Wall clock time and date at job start Mon Mar 30 2020 05:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99907 * 2 1 4 4 H 1.48502 * 109.47051 * 240.00093 * 3 2 1 5 5 H 1.48502 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47104 * 119.99884 * 3 2 1 7 7 C 1.37879 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99797 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99755 * 0.02562 * 7 2 1 10 10 O 1.42907 * 110.88623 * 62.42613 * 9 7 2 11 11 C 1.55155 * 111.03665 * 186.32756 * 9 7 2 12 12 C 1.54330 * 102.94292 * 153.58963 * 11 9 7 13 13 N 1.47026 * 107.26840 * 337.81024 * 12 11 9 14 14 C 1.34780 * 125.64391 * 178.97562 * 13 12 11 15 15 O 1.21608 * 119.99491 * 179.97438 * 14 13 12 16 16 C 1.47296 * 120.00167 * 359.97353 * 14 13 12 17 17 F 1.35102 * 119.99912 * 0.02562 * 16 14 13 18 18 C 1.33120 * 119.99845 * 180.02562 * 16 14 13 19 19 C 1.51403 * 136.31458 * 359.63277 * 18 16 14 20 20 C 1.53377 * 87.51196 * 206.05383 * 19 18 16 21 21 C 1.51401 * 136.31364 * 180.02562 * 18 16 14 22 22 C 1.47420 * 108.70428 * 358.94103 * 13 12 11 23 23 H 0.97002 * 119.99812 * 359.97438 * 1 2 3 24 24 H 0.96693 * 113.99773 * 297.57255 * 10 9 7 25 25 H 1.08998 * 110.71769 * 35.23084 * 11 9 7 26 26 H 1.08991 * 110.72382 * 271.95481 * 11 9 7 27 27 H 1.08998 * 109.88224 * 218.39343 * 12 11 9 28 28 H 1.08998 * 109.88221 * 97.22736 * 12 11 9 29 29 H 1.08994 * 113.56463 * 320.63407 * 19 18 16 30 30 H 1.09001 * 113.55815 * 91.37466 * 19 18 16 31 31 H 1.09005 * 113.96752 * 220.28854 * 20 19 18 32 32 H 1.09001 * 113.60004 * 88.80272 * 20 19 18 33 33 H 1.09003 * 113.55889 * 268.62887 * 21 18 16 34 34 H 1.09001 * 113.56353 * 39.28453 * 21 18 16 35 35 H 1.08997 * 110.36858 * 142.96748 * 22 13 12 36 36 H 1.08999 * 110.36307 * 265.28963 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4616 -2.6315 -1.1833 11 6 2.2190 -3.7011 0.1608 12 6 1.3257 -4.7804 0.8079 13 7 0.2054 -4.0864 1.4597 14 6 -0.8079 -4.6797 2.1214 15 8 -1.6845 -4.0030 2.6241 16 6 -0.8537 -6.1475 2.2355 17 9 0.1204 -6.8991 1.6774 18 6 -1.8548 -6.7334 2.8885 19 6 -3.0912 -6.2774 3.6339 20 6 -3.0037 -7.5792 4.4403 21 6 -2.2614 -8.1528 3.2234 22 6 0.3745 -2.6342 1.2705 23 1 -0.4850 0.8401 0.0004 24 1 -0.2243 -1.9563 -1.2761 25 1 3.0492 -3.4427 0.8182 26 1 2.5843 -4.0343 -0.8105 27 1 1.8972 -5.3392 1.5489 28 1 0.9473 -5.4567 0.0414 29 1 -2.9321 -5.3826 4.2356 30 1 -3.9797 -6.2130 3.0057 31 1 -3.9690 -8.0489 4.6291 32 1 -2.3858 -7.4979 5.3346 33 1 -2.9221 -8.6031 2.4825 34 1 -1.4218 -8.7959 3.4872 35 1 -0.5930 -2.1565 1.1163 36 1 0.8820 -2.1963 2.1301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844019794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:52 Heat of formation + Delta-G solvation = -104.854299 kcal Electronic energy + Delta-G solvation = -21073.268738 eV Core-core repulsion = 17665.413357 eV Total energy + Delta-G solvation = -3407.855381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.92492 -41.08762 -39.75223 -38.71872 -36.09938 -34.26072 -32.16184 -31.14384 -29.64689 -27.34009 -26.72524 -24.95372 -23.45680 -21.64749 -21.26554 -19.49365 -19.17269 -18.52576 -17.49397 -17.21943 -17.05551 -16.62041 -16.35665 -16.23422 -15.86710 -15.00703 -14.81189 -14.74515 -14.61731 -13.76823 -13.52927 -13.40658 -13.30500 -13.16066 -12.86326 -12.82545 -12.56212 -12.38015 -12.28754 -12.14277 -12.06922 -11.51761 -11.23320 -10.98754 -10.67031 -10.35965 -10.10134 -9.52405 -8.26455 -6.44213 0.02774 1.43675 1.43930 1.52468 1.82782 1.93894 2.37776 2.95432 2.99528 3.14749 3.58763 3.72614 3.74214 4.03739 4.12173 4.17825 4.26623 4.30619 4.57103 4.68528 4.69367 4.72725 4.86316 4.97823 5.01953 5.02581 5.11632 5.18180 5.28157 5.34018 5.40076 5.47987 5.72459 6.03846 6.46654 6.64123 6.90183 7.24164 7.32608 8.79014 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035482 B = 0.004861 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.935870 B = 5759.220349 C = 6227.901374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.070 0.930 9 C 0.233 3.767 10 O -0.587 6.587 11 C -0.113 4.113 12 C 0.108 3.892 13 N -0.609 5.609 14 C 0.545 3.455 15 O -0.568 6.568 16 C -0.005 4.005 17 F -0.132 7.132 18 C -0.117 4.117 19 C -0.096 4.096 20 C -0.121 4.121 21 C -0.086 4.086 22 C 0.109 3.891 23 H 0.270 0.730 24 H 0.373 0.627 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 -15.004 6.276 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.597 4.597 8 H 0.088 0.912 9 C 0.192 3.808 10 O -0.395 6.395 11 C -0.151 4.151 12 C -0.014 4.014 13 N -0.340 5.340 14 C 0.335 3.665 15 O -0.450 6.450 16 C -0.027 4.027 17 F -0.111 7.111 18 C -0.120 4.120 19 C -0.133 4.133 20 C -0.158 4.158 21 C -0.123 4.123 22 C -0.013 4.013 23 H 0.079 0.921 24 H 0.222 0.778 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.144 0.856 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.812 -15.109 6.450 16.667 hybrid contribution 0.228 1.829 -0.197 1.853 sum -2.584 -13.280 6.253 14.905 Atomic orbital electron populations 1.69833 1.07224 1.28575 1.49854 1.25838 0.95754 1.02870 0.92883 0.85483 0.78286 0.78148 0.78976 1.19457 1.21041 1.19405 1.21757 0.94025 0.91088 1.52833 0.91163 1.19863 0.87133 0.93202 0.80567 1.86108 1.51493 1.56816 1.45094 1.22672 0.97270 0.93683 1.01428 1.22267 0.87062 0.95233 0.96832 1.48792 1.23896 1.09374 1.51932 1.18410 0.81308 0.87755 0.79015 1.90747 1.39000 1.65155 1.50085 1.18173 0.92148 0.86810 1.05545 1.91457 1.60932 1.75075 1.83597 1.24180 0.94278 1.02823 0.90745 1.22228 0.93906 0.99714 0.97483 1.22714 1.02601 0.94346 0.96175 1.22353 1.01168 0.90172 0.98575 1.22901 1.00751 0.77918 0.99738 0.92061 0.77791 0.88978 0.89470 0.89532 0.91044 0.91631 0.87016 0.87158 0.89254 0.85619 0.88976 0.92908 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.23 10.69 21.45 0.23 -50.00 16 2 C 0.03 1.45 5.29 84.65 0.45 1.90 16 3 Si 0.97 41.80 29.54 68.60 2.03 43.83 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.56 -29.37 8.27 25.60 0.21 -29.16 16 8 H 0.07 3.55 7.79 -2.91 -0.02 3.53 16 9 C 0.23 11.53 0.87 -10.15 -0.01 11.52 16 10 O -0.59 -30.85 13.16 -148.98 -1.96 -32.81 16 11 C -0.11 -4.49 6.13 31.78 0.19 -4.30 16 12 C 0.11 4.00 5.48 86.73 0.47 4.47 16 13 N -0.61 -26.76 3.33 -815.82 -2.71 -29.48 16 14 C 0.55 23.30 7.80 86.62 0.68 23.98 16 15 O -0.57 -27.26 15.42 -4.06 -0.06 -27.33 16 16 C 0.00 -0.16 7.31 23.50 0.17 0.01 16 17 F -0.13 -4.12 14.38 44.97 0.65 -3.47 16 18 C -0.12 -3.15 6.88 -17.16 -0.12 -3.27 16 19 C -0.10 -2.26 6.99 30.06 0.21 -2.05 16 20 C -0.12 -1.79 8.17 30.93 0.25 -1.54 16 21 C -0.09 -1.41 7.95 30.15 0.24 -1.17 16 22 C 0.11 5.52 5.38 86.86 0.47 5.99 16 23 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 24 H 0.37 20.39 7.56 -74.06 -0.56 19.83 16 25 H 0.09 3.38 8.03 -2.39 -0.02 3.36 16 26 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 27 H 0.09 2.74 7.69 -2.39 -0.02 2.72 16 28 H 0.07 2.55 7.57 -2.39 -0.02 2.53 16 29 H 0.07 1.88 7.50 -2.39 -0.02 1.86 16 30 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 3.01 7.33 -2.39 -0.02 3.00 16 36 H 0.05 2.51 8.03 -2.39 -0.02 2.49 16 Total: -1.00 -64.09 303.03 1.93 -62.17 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.54 Total: 30.71 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 3.22 Total: 6.39 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -2.48 Total: -79.48 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -2.02 Total: -60.14 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.65 Total: -3.47 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -64.09 1.93 -62.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844019794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.686 kcal (2) G-P(sol) polarization free energy of solvation -64.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds