Wall clock time and date at job start Mon Mar 30 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00016 * 2 1 4 4 N 1.46902 * 109.47033 * 124.04223 * 3 2 1 5 5 C 1.46900 * 110.99672 * 301.23431 * 4 3 2 6 6 C 1.50701 * 109.47170 * 288.51978 * 5 4 3 7 7 H 1.07997 * 119.99864 * 4.90508 * 6 5 4 8 8 C 1.37875 * 119.99947 * 184.90968 * 6 5 4 9 9 N 1.31511 * 120.00133 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99804 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47415 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46868 * 120.00288 * 10 8 6 13 13 H 1.48501 * 109.47022 * 239.99988 * 10 8 6 14 14 C 1.46899 * 111.00394 * 65.18997 * 4 3 2 15 15 C 1.50691 * 109.47275 * 68.77079 * 14 4 3 16 16 C 1.34602 * 126.58237 * 94.06381 * 15 14 4 17 17 N 1.34198 * 108.05315 * 179.89608 * 16 15 14 18 18 C 1.30615 * 109.25787 * 0.38380 * 17 16 15 19 19 Cl 1.73604 * 125.66853 * 179.76622 * 18 17 16 20 20 N 1.35109 * 108.66906 * 359.76107 * 18 17 16 21 21 C 1.46507 * 126.40446 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99773 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.00148 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.00068 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47311 * 4.03878 * 3 2 1 26 26 H 1.08998 * 109.46576 * 244.03874 * 3 2 1 27 27 H 1.09003 * 109.47517 * 48.51833 * 5 4 3 28 28 H 1.09005 * 109.47261 * 168.52242 * 5 4 3 29 29 H 0.97002 * 119.99938 * 180.02562 * 9 8 6 30 30 H 1.09002 * 109.46856 * 188.77770 * 14 4 3 31 31 H 1.09007 * 109.46617 * 308.77054 * 14 4 3 32 32 H 1.08005 * 125.97458 * 0.02562 * 16 15 14 33 33 H 1.08996 * 109.46980 * 274.24400 * 21 20 18 34 34 H 1.08994 * 109.47506 * 34.24952 * 21 20 18 35 35 H 1.09000 * 109.46415 * 154.24925 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9798 1.3415 1.1477 5 6 2.2463 1.1934 2.4118 6 6 1.4630 2.4508 2.6883 7 1 1.4422 3.2457 1.9576 8 6 0.7731 2.5863 3.8743 9 7 0.7981 1.6181 4.7640 10 14 -0.1973 4.1453 4.2175 11 1 -0.0648 5.0742 3.0666 12 1 -1.6287 3.8037 4.4163 13 1 0.3308 4.7975 5.4426 14 6 4.0232 0.3153 1.0211 15 6 4.9478 0.6761 -0.1128 16 6 6.1058 1.3557 -0.0184 17 7 6.6250 1.4660 -1.2509 18 6 5.8273 0.8868 -2.1078 19 17 6.0851 0.7843 -3.8215 20 7 4.7681 0.3806 -1.4389 21 6 3.6390 -0.3482 -2.0221 22 1 -0.5400 0.9354 -0.0004 23 1 -0.5400 -0.9352 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3574 2.1323 0.0724 26 1 2.6347 1.3947 -0.9240 27 1 1.5621 0.3480 2.3380 28 1 2.9526 1.0194 3.2235 29 1 0.3124 1.7134 5.5982 30 1 4.5915 0.2586 1.9495 31 1 3.5601 -0.6507 0.8190 32 1 6.5421 1.7426 0.8907 33 1 2.8863 0.3617 -2.3648 34 1 3.9877 -0.9437 -2.8659 35 1 3.2029 -1.0050 -1.2694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848913164.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:16 Heat of formation + Delta-G solvation = 92.063249 kcal Electronic energy + Delta-G solvation = -18662.591689 eV Core-core repulsion = 15723.904420 eV Total energy + Delta-G solvation = -2938.687269 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.07725 -37.59476 -36.92094 -34.08818 -32.92936 -32.52936 -30.08317 -27.40039 -26.89083 -26.01294 -23.83082 -21.42795 -21.18954 -20.05265 -19.00428 -17.20722 -16.38813 -16.18621 -15.46367 -14.83913 -14.52468 -14.40165 -14.07938 -13.78897 -13.26971 -13.18367 -12.69543 -12.41789 -12.16739 -11.85338 -11.63925 -11.53808 -11.24764 -11.02780 -10.83638 -10.71726 -10.54570 -10.03928 -9.92265 -9.59758 -9.32023 -8.92903 -8.46637 -8.16473 -7.38653 -6.06127 -4.06667 1.36260 1.95944 2.67444 2.92851 3.14865 3.28664 3.36842 3.41438 4.39958 4.61314 4.75036 4.94565 5.06213 5.18572 5.27287 5.31434 5.38066 5.47457 5.62203 5.84757 5.86362 6.00766 6.23228 6.34549 6.51446 6.77005 6.92672 6.95740 7.11556 7.15096 7.28038 7.73274 7.95247 7.98394 8.09461 8.44609 8.99737 9.57233 11.04597 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.004843 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.454463 B = 5780.312398 C = 6160.558983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.191 4.191 3 C 0.083 3.917 4 N -0.521 5.521 5 C 0.191 3.809 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.284 1.284 14 C 0.122 3.878 15 C 0.023 3.977 16 C -0.007 4.007 17 N -0.466 5.466 18 C 0.228 3.772 19 Cl 0.019 6.981 20 N -0.443 5.443 21 C 0.061 3.939 22 H 0.099 0.901 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.000 1.000 28 H 0.033 0.967 29 H 0.260 0.740 30 H 0.099 0.901 31 H 0.036 0.964 32 H 0.180 0.820 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 -6.047 -13.652 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.211 4.211 3 C -0.045 4.045 4 N -0.244 5.244 5 C 0.067 3.933 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.210 1.210 14 C -0.008 4.008 15 C -0.092 4.092 16 C -0.155 4.155 17 N -0.188 5.188 18 C -0.057 4.057 19 Cl 0.046 6.954 20 N -0.131 5.131 21 C -0.081 4.081 22 H 0.117 0.883 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.018 0.982 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.054 0.946 32 H 0.197 0.803 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.731 -5.315 -13.869 15.920 hybrid contribution -1.796 -0.487 0.297 1.885 sum 3.934 -5.802 -13.572 15.275 Atomic orbital electron populations 1.23753 0.95975 1.01395 0.99594 1.23566 0.96834 0.99500 1.01153 1.21427 0.94813 0.94526 0.93743 1.62481 1.12953 1.44625 1.04330 1.19819 0.92459 0.96970 0.84065 1.21110 1.28502 1.01976 1.02407 0.92027 1.24939 0.96863 0.96557 0.96057 1.69953 1.42989 1.32326 1.08526 0.86486 0.79530 0.83359 0.78326 1.19704 1.21191 1.20988 1.20575 0.92710 0.93785 0.93681 1.21487 0.99689 1.04693 0.83308 1.22064 0.94749 1.03633 0.95058 1.70163 1.28379 1.20134 1.00153 1.22856 0.89429 1.05377 0.88079 1.98381 1.95915 1.97281 1.03787 1.45096 1.18126 1.42838 1.07006 1.22375 0.88005 0.97377 1.00304 0.88281 0.89463 0.88691 0.89651 0.92238 0.98211 0.94930 0.93001 0.88328 0.94617 0.80293 0.89518 0.89791 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 14.32 29.01 0.42 -2.20 16 2 C -0.19 -2.99 6.14 -36.02 -0.22 -3.21 16 3 C 0.08 1.46 5.12 -4.97 -0.03 1.43 16 4 N -0.52 -10.32 4.63 -238.96 -1.11 -11.43 16 5 C 0.19 4.62 4.57 -4.98 -0.02 4.59 16 6 C -0.50 -13.45 8.68 -34.44 -0.30 -13.75 16 7 H 0.06 1.67 7.30 -52.49 -0.38 1.29 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.80 13.29 55.43 0.74 -25.07 16 10 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.12 2.00 5.08 -4.98 -0.03 1.97 16 15 C 0.02 0.36 5.80 -81.55 -0.47 -0.11 16 16 C -0.01 -0.11 11.79 -17.80 -0.21 -0.32 16 17 N -0.47 -7.84 11.26 -11.73 -0.13 -7.98 16 18 C 0.23 3.39 8.51 -90.22 -0.77 2.62 16 19 Cl 0.02 0.22 28.87 -51.86 -1.50 -1.27 16 20 N -0.44 -6.19 2.83 -117.78 -0.33 -6.52 16 21 C 0.06 0.65 8.70 59.85 0.52 1.17 16 22 H 0.10 1.60 7.84 -52.48 -0.41 1.19 16 23 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 24 H 0.10 1.35 5.32 -52.49 -0.28 1.07 16 25 H 0.09 1.68 6.82 -51.93 -0.35 1.33 16 26 H 0.06 0.95 4.24 -51.93 -0.22 0.73 16 27 H 0.00 0.00 6.68 -51.93 -0.35 -0.34 16 28 H 0.03 0.85 7.78 -51.93 -0.40 0.45 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.10 1.60 7.80 -51.93 -0.41 1.19 16 31 H 0.04 0.55 5.56 -51.92 -0.29 0.26 16 32 H 0.18 2.58 8.06 -52.48 -0.42 2.16 16 33 H 0.09 0.89 6.74 -51.93 -0.35 0.54 16 34 H 0.08 0.70 7.94 -51.93 -0.41 0.29 16 35 H 0.09 0.97 4.98 -51.93 -0.26 0.71 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -29.99 299.32 -8.14 -38.13 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.09 Total: -0.23 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -1.21 Total: -6.34 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.83 Total: -50.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.50 Total: -1.27 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.99 -8.14 -38.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848913164.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.195 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds