.87 -89.63 -0.08 5.97 16 10 O -0.58 -14.90 13.16 -35.23 -0.46 -15.36 16 11 C -0.12 -2.41 6.13 -24.89 -0.15 -2.56 16 12 C 0.10 1.94 5.48 -3.06 -0.02 1.93 16 13 N -0.60 -12.89 3.33 -171.84 -0.57 -13.46 16 14 C 0.55 11.53 7.80 -12.58 -0.10 11.43 16 15 O -0.53 -12.24 15.42 5.27 0.08 -12.16 16 16 C 0.03 0.56 7.31 -37.68 -0.28 0.28 16 17 F -0.13 -2.21 14.38 2.25 0.03 -2.17 16 18 C -0.14 -1.95 6.88 -100.45 -0.69 -2.64 16 19 C -0.08 -1.02 6.99 -27.56 -0.19 -1.21 16 20 C -0.14 -1.31 8.17 -26.21 -0.21 -1.52 16 21 C -0.10 -0.98 7.95 -27.42 -0.22 -1.19 16 22 C 0.09 2.30 5.38 -2.53 -0.01 2.28 16 23 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.38 9.95 7.56 45.56 0.34 10.30 16 25 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.06 0.99 7.69 -51.93 -0.40 0.60 16 28 H 0.07 1.20 7.57 -51.93 -0.39 0.81 16 29 H 0.09 1.27 7.50 -51.93 -0.39 0.89 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 2.40 7.33 -51.93 -0.38 2.02 16 36 H 0.06 1.59 8.03 -51.93 -0.42 1.17 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -28.64 303.03 -7.25 -35.88 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -4.13 Total: 10.38 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.33 Total: 0.24 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.02 Total: -36.62 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.38 Total: -27.52 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.03 Total: -2.17 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.64 -7.25 -35.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844019794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.944 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds