Wall clock time and date at job start Mon Mar 30 2020 04:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46862 * 146.54161 * 3 2 1 5 5 C 1.37089 * 119.99542 * 264.49599 * 4 3 2 6 6 H 1.07999 * 120.00230 * 199.05742 * 5 4 3 7 7 C 1.38956 * 120.00380 * 19.05846 * 5 4 3 8 8 N 1.31407 * 119.99709 * 22.20476 * 7 5 4 9 9 Si 1.86800 * 120.00095 * 202.20283 * 7 5 4 10 10 H 1.48493 * 109.47059 * 60.00100 * 9 7 5 11 11 H 1.48504 * 109.46991 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47219 * 300.00054 * 9 7 5 13 13 C 1.34778 * 120.00131 * 84.49898 * 4 3 2 14 14 O 1.21289 * 119.99692 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99711 * 0.27466 * 13 4 3 16 16 C 1.53886 * 113.58682 * 278.93840 * 15 13 4 17 17 C 1.53515 * 86.79791 * 270.35487 * 16 15 13 18 18 C 1.52457 * 128.58442 * 114.93872 * 17 16 15 19 19 C 1.52455 * 128.58879 * 194.89200 * 17 16 15 20 20 F 1.39898 * 117.51548 * 349.84649 * 19 17 16 21 21 F 1.39902 * 117.50993 * 134.91035 * 19 17 16 22 22 C 1.53252 * 87.68520 * 334.91792 * 17 16 15 23 23 H 4.40641 * 5.51330 * 180.02562 * 4 1 2 24 24 H 1.08995 * 109.47421 * 26.53813 * 3 2 1 25 25 H 1.08999 * 109.47175 * 266.53632 * 3 2 1 26 26 H 0.97006 * 120.00318 * 179.97438 * 8 7 5 27 27 H 1.08995 * 112.83261 * 50.05868 * 15 13 4 28 28 H 1.09000 * 113.64688 * 24.89626 * 16 15 13 29 29 H 1.09006 * 113.64794 * 155.89606 * 16 15 13 30 30 H 1.09000 * 117.51013 * 225.05447 * 18 17 16 31 31 H 1.08996 * 117.51330 * 10.16563 * 18 17 16 32 32 H 1.08998 * 113.65039 * 270.57881 * 22 17 16 33 33 H 1.08998 * 113.64541 * 139.57790 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1533 -0.7616 5 6 3.4697 1.0093 -2.0829 6 1 4.1034 1.7410 -2.5618 7 6 2.9947 -0.0780 -2.8060 8 7 1.9167 -0.7135 -2.4049 9 14 3.8886 -0.6364 -4.3483 10 1 5.2818 -1.0164 -4.0027 11 1 3.1856 -1.8074 -4.9313 12 1 3.9084 0.4712 -5.3373 13 6 3.2524 2.3551 -0.1631 14 8 3.6558 3.3094 -0.7938 15 6 2.8891 2.5118 1.2910 16 6 1.3781 2.6722 1.5343 17 6 1.6013 4.1834 1.3827 18 6 1.0699 5.1194 0.3029 19 6 0.6674 5.3258 1.7659 20 9 -0.6428 4.9955 2.1284 21 9 1.2241 6.4165 2.4424 22 6 3.0529 3.9495 1.8151 23 1 -1.0501 -0.0002 0.0004 24 1 3.0098 -0.9185 -0.4591 25 1 3.0093 0.0629 1.0258 26 1 1.5848 -1.4723 -2.9099 27 1 3.3560 1.7598 1.9270 28 1 0.7602 2.2391 0.7477 29 1 1.0623 2.3751 2.5345 30 1 1.7686 5.8338 -0.1326 31 1 0.3138 4.7263 -0.3766 32 1 3.2027 4.0074 2.8931 33 1 3.7769 4.5397 1.2534 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847177857.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:13 Heat of formation + Delta-G solvation = -20.412781 kcal Electronic energy + Delta-G solvation = -20926.489987 eV Core-core repulsion = 17398.835960 eV Total energy + Delta-G solvation = -3527.654027 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.65854 -48.34478 -41.39648 -38.97452 -36.92064 -34.38887 -33.64145 -32.96610 -28.35358 -27.18691 -26.66189 -24.83287 -23.49211 -21.22464 -19.69146 -19.43182 -18.69705 -18.30718 -18.18102 -17.30900 -16.96821 -16.67505 -16.06462 -15.70850 -15.16481 -15.04875 -14.76736 -14.71107 -14.50198 -14.18010 -14.00718 -13.70638 -13.42214 -13.21612 -12.85203 -12.74031 -12.59840 -12.42451 -12.14884 -11.56597 -11.41712 -11.11089 -10.85874 -10.65542 -10.44030 -10.20700 -9.76091 -8.28171 -5.88534 1.39147 1.44463 1.52944 1.94172 2.01835 2.13866 2.19009 2.37403 2.46509 2.98354 3.07420 3.13893 3.28150 3.60756 3.62670 3.75888 3.95540 4.14049 4.35736 4.46760 4.55537 4.70148 4.79027 4.79455 4.90118 4.99360 5.03420 5.10179 5.22998 5.49841 5.51200 6.11962 6.49898 7.20189 7.23275 7.49055 8.06704 8.69283 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.005929 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.795183 B = 4721.123348 C = 5085.288812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.140 4.140 3 C 0.233 3.767 4 N -0.450 5.450 5 C -0.352 4.352 6 H 0.073 0.927 7 C 0.006 3.994 8 N -0.868 5.868 9 Si 0.977 3.023 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.282 1.282 13 C 0.460 3.540 14 O -0.619 6.619 15 C -0.120 4.120 16 C -0.075 4.075 17 C -0.156 4.156 18 C -0.144 4.144 19 C 0.204 3.796 20 F -0.167 7.167 21 F -0.165 7.165 22 C -0.067 4.067 23 H 0.226 0.774 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.270 0.730 27 H 0.125 0.875 28 H 0.068 0.932 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 2.476 9.883 10.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.141 4.141 3 C 0.111 3.889 4 N -0.167 5.167 5 C -0.480 4.480 6 H 0.091 0.909 7 C -0.198 4.198 8 N -0.505 5.505 9 Si 0.801 3.199 10 H -0.192 1.192 11 H -0.200 1.200 12 H -0.208 1.208 13 C 0.250 3.750 14 O -0.505 6.505 15 C -0.142 4.142 16 C -0.113 4.113 17 C -0.157 4.157 18 C -0.181 4.181 19 C 0.168 3.832 20 F -0.147 7.147 21 F -0.146 7.146 22 C -0.105 4.105 23 H 0.243 0.757 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.087 0.913 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.120 2.766 9.527 10.144 hybrid contribution -0.153 -0.130 -1.196 1.213 sum -2.273 2.635 8.330 9.028 Atomic orbital electron populations 1.24975 0.96186 1.01230 1.04339 1.23235 0.94686 0.99231 0.96973 1.18292 0.84796 0.90546 0.95298 1.43817 1.56151 1.07093 1.09669 1.19462 1.30231 1.10743 0.87516 0.90881 1.25876 0.95253 0.97218 1.01427 1.70163 1.18034 1.21098 1.41169 0.85253 0.78898 0.77574 0.78128 1.19227 1.20040 1.20773 1.20376 0.82667 0.82092 0.89830 1.90470 1.52496 1.39742 1.67839 1.22145 0.98529 1.00207 0.93270 1.22657 0.94832 0.89648 1.04152 1.23908 0.97919 0.93609 1.00308 1.24101 1.02742 1.00986 0.90316 1.20072 0.78754 0.88708 0.95659 1.92982 1.36479 1.92225 1.93053 1.92981 1.84307 1.55360 1.81933 1.22423 0.91522 0.94185 1.02343 0.75719 0.89601 0.88092 0.91955 0.85683 0.91301 0.85549 0.85913 0.86576 0.85286 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.23 18.22 74.32 1.35 -7.88 16 2 C -0.14 -5.67 9.32 31.12 0.29 -5.38 16 3 C 0.23 9.53 4.92 84.57 0.42 9.95 16 4 N -0.45 -21.66 2.60 -645.42 -1.68 -23.34 16 5 C -0.35 -19.12 9.29 84.04 0.78 -18.34 16 6 H 0.07 4.30 7.42 -2.91 -0.02 4.28 16 7 C 0.01 0.32 4.83 84.93 0.41 0.73 16 8 N -0.87 -43.90 9.56 21.66 0.21 -43.69 16 9 Si 0.98 41.16 29.61 68.60 2.03 43.19 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.46 20.94 6.82 87.66 0.60 21.53 16 14 O -0.62 -32.81 15.49 -3.06 -0.05 -32.85 16 15 C -0.12 -3.91 3.16 -10.94 -0.03 -3.94 16 16 C -0.08 -2.26 6.93 31.07 0.22 -2.05 16 17 C -0.16 -4.81 2.74 -52.29 -0.14 -4.95 16 18 C -0.14 -4.55 10.50 30.46 0.32 -4.23 16 19 C 0.20 6.04 5.26 30.46 0.16 6.20 16 20 F -0.17 -5.03 17.60 44.97 0.79 -4.24 16 21 F -0.17 -4.87 17.60 44.97 0.79 -4.08 16 22 C -0.07 -1.95 7.48 30.98 0.23 -1.72 16 23 H 0.23 6.65 7.80 -4.41 -0.03 6.62 16 24 H 0.09 3.79 6.61 -2.39 -0.02 3.78 16 25 H 0.10 3.24 6.48 -2.39 -0.02 3.22 16 26 H 0.27 13.09 8.31 -92.70 -0.77 12.32 16 27 H 0.13 3.26 7.05 -2.39 -0.02 3.25 16 28 H 0.07 2.44 5.49 -2.39 -0.01 2.42 16 29 H 0.13 2.95 8.14 -2.38 -0.02 2.93 16 30 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 31 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 32 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.07 2.38 7.40 -2.39 -0.02 2.37 16 Total: -1.00 -63.61 292.36 7.83 -55.78 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 1.14 Total: 19.31 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 4.60 Total: -10.08 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -1.47 Total: -67.03 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.05 Total: -32.85 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 1.58 Total: -8.32 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -63.61 7.83 -55.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847177857.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.367 kcal (2) G-P(sol) polarization free energy of solvation -63.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds