Wall clock time and date at job start Mon Mar 30 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47208 * 270.00047 * 3 2 1 5 5 H 1.48497 * 109.46957 * 30.00591 * 3 2 1 6 6 H 1.48502 * 109.47024 * 150.00418 * 3 2 1 7 7 C 1.37878 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00271 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88712 * 303.88844 * 9 7 2 11 11 C 1.55153 * 111.00654 * 180.02562 * 9 7 2 12 12 C 1.54323 * 103.10236 * 206.30001 * 11 9 7 13 13 N 1.47486 * 107.03754 * 22.24109 * 12 11 9 14 14 C 1.34778 * 125.59413 * 181.00840 * 13 12 11 15 15 O 1.21605 * 119.99704 * 180.02562 * 14 13 12 16 16 C 1.47293 * 120.00098 * 0.02562 * 14 13 12 17 17 F 1.35108 * 119.99911 * 0.02562 * 16 14 13 18 18 C 1.33111 * 120.00106 * 180.02562 * 16 14 13 19 19 C 1.51400 * 136.31485 * 359.62720 * 18 16 14 20 20 C 1.53385 * 87.52045 * 206.05785 * 19 18 16 21 21 C 1.51401 * 136.31596 * 180.02562 * 18 16 14 22 22 C 1.47428 * 108.75727 * 1.02624 * 13 12 11 23 23 H 0.97007 * 119.99658 * 359.97438 * 1 2 3 24 24 H 0.96703 * 113.99966 * 56.11386 * 10 9 7 25 25 H 1.09002 * 110.72030 * 324.75268 * 11 9 7 26 26 H 1.09003 * 110.72184 * 87.84919 * 11 9 7 27 27 H 1.09000 * 109.88693 * 141.69901 * 12 11 9 28 28 H 1.09005 * 109.88012 * 262.86516 * 12 11 9 29 29 H 1.09000 * 113.56247 * 320.64206 * 19 18 16 30 30 H 1.09001 * 113.56221 * 91.37889 * 19 18 16 31 31 H 1.08998 * 113.97229 * 220.29456 * 20 19 18 32 32 H 1.09003 * 113.59397 * 88.79759 * 20 19 18 33 33 H 1.09000 * 113.56206 * 268.62304 * 21 18 16 34 34 H 1.09002 * 113.56663 * 39.28830 * 21 18 16 35 35 H 1.09000 * 110.36462 * 217.05803 * 22 13 12 36 36 H 1.08998 * 110.36847 * 94.73011 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3520 -2.5684 1.1081 11 6 2.2272 -3.7050 -0.0005 12 6 1.4001 -4.8248 -0.6665 13 7 0.3462 -4.1684 -1.4626 14 6 -0.6004 -4.8007 -2.1840 15 8 -1.4232 -4.1559 -2.8054 16 6 -0.6385 -6.2727 -2.2199 17 9 0.2753 -6.9891 -1.5291 18 6 -1.5731 -6.8972 -2.9328 19 6 -2.7387 -6.4874 -3.8078 20 6 -3.3830 -7.8370 -3.4668 21 6 -1.9494 -8.3344 -3.2249 22 6 0.4995 -2.7074 -1.3391 23 1 -0.4850 0.8401 0.0004 24 1 -0.2775 -1.8355 1.1504 25 1 3.1170 -3.4809 -0.5889 26 1 2.4997 -3.9807 1.0183 27 1 2.0401 -5.4228 -1.3152 28 1 0.9493 -5.4574 0.0982 29 1 -3.2933 -5.6319 -3.4224 30 1 -2.4775 -6.3832 -4.8609 31 1 -3.8792 -8.3167 -4.3105 32 1 -3.9979 -7.8120 -2.5671 33 1 -1.4715 -8.7370 -4.1179 34 1 -1.8556 -8.9934 -2.3618 35 1 -0.4773 -2.2250 -1.3048 36 1 1.0878 -2.3162 -2.1692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844019797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:56 Heat of formation + Delta-G solvation = -86.084622 kcal Electronic energy + Delta-G solvation = -21060.659100 eV Core-core repulsion = 17653.617633 eV Total energy + Delta-G solvation = -3407.041467 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.69972 -39.48142 -38.53598 -37.07193 -34.26133 -32.16998 -30.56190 -29.76251 -27.89899 -25.87144 -25.44607 -23.47628 -22.12993 -20.10235 -19.55765 -18.28624 -17.32162 -16.91836 -16.19999 -15.96072 -15.26935 -15.14564 -15.03593 -14.51452 -14.35782 -13.45532 -13.16031 -13.04448 -12.83111 -12.55482 -12.36546 -12.06395 -11.80312 -11.58728 -11.48577 -11.19258 -11.06721 -10.80024 -10.59708 -10.52731 -10.49840 -10.20015 -9.49074 -9.39008 -8.86050 -8.70382 -8.40758 -7.81588 -6.31511 -4.41143 1.30712 3.18916 3.26876 3.29333 3.37376 3.47094 4.16610 4.23468 4.36213 4.54405 4.71260 4.95926 5.00556 5.32892 5.44315 5.48812 5.55702 5.68377 5.70725 5.81914 5.92050 6.06585 6.10657 6.14689 6.22487 6.48573 6.50699 6.71751 6.81486 6.94043 7.22032 7.31141 7.71972 7.96675 8.09078 8.52889 8.62986 9.28869 9.44394 10.75914 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.004824 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.463224 B = 5802.487901 C = 6249.425992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.120 4.120 12 C 0.103 3.897 13 N -0.599 5.599 14 C 0.553 3.447 15 O -0.533 6.533 16 C 0.032 3.968 17 F -0.135 7.135 18 C -0.135 4.135 19 C -0.081 4.081 20 C -0.140 4.140 21 C -0.095 4.095 22 C 0.093 3.907 23 H 0.272 0.728 24 H 0.386 0.614 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -13.054 -5.215 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.158 4.158 12 C -0.019 4.019 13 N -0.330 5.330 14 C 0.340 3.660 15 O -0.413 6.413 16 C 0.010 3.990 17 F -0.113 7.113 18 C -0.139 4.139 19 C -0.118 4.118 20 C -0.177 4.177 21 C -0.132 4.132 22 C -0.028 4.028 23 H 0.082 0.918 24 H 0.238 0.762 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.504 -13.167 -5.412 14.454 hybrid contribution 0.403 1.233 0.052 1.298 sum -2.101 -11.933 -5.360 13.250 Atomic orbital electron populations 1.69569 1.06068 1.28052 1.49804 1.25089 0.95042 0.99843 0.93249 0.86367 0.79787 0.82251 0.78311 1.20373 1.20948 1.19638 1.21508 0.93763 0.90031 1.52326 0.91365 1.19594 0.85764 0.91787 0.81990 1.86074 1.51071 1.52969 1.49280 1.22669 0.97904 0.94791 1.00412 1.22263 0.89334 0.96134 0.94209 1.48809 1.28512 1.10033 1.45599 1.17740 0.81835 0.85766 0.80675 1.90781 1.39376 1.65962 1.45170 1.18723 0.90853 0.89283 1.00114 1.91467 1.64556 1.77739 1.77580 1.23390 0.94468 0.99144 0.96869 1.21970 0.92684 0.98378 0.98803 1.22731 0.95555 0.97099 1.02344 1.22144 0.96195 0.92523 1.02351 1.23377 1.02775 0.75867 1.00782 0.91828 0.76174 0.90412 0.90549 0.92142 0.91618 0.89192 0.88317 0.90300 0.89615 0.88206 0.90476 0.89720 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.80 10.72 55.43 0.59 -23.20 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 3 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -13.95 8.25 -34.44 -0.28 -14.24 16 8 H 0.07 1.72 7.76 -52.48 -0.41 1.32 16 9 C 0.25 6.09 0.89 -89.62 -0.08 6.01 16 10 O -0.58 -15.17 13.18 -35.23 -0.46 -15.63 16 11 C -0.12 -2.43 6.11 -24.90 -0.15 -2.59 16 12 C 0.10 1.96 5.50 -2.81 -0.02 1.94 16 13 N -0.60 -12.90 3.34 -171.46 -0.57 -13.47 16 14 C 0.55 11.54 7.80 -12.58 -0.10 11.44 16 15 O -0.53 -12.26 15.42 5.27 0.08 -12.18 16 16 C 0.03 0.56 7.31 -37.69 -0.28 0.28 16 17 F -0.13 -2.21 14.38 2.25 0.03 -2.18 16 18 C -0.14 -1.95 6.88 -100.45 -0.69 -2.64 16 19 C -0.08 -1.02 6.99 -27.56 -0.19 -1.22 16 20 C -0.14 -1.33 8.17 -26.20 -0.21 -1.54 16 21 C -0.10 -0.98 7.95 -27.41 -0.22 -1.20 16 22 C 0.09 2.25 5.63 -2.52 -0.01 2.24 16 23 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 24 H 0.39 10.34 6.93 45.56 0.32 10.65 16 25 H 0.08 1.47 8.01 -51.93 -0.42 1.05 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.06 1.01 7.69 -51.93 -0.40 0.61 16 28 H 0.07 1.21 7.58 -51.93 -0.39 0.82 16 29 H 0.09 1.30 7.50 -51.93 -0.39 0.92 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 2.28 7.64 -51.93 -0.40 1.88 16 36 H 0.06 1.56 8.03 -51.93 -0.42 1.15 16 LS Contribution 303.00 15.07 4.57 4.57 Total: -1.00 -28.67 303.00 -7.29 -35.96 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.18 Total: 10.71 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.33 Total: 0.24 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.02 Total: -36.67 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.38 Total: -27.81 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.03 Total: -2.18 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.67 -7.29 -35.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844019797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.121 kcal (2) G-P(sol) polarization free energy of solvation -28.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds