Wall clock time and date at job start Mon Mar 30 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35106 * 126.40859 * 2 1 4 4 Cl 1.73602 * 125.66161 * 0.02562 * 3 2 1 5 5 N 1.30615 * 108.67192 * 180.02562 * 3 2 1 6 6 C 1.34206 * 109.25799 * 359.76902 * 5 3 2 7 7 C 1.34606 * 108.04734 * 0.37615 * 6 5 3 8 8 C 1.50698 * 126.58119 * 179.89747 * 7 6 5 9 9 N 1.46904 * 109.47217 * 94.68397 * 8 7 6 10 10 C 1.46904 * 110.99787 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46561 * 185.18364 * 10 9 8 12 12 C 1.50701 * 115.54929 * 297.13105 * 11 10 9 13 13 H 1.08001 * 119.99939 * 95.22291 * 12 11 10 14 14 C 1.37878 * 120.00209 * 275.21506 * 12 11 10 15 15 N 1.31511 * 119.99602 * 7.10871 * 14 12 11 16 16 Si 1.86794 * 119.99960 * 187.10386 * 14 12 11 17 17 H 1.48504 * 109.47027 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47318 * 300.00392 * 16 14 12 19 19 H 1.48500 * 109.46957 * 60.00398 * 16 14 12 20 20 C 1.53003 * 117.50047 * 82.80788 * 11 10 9 21 21 C 1.53004 * 117.49784 * 151.46586 * 11 10 9 22 22 H 1.09006 * 109.47424 * 269.99498 * 1 2 3 23 23 H 1.08998 * 109.47674 * 30.00094 * 1 2 3 24 24 H 1.08999 * 109.47587 * 149.99905 * 1 2 3 25 25 H 1.07997 * 125.97331 * 180.28050 * 6 5 3 26 26 H 1.09005 * 109.47183 * 334.68968 * 8 7 6 27 27 H 1.08995 * 109.47302 * 214.68690 * 8 7 6 28 28 H 1.00891 * 111.00013 * 303.95827 * 9 8 7 29 29 H 1.08992 * 109.46989 * 65.18308 * 10 9 8 30 30 H 1.08996 * 109.47041 * 305.18019 * 10 9 8 31 31 H 0.96998 * 120.00629 * 355.39595 * 15 14 12 32 32 H 1.09000 * 117.49909 * 215.00160 * 20 11 10 33 33 H 1.09002 * 117.49610 * 0.02562 * 20 11 10 34 34 H 1.09010 * 117.49663 * 359.97438 * 21 11 10 35 35 H 1.08997 * 117.50246 * 144.97048 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0873 0.0000 4 17 1.7324 2.7391 0.0006 5 7 3.5109 0.6894 -0.0006 6 6 3.5466 -0.6521 0.0042 7 6 2.2783 -1.1030 -0.0006 8 6 1.8374 -2.5441 -0.0001 9 7 1.5799 -2.9769 1.3800 10 6 1.1476 -4.3803 1.4195 11 6 0.7660 -4.7561 2.8527 12 6 1.8828 -4.6864 3.8622 13 1 2.0147 -3.7973 4.4611 14 6 2.7360 -5.7577 4.0215 15 7 2.6652 -6.7824 3.2002 16 14 3.9925 -5.7535 5.4036 17 1 4.7827 -7.0100 5.3581 18 1 4.9024 -4.5910 5.2419 19 1 3.2918 -5.6558 6.7093 20 6 -0.6407 -4.3881 3.3288 21 6 -0.2880 -5.8493 3.0396 22 1 -0.3634 -0.0001 1.0277 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 4.4371 -1.2631 0.0092 26 1 2.6214 -3.1641 -0.4349 27 1 0.9256 -2.6453 -0.5887 28 1 2.3915 -2.8323 1.9616 29 1 1.9617 -5.0209 1.0804 30 1 0.2847 -4.5132 0.7670 31 1 1.9700 -6.8154 2.5245 32 1 -0.7585 -4.0956 4.3722 33 1 -1.2945 -3.8787 2.6208 34 1 -0.7099 -6.3005 2.1414 35 1 -0.1735 -6.5183 3.8924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848550254.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:13 Heat of formation + Delta-G solvation = 76.022880 kcal Electronic energy + Delta-G solvation = -18224.205048 eV Core-core repulsion = 15284.822216 eV Total energy + Delta-G solvation = -2939.382832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.12535 -37.35980 -37.02014 -34.83537 -34.04095 -31.88747 -30.06891 -27.10695 -26.20311 -24.80802 -23.20585 -21.55278 -21.20600 -20.12082 -19.35512 -17.38995 -16.51676 -16.06662 -15.55136 -14.64241 -14.35167 -13.98369 -13.82757 -13.73826 -13.42477 -13.22706 -12.80702 -12.54581 -12.24912 -11.86548 -11.81645 -11.58989 -11.41234 -10.86614 -10.73201 -10.42063 -10.12928 -10.07116 -9.70472 -9.55735 -8.58411 -8.45840 -8.37662 -8.23309 -7.78686 -6.37058 -4.11126 1.27737 1.83649 2.86119 2.99373 3.42528 3.43781 3.62097 4.48572 4.54395 4.62967 4.78502 5.03074 5.16345 5.26143 5.32270 5.35984 5.42454 5.65670 5.69772 5.89383 6.19700 6.22359 6.29534 6.48160 6.54961 6.60913 6.64057 6.82751 6.88520 7.21460 7.27306 7.69237 7.82402 8.01121 8.27707 8.41931 8.86776 9.63788 11.01927 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.023231 B = 0.004615 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.977357 B = 6065.605972 C = 6605.314394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.434 5.434 3 C 0.232 3.768 4 Cl 0.023 6.977 5 N -0.466 5.466 6 C -0.015 4.015 7 C 0.014 3.986 8 C 0.128 3.872 9 N -0.675 5.675 10 C 0.101 3.899 11 C 0.029 3.971 12 C -0.570 4.570 13 H 0.052 0.948 14 C 0.027 3.973 15 N -0.906 5.906 16 Si 1.064 2.936 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.289 1.289 20 C -0.185 4.185 21 C -0.184 4.184 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.179 0.821 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.356 0.644 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.274 0.726 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 12.120 -8.345 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.120 5.120 3 C -0.054 4.054 4 Cl 0.050 6.950 5 N -0.188 5.188 6 C -0.164 4.164 7 C -0.101 4.101 8 C -0.002 4.002 9 N -0.308 5.308 10 C -0.028 4.028 11 C 0.028 3.972 12 C -0.608 4.608 13 H 0.071 0.929 14 C -0.179 4.179 15 N -0.541 5.541 16 Si 0.892 3.108 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.215 1.215 20 C -0.222 4.222 21 C -0.223 4.223 22 H 0.105 0.895 23 H 0.102 0.898 24 H 0.110 0.890 25 H 0.196 0.804 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.176 0.824 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.466 12.165 -7.691 14.804 hybrid contribution -1.397 0.114 -0.775 1.601 sum -4.863 12.279 -8.466 15.687 Atomic orbital electron populations 1.22106 0.75902 1.04389 1.04694 1.44996 1.07940 1.05083 1.54002 1.22910 0.86774 0.83825 1.11886 1.98389 1.89021 1.10128 1.97414 1.70169 1.16636 1.12540 1.19414 1.22131 0.96332 0.89720 1.08219 1.21331 0.90458 0.89443 1.08886 1.20320 1.00010 0.86565 0.93313 1.60480 1.41620 1.22203 1.06451 1.21540 0.97410 0.86409 0.97406 1.19012 0.88584 0.97092 0.92508 1.21269 1.14575 1.03275 1.21704 0.92947 1.25745 0.99427 0.92812 0.99873 1.70749 1.33051 1.32294 1.17998 0.83611 0.75800 0.76062 0.75307 1.20900 1.21401 1.21508 1.22746 1.01653 0.97680 1.00136 1.22788 1.06732 0.91494 1.01241 0.89462 0.89791 0.89007 0.80414 0.92772 0.90939 0.82407 0.95108 0.94140 0.91479 0.90600 0.91633 0.91809 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.84 59.84 0.65 1.36 16 2 N -0.43 -5.87 3.16 -117.78 -0.37 -6.24 16 3 C 0.23 3.37 8.51 -90.22 -0.77 2.60 16 4 Cl 0.02 0.27 28.77 -51.86 -1.49 -1.23 16 5 N -0.47 -7.62 11.26 -11.74 -0.13 -7.75 16 6 C -0.02 -0.23 11.79 -17.80 -0.21 -0.44 16 7 C 0.01 0.21 6.47 -81.55 -0.53 -0.32 16 8 C 0.13 1.87 5.92 -4.97 -0.03 1.84 16 9 N -0.67 -12.23 6.45 -115.06 -0.74 -12.97 16 10 C 0.10 2.07 5.46 -3.82 -0.02 2.04 16 11 C 0.03 0.67 1.14 -155.66 -0.18 0.49 16 12 C -0.57 -15.00 8.24 -34.44 -0.28 -15.28 16 13 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16 14 C 0.03 0.73 5.39 -17.82 -0.10 0.63 16 15 N -0.91 -25.71 13.57 55.43 0.75 -24.96 16 16 Si 1.06 24.35 29.91 -169.99 -5.08 19.27 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.18 -3.93 9.96 -26.69 -0.27 -4.20 16 21 C -0.18 -4.12 8.74 -26.69 -0.23 -4.36 16 22 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.08 0.65 7.81 -51.93 -0.41 0.25 16 24 H 0.09 0.83 7.31 -51.93 -0.38 0.45 16 25 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.95 7.38 -51.93 -0.38 0.57 16 28 H 0.36 7.16 8.21 -39.30 -0.32 6.84 16 29 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 30 H 0.04 0.76 8.09 -51.93 -0.42 0.34 16 31 H 0.27 7.68 6.20 -40.82 -0.25 7.43 16 32 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 35 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 314.44 15.07 4.74 4.74 Total: -1.00 -29.42 314.44 -9.03 -38.45 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.74 Total: 6.31 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.96 Total: -15.62 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.49 Total: -51.93 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.08 Total: 19.27 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.49 Total: -1.23 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.42 -9.03 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848550254.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.471 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds