Wall clock time and date at job start Mon Mar 30 2020 05:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47208 * 270.00047 * 3 2 1 5 5 H 1.48497 * 109.46957 * 30.00591 * 3 2 1 6 6 H 1.48502 * 109.47024 * 150.00418 * 3 2 1 7 7 C 1.37878 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00271 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88712 * 303.88844 * 9 7 2 11 11 C 1.55153 * 111.00654 * 180.02562 * 9 7 2 12 12 C 1.54323 * 103.10236 * 206.30001 * 11 9 7 13 13 N 1.47486 * 107.03754 * 22.24109 * 12 11 9 14 14 C 1.34778 * 125.59413 * 181.00840 * 13 12 11 15 15 O 1.21605 * 119.99704 * 180.02562 * 14 13 12 16 16 C 1.47293 * 120.00098 * 0.02562 * 14 13 12 17 17 F 1.35108 * 119.99911 * 0.02562 * 16 14 13 18 18 C 1.33111 * 120.00106 * 180.02562 * 16 14 13 19 19 C 1.51400 * 136.31485 * 359.62720 * 18 16 14 20 20 C 1.53385 * 87.52045 * 206.05785 * 19 18 16 21 21 C 1.51401 * 136.31596 * 180.02562 * 18 16 14 22 22 C 1.47428 * 108.75727 * 1.02624 * 13 12 11 23 23 H 0.97007 * 119.99658 * 359.97438 * 1 2 3 24 24 H 0.96703 * 113.99966 * 56.11386 * 10 9 7 25 25 H 1.09002 * 110.72030 * 324.75268 * 11 9 7 26 26 H 1.09003 * 110.72184 * 87.84919 * 11 9 7 27 27 H 1.09000 * 109.88693 * 141.69901 * 12 11 9 28 28 H 1.09005 * 109.88012 * 262.86516 * 12 11 9 29 29 H 1.09000 * 113.56247 * 320.64206 * 19 18 16 30 30 H 1.09001 * 113.56221 * 91.37889 * 19 18 16 31 31 H 1.08998 * 113.97229 * 220.29456 * 20 19 18 32 32 H 1.09003 * 113.59397 * 88.79759 * 20 19 18 33 33 H 1.09000 * 113.56206 * 268.62304 * 21 18 16 34 34 H 1.09002 * 113.56663 * 39.28830 * 21 18 16 35 35 H 1.09000 * 110.36462 * 217.05803 * 22 13 12 36 36 H 1.08998 * 110.36847 * 94.73011 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3520 -2.5684 1.1081 11 6 2.2272 -3.7050 -0.0005 12 6 1.4001 -4.8248 -0.6665 13 7 0.3462 -4.1684 -1.4626 14 6 -0.6004 -4.8007 -2.1840 15 8 -1.4232 -4.1559 -2.8054 16 6 -0.6385 -6.2727 -2.2199 17 9 0.2753 -6.9891 -1.5291 18 6 -1.5731 -6.8972 -2.9328 19 6 -2.7387 -6.4874 -3.8078 20 6 -3.3830 -7.8370 -3.4668 21 6 -1.9494 -8.3344 -3.2249 22 6 0.4995 -2.7074 -1.3391 23 1 -0.4850 0.8401 0.0004 24 1 -0.2775 -1.8355 1.1504 25 1 3.1170 -3.4809 -0.5889 26 1 2.4997 -3.9807 1.0183 27 1 2.0401 -5.4228 -1.3152 28 1 0.9493 -5.4574 0.0982 29 1 -3.2933 -5.6319 -3.4224 30 1 -2.4775 -6.3832 -4.8609 31 1 -3.8792 -8.3167 -4.3105 32 1 -3.9979 -7.8120 -2.5671 33 1 -1.4715 -8.7370 -4.1179 34 1 -1.8556 -8.9934 -2.3618 35 1 -0.4773 -2.2250 -1.3048 36 1 1.0878 -2.3162 -2.1692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844019797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:55 Heat of formation + Delta-G solvation = -105.089932 kcal Electronic energy + Delta-G solvation = -21061.483232 eV Core-core repulsion = 17653.617633 eV Total energy + Delta-G solvation = -3407.865599 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.92267 -41.07043 -39.74351 -38.71785 -36.12032 -34.18819 -32.17380 -31.14505 -29.69304 -27.34154 -26.72552 -24.94674 -23.45642 -21.63414 -21.26023 -19.49810 -19.23676 -18.53349 -17.41278 -17.30231 -17.05467 -16.61675 -16.33542 -16.21574 -15.85787 -15.03098 -14.78343 -14.76610 -14.60884 -13.78287 -13.52243 -13.38895 -13.31956 -13.16189 -12.88681 -12.84921 -12.56364 -12.34595 -12.25280 -12.15166 -12.07197 -11.52195 -11.28356 -10.98216 -10.67500 -10.38807 -10.09455 -9.52362 -8.28517 -6.45974 0.02834 1.42092 1.44005 1.54313 1.82714 1.92996 2.37119 2.94333 2.97909 3.14350 3.58320 3.72924 3.74626 4.06127 4.12327 4.17496 4.25933 4.30682 4.56934 4.67315 4.69167 4.72749 4.85820 4.94634 5.01554 5.02208 5.11446 5.17658 5.29085 5.33798 5.39406 5.46631 5.72841 5.99997 6.45483 6.62692 6.89750 7.26738 7.35550 8.77694 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.004824 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.463224 B = 5802.487901 C = 6249.425992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.026 3.974 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.233 3.767 10 O -0.591 6.591 11 C -0.114 4.114 12 C 0.109 3.891 13 N -0.609 5.609 14 C 0.545 3.455 15 O -0.568 6.568 16 C -0.005 4.005 17 F -0.132 7.132 18 C -0.117 4.117 19 C -0.096 4.096 20 C -0.123 4.123 21 C -0.085 4.085 22 C 0.106 3.894 23 H 0.272 0.728 24 H 0.378 0.622 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 -15.220 -6.005 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.175 4.175 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.091 0.909 9 C 0.192 3.808 10 O -0.401 6.401 11 C -0.152 4.152 12 C -0.013 4.013 13 N -0.339 5.339 14 C 0.335 3.665 15 O -0.451 6.451 16 C -0.027 4.027 17 F -0.111 7.111 18 C -0.120 4.120 19 C -0.133 4.133 20 C -0.160 4.160 21 C -0.122 4.122 22 C -0.016 4.016 23 H 0.081 0.919 24 H 0.229 0.771 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.016 -15.371 -6.192 16.693 hybrid contribution 0.150 1.861 0.231 1.881 sum -1.866 -13.510 -5.961 14.884 Atomic orbital electron populations 1.69684 1.07325 1.28666 1.50263 1.25863 0.95758 1.03004 0.92842 0.85386 0.78696 0.78285 0.78261 1.20104 1.20854 1.18871 1.21832 0.94149 0.91042 1.52535 0.90947 1.19853 0.86192 0.93341 0.81374 1.86064 1.51227 1.52590 1.50170 1.22681 0.97596 0.93296 1.01577 1.22353 0.88826 0.95634 0.94498 1.48876 1.29692 1.08940 1.46438 1.18421 0.80848 0.87626 0.79626 1.90743 1.40496 1.67302 1.46531 1.18167 0.93561 0.87144 1.03824 1.91459 1.64662 1.77043 1.77900 1.24177 0.92009 1.02450 0.93369 1.22233 0.92272 0.99462 0.99289 1.22719 0.95350 0.94356 1.03606 1.22356 0.96137 0.89696 1.03984 1.22947 1.00327 0.77792 1.00557 0.91876 0.77133 0.88890 0.89550 0.89280 0.91148 0.91885 0.86639 0.87006 0.89588 0.85292 0.89174 0.93553 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.42 10.72 21.45 0.23 -50.19 16 2 C 0.03 1.35 5.30 84.66 0.45 1.80 16 3 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 4 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.56 -29.24 8.25 25.60 0.21 -29.02 16 8 H 0.07 3.64 7.76 -2.91 -0.02 3.62 16 9 C 0.23 11.60 0.89 -10.15 -0.01 11.59 16 10 O -0.59 -31.62 13.18 -148.98 -1.96 -33.58 16 11 C -0.11 -4.54 6.11 31.78 0.19 -4.34 16 12 C 0.11 4.02 5.50 86.64 0.48 4.50 16 13 N -0.61 -26.79 3.34 -814.62 -2.72 -29.51 16 14 C 0.55 23.33 7.80 86.62 0.68 24.00 16 15 O -0.57 -27.32 15.42 -4.05 -0.06 -27.38 16 16 C 0.00 -0.17 7.31 23.50 0.17 0.01 16 17 F -0.13 -4.13 14.38 44.97 0.65 -3.48 16 18 C -0.12 -3.14 6.88 -17.16 -0.12 -3.26 16 19 C -0.10 -2.24 6.99 30.06 0.21 -2.03 16 20 C -0.12 -1.87 8.17 30.94 0.25 -1.62 16 21 C -0.09 -1.39 7.95 30.15 0.24 -1.15 16 22 C 0.11 5.37 5.63 86.86 0.49 5.86 16 23 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 24 H 0.38 21.16 6.93 -74.06 -0.51 20.65 16 25 H 0.09 3.39 8.01 -2.39 -0.02 3.37 16 26 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 27 H 0.09 2.79 7.69 -2.39 -0.02 2.77 16 28 H 0.07 2.53 7.58 -2.38 -0.02 2.52 16 29 H 0.06 1.84 7.50 -2.39 -0.02 1.83 16 30 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 35 H 0.05 2.65 7.64 -2.39 -0.02 2.63 16 36 H 0.05 2.68 8.03 -2.39 -0.02 2.67 16 Total: -1.00 -64.43 303.00 1.99 -62.45 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.59 Total: 31.67 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 3.24 Total: 6.33 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -2.49 Total: -79.70 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -2.03 Total: -60.96 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.65 Total: -3.48 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -64.43 1.99 -62.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844019797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.643 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds