Wall clock time and date at job start Mon Mar 30 2020 05:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35106 * 126.40859 * 2 1 4 4 Cl 1.73602 * 125.66161 * 0.02562 * 3 2 1 5 5 N 1.30615 * 108.67192 * 180.02562 * 3 2 1 6 6 C 1.34206 * 109.25799 * 359.76902 * 5 3 2 7 7 C 1.34606 * 108.04734 * 0.37615 * 6 5 3 8 8 C 1.50698 * 126.58119 * 179.89747 * 7 6 5 9 9 N 1.46904 * 109.47217 * 94.68397 * 8 7 6 10 10 C 1.46904 * 110.99787 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46561 * 185.18364 * 10 9 8 12 12 C 1.50701 * 115.54929 * 297.13105 * 11 10 9 13 13 H 1.08001 * 119.99939 * 95.22291 * 12 11 10 14 14 C 1.37878 * 120.00209 * 275.21506 * 12 11 10 15 15 N 1.31511 * 119.99602 * 7.10871 * 14 12 11 16 16 Si 1.86794 * 119.99960 * 187.10386 * 14 12 11 17 17 H 1.48504 * 109.47027 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47318 * 300.00392 * 16 14 12 19 19 H 1.48500 * 109.46957 * 60.00398 * 16 14 12 20 20 C 1.53003 * 117.50047 * 82.80788 * 11 10 9 21 21 C 1.53004 * 117.49784 * 151.46586 * 11 10 9 22 22 H 1.09006 * 109.47424 * 269.99498 * 1 2 3 23 23 H 1.08998 * 109.47674 * 30.00094 * 1 2 3 24 24 H 1.08999 * 109.47587 * 149.99905 * 1 2 3 25 25 H 1.07997 * 125.97331 * 180.28050 * 6 5 3 26 26 H 1.09005 * 109.47183 * 334.68968 * 8 7 6 27 27 H 1.08995 * 109.47302 * 214.68690 * 8 7 6 28 28 H 1.00891 * 111.00013 * 303.95827 * 9 8 7 29 29 H 1.08992 * 109.46989 * 65.18308 * 10 9 8 30 30 H 1.08996 * 109.47041 * 305.18019 * 10 9 8 31 31 H 0.96998 * 120.00629 * 355.39595 * 15 14 12 32 32 H 1.09000 * 117.49909 * 215.00160 * 20 11 10 33 33 H 1.09002 * 117.49610 * 0.02562 * 20 11 10 34 34 H 1.09010 * 117.49663 * 359.97438 * 21 11 10 35 35 H 1.08997 * 117.50246 * 144.97048 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0873 0.0000 4 17 1.7324 2.7391 0.0006 5 7 3.5109 0.6894 -0.0006 6 6 3.5466 -0.6521 0.0042 7 6 2.2783 -1.1030 -0.0006 8 6 1.8374 -2.5441 -0.0001 9 7 1.5799 -2.9769 1.3800 10 6 1.1476 -4.3803 1.4195 11 6 0.7660 -4.7561 2.8527 12 6 1.8828 -4.6864 3.8622 13 1 2.0147 -3.7973 4.4611 14 6 2.7360 -5.7577 4.0215 15 7 2.6652 -6.7824 3.2002 16 14 3.9925 -5.7535 5.4036 17 1 4.7827 -7.0100 5.3581 18 1 4.9024 -4.5910 5.2419 19 1 3.2918 -5.6558 6.7093 20 6 -0.6407 -4.3881 3.3288 21 6 -0.2880 -5.8493 3.0396 22 1 -0.3634 -0.0001 1.0277 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 4.4371 -1.2631 0.0092 26 1 2.6214 -3.1641 -0.4349 27 1 0.9256 -2.6453 -0.5887 28 1 2.3915 -2.8323 1.9616 29 1 1.9617 -5.0209 1.0804 30 1 0.2847 -4.5132 0.7670 31 1 1.9700 -6.8154 2.5245 32 1 -0.7585 -4.0956 4.3722 33 1 -1.2945 -3.8787 2.6208 34 1 -0.7099 -6.3005 2.1414 35 1 -0.1735 -6.5183 3.8924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848550254.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:12 Heat of formation + Delta-G solvation = 58.725844 kcal Electronic energy + Delta-G solvation = -18224.955104 eV Core-core repulsion = 15284.822216 eV Total energy + Delta-G solvation = -2940.132888 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.20924 -39.05793 -38.02488 -36.24595 -35.08955 -33.90145 -31.32177 -28.01494 -27.65598 -26.73765 -24.60656 -22.95690 -22.63552 -21.45513 -20.97590 -18.57387 -18.26273 -17.12777 -16.82151 -16.11520 -15.72490 -15.61736 -15.41369 -15.02397 -14.69967 -14.22136 -14.17497 -14.11169 -13.65947 -13.06659 -13.00514 -12.84873 -12.66262 -12.53626 -12.51853 -12.16473 -11.95576 -11.35563 -11.19919 -10.74873 -10.43957 -10.35830 -10.20295 -9.49319 -9.22571 -8.47822 -6.21390 0.23962 0.73657 1.56660 1.61533 1.80692 1.82708 1.91326 2.59767 3.16831 3.28254 3.52930 3.68493 3.80960 4.08061 4.12046 4.24834 4.30681 4.47481 4.53912 4.54951 4.64136 4.67606 4.79503 4.86450 4.91175 5.12754 5.16146 5.47929 5.50614 5.53470 5.81458 6.18581 6.25444 6.32661 6.46137 6.72220 6.80579 7.58348 8.92263 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.023231 B = 0.004615 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.977357 B = 6065.605972 C = 6605.314394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.432 5.432 3 C 0.226 3.774 4 Cl 0.046 6.954 5 N -0.499 5.499 6 C -0.030 4.030 7 C 0.009 3.991 8 C 0.135 3.865 9 N -0.673 5.673 10 C 0.116 3.884 11 C 0.002 3.998 12 C -0.573 4.573 13 H 0.037 0.963 14 C -0.015 4.015 15 N -0.932 5.932 16 Si 1.102 2.898 17 H -0.288 1.288 18 H -0.275 1.275 19 H -0.279 1.279 20 C -0.165 4.165 21 C -0.186 4.186 22 H 0.086 0.914 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.187 0.813 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.342 0.658 29 H 0.004 0.996 30 H 0.063 0.937 31 H 0.267 0.733 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 13.196 -8.959 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.117 5.117 3 C -0.061 4.061 4 Cl 0.074 6.926 5 N -0.221 5.221 6 C -0.179 4.179 7 C -0.107 4.107 8 C 0.005 3.995 9 N -0.304 5.304 10 C -0.013 4.013 11 C 0.001 3.999 12 C -0.611 4.611 13 H 0.055 0.945 14 C -0.216 4.216 15 N -0.569 5.569 16 Si 0.926 3.074 17 H -0.214 1.214 18 H -0.201 1.201 19 H -0.205 1.205 20 C -0.202 4.202 21 C -0.224 4.224 22 H 0.104 0.896 23 H 0.125 0.875 24 H 0.123 0.877 25 H 0.204 0.796 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.160 0.840 29 H 0.022 0.978 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.593 13.263 -8.315 16.314 hybrid contribution -1.121 -0.122 -0.588 1.272 sum -5.715 13.141 -8.904 16.871 Atomic orbital electron populations 1.22391 0.73825 1.06278 1.05195 1.45183 1.09161 1.04396 1.53007 1.23198 0.86723 0.85073 1.11061 1.98395 1.88688 1.08276 1.97284 1.70133 1.18039 1.13124 1.20788 1.22411 0.97234 0.89781 1.08427 1.21268 0.90493 0.89671 1.09264 1.20318 1.01218 0.86468 0.91447 1.60465 1.41009 1.20587 1.08364 1.21277 0.97270 0.87087 0.95661 1.19160 0.88626 0.98511 0.93606 1.21477 1.15359 1.02387 1.21915 0.94467 1.26796 1.01101 0.92622 1.01060 1.70841 1.33716 1.33302 1.19004 0.83091 0.74443 0.76175 0.73643 1.21358 1.20062 1.20496 1.22738 1.00464 0.96724 1.00291 1.22711 1.06867 0.91686 1.01132 0.89555 0.87503 0.87684 0.79631 0.92346 0.88826 0.84033 0.97762 0.91914 0.92264 0.91467 0.88816 0.89785 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 10.84 127.77 1.38 2.48 16 2 N -0.43 -10.83 3.16 -526.53 -1.66 -12.49 16 3 C 0.23 6.23 8.51 180.21 1.53 7.77 16 4 Cl 0.05 0.98 28.77 -2.72 -0.08 0.91 16 5 N -0.50 -15.95 11.26 -191.04 -2.15 -18.11 16 6 C -0.03 -0.89 11.79 83.50 0.98 0.09 16 7 C 0.01 0.26 6.47 40.91 0.26 0.52 16 8 C 0.14 3.67 5.92 85.56 0.51 4.18 16 9 N -0.67 -23.43 6.45 -517.93 -3.34 -26.78 16 10 C 0.12 4.59 5.46 86.30 0.47 5.06 16 11 C 0.00 0.08 1.14 -52.92 -0.06 0.02 16 12 C -0.57 -30.22 8.24 25.60 0.21 -30.01 16 13 H 0.04 2.03 7.82 -2.91 -0.02 2.00 16 14 C -0.02 -0.83 5.39 84.66 0.46 -0.37 16 15 N -0.93 -53.44 13.57 21.45 0.29 -53.15 16 16 Si 1.10 49.24 29.91 68.60 2.05 51.29 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 20 C -0.16 -6.70 9.96 30.62 0.30 -6.40 16 21 C -0.19 -8.13 8.74 30.62 0.27 -7.87 16 22 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.11 1.32 7.81 -2.39 -0.02 1.30 16 24 H 0.10 1.53 7.31 -2.39 -0.02 1.52 16 25 H 0.19 4.94 8.06 -2.91 -0.02 4.92 16 26 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.09 2.16 7.38 -2.39 -0.02 2.14 16 28 H 0.34 13.62 8.21 -89.70 -0.74 12.88 16 29 H 0.00 0.19 7.83 -2.39 -0.02 0.17 16 30 H 0.06 2.18 8.09 -2.39 -0.02 2.17 16 31 H 0.27 15.17 6.20 -92.71 -0.57 14.59 16 32 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 34 H 0.08 3.29 8.14 -2.38 -0.02 3.28 16 35 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -62.48 314.44 1.99 -60.49 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.55 Total: 22.36 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 6.32 Total: -24.52 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -6.87 Total: -110.52 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.05 Total: 51.29 kcal Atomic # 17 Polarization: 0.98 SS G_CDS: -0.08 Total: 0.91 kcal Total: -62.48 1.99 -60.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848550254.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.216 kcal (2) G-P(sol) polarization free energy of solvation -62.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds