Wall clock time and date at job start Mon Mar 30 2020 05:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00016 * 2 1 4 4 N 1.46902 * 109.47033 * 124.04223 * 3 2 1 5 5 C 1.46900 * 110.99672 * 301.23431 * 4 3 2 6 6 C 1.50701 * 109.47170 * 288.51978 * 5 4 3 7 7 H 1.07997 * 119.99864 * 4.90508 * 6 5 4 8 8 C 1.37875 * 119.99947 * 184.90968 * 6 5 4 9 9 N 1.31511 * 120.00133 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99804 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47415 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46868 * 120.00288 * 10 8 6 13 13 H 1.48501 * 109.47022 * 239.99988 * 10 8 6 14 14 C 1.46899 * 111.00394 * 65.18997 * 4 3 2 15 15 C 1.50691 * 109.47275 * 68.77079 * 14 4 3 16 16 C 1.34602 * 126.58237 * 94.06381 * 15 14 4 17 17 N 1.34198 * 108.05315 * 179.89608 * 16 15 14 18 18 C 1.30615 * 109.25787 * 0.38380 * 17 16 15 19 19 Cl 1.73604 * 125.66853 * 179.76622 * 18 17 16 20 20 N 1.35109 * 108.66906 * 359.76107 * 18 17 16 21 21 C 1.46507 * 126.40446 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99773 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.00148 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.00068 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47311 * 4.03878 * 3 2 1 26 26 H 1.08998 * 109.46576 * 244.03874 * 3 2 1 27 27 H 1.09003 * 109.47517 * 48.51833 * 5 4 3 28 28 H 1.09005 * 109.47261 * 168.52242 * 5 4 3 29 29 H 0.97002 * 119.99938 * 180.02562 * 9 8 6 30 30 H 1.09002 * 109.46856 * 188.77770 * 14 4 3 31 31 H 1.09007 * 109.46617 * 308.77054 * 14 4 3 32 32 H 1.08005 * 125.97458 * 0.02562 * 16 15 14 33 33 H 1.08996 * 109.46980 * 274.24400 * 21 20 18 34 34 H 1.08994 * 109.47506 * 34.24952 * 21 20 18 35 35 H 1.09000 * 109.46415 * 154.24925 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9798 1.3415 1.1477 5 6 2.2463 1.1934 2.4118 6 6 1.4630 2.4508 2.6883 7 1 1.4422 3.2457 1.9576 8 6 0.7731 2.5863 3.8743 9 7 0.7981 1.6181 4.7640 10 14 -0.1973 4.1453 4.2175 11 1 -0.0648 5.0742 3.0666 12 1 -1.6287 3.8037 4.4163 13 1 0.3308 4.7975 5.4426 14 6 4.0232 0.3153 1.0211 15 6 4.9478 0.6761 -0.1128 16 6 6.1058 1.3557 -0.0184 17 7 6.6250 1.4660 -1.2509 18 6 5.8273 0.8868 -2.1078 19 17 6.0851 0.7843 -3.8215 20 7 4.7681 0.3806 -1.4389 21 6 3.6390 -0.3482 -2.0221 22 1 -0.5400 0.9354 -0.0004 23 1 -0.5400 -0.9352 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3574 2.1323 0.0724 26 1 2.6347 1.3947 -0.9240 27 1 1.5621 0.3480 2.3380 28 1 2.9526 1.0194 3.2235 29 1 0.3124 1.7134 5.5982 30 1 4.5915 0.2586 1.9495 31 1 3.5601 -0.6507 0.8190 32 1 6.5421 1.7426 0.8907 33 1 2.8863 0.3617 -2.3648 34 1 3.9877 -0.9437 -2.8659 35 1 3.2029 -1.0050 -1.2694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848913164.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:15 Heat of formation + Delta-G solvation = 73.762971 kcal Electronic energy + Delta-G solvation = -18663.385249 eV Core-core repulsion = 15723.904420 eV Total energy + Delta-G solvation = -2939.480829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.23571 -39.07878 -37.96190 -35.27138 -34.70440 -34.00740 -31.51210 -29.03054 -28.04590 -27.33981 -25.54733 -22.87996 -22.52844 -21.28314 -20.31422 -18.43129 -18.18660 -17.48620 -16.91184 -16.40948 -15.90225 -15.79265 -15.35220 -15.32802 -14.51287 -14.18253 -14.14187 -13.84904 -13.47008 -13.20859 -12.99285 -12.85121 -12.67809 -12.60788 -12.50025 -12.18464 -12.15637 -11.90152 -11.34386 -11.12093 -10.70670 -10.57533 -10.21605 -9.38378 -8.95824 -8.15388 -6.22681 0.27193 0.78804 1.40296 1.42882 1.43530 1.54792 1.87220 1.95087 2.43249 3.17633 3.41012 3.67033 3.74378 3.94194 4.02833 4.15805 4.26586 4.36605 4.47170 4.54308 4.69652 4.73061 4.95270 5.04810 5.19848 5.25318 5.34314 5.57714 5.67912 5.70365 5.84823 5.90046 6.10879 6.37756 6.60466 6.78319 6.91470 7.45632 8.94788 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.004843 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.454463 B = 5780.312398 C = 6160.558983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.194 4.194 3 C 0.088 3.912 4 N -0.535 5.535 5 C 0.210 3.790 6 C -0.512 4.512 7 H 0.054 0.946 8 C 0.009 3.991 9 N -0.930 5.930 10 Si 0.957 3.043 11 H -0.269 1.269 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.129 3.871 15 C 0.016 3.984 16 C -0.019 4.019 17 N -0.497 5.497 18 C 0.228 3.772 19 Cl 0.046 6.954 20 N -0.439 5.439 21 C 0.053 3.947 22 H 0.086 0.914 23 H 0.110 0.890 24 H 0.116 0.884 25 H 0.058 0.942 26 H 0.078 0.922 27 H -0.015 1.015 28 H 0.007 0.993 29 H 0.262 0.738 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.186 0.814 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 -6.466 -15.065 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.213 4.213 3 C -0.040 4.040 4 N -0.257 5.257 5 C 0.084 3.916 6 C -0.550 4.550 7 H 0.072 0.928 8 C -0.189 4.189 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.207 1.207 14 C 0.000 4.000 15 C -0.100 4.100 16 C -0.167 4.167 17 N -0.219 5.219 18 C -0.059 4.059 19 Cl 0.073 6.927 20 N -0.126 5.126 21 C -0.088 4.088 22 H 0.105 0.895 23 H 0.128 0.872 24 H 0.134 0.866 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.003 0.997 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.203 0.797 33 H 0.110 0.890 34 H 0.128 0.872 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.395 -5.743 -15.313 17.221 hybrid contribution -1.655 -0.377 0.621 1.808 sum 3.739 -6.120 -14.692 16.349 Atomic orbital electron populations 1.23909 0.96110 1.01950 0.98931 1.23529 0.96908 0.99220 1.01645 1.21339 0.94390 0.94788 0.93463 1.62305 1.13506 1.46609 1.03316 1.19403 0.91479 0.95255 0.85466 1.21393 1.28697 1.02686 1.02265 0.92814 1.25697 0.97865 0.99406 0.95969 1.70055 1.43990 1.34110 1.08983 0.85520 0.78280 0.79844 0.78089 1.19287 1.20534 1.20722 1.20473 0.91811 0.93500 0.94207 1.21227 0.99442 1.05392 0.83900 1.22306 0.95202 1.03772 0.95432 1.70142 1.29579 1.21523 1.00655 1.23157 0.89170 1.04342 0.89206 1.98392 1.95818 1.97125 1.01331 1.45221 1.18587 1.42440 1.06340 1.22659 0.87197 0.97614 1.01284 0.89526 0.87213 0.86630 0.92347 0.90423 0.99697 0.97482 0.92873 0.88613 0.93037 0.79700 0.88990 0.87181 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.06 14.32 67.78 0.97 -4.08 16 2 C -0.19 -5.76 6.14 25.65 0.16 -5.60 16 3 C 0.09 3.02 5.12 85.56 0.44 3.46 16 4 N -0.53 -21.10 4.63 -909.93 -4.21 -25.31 16 5 C 0.21 10.26 4.57 85.56 0.39 10.65 16 6 C -0.51 -27.77 8.68 25.60 0.22 -27.55 16 7 H 0.05 2.94 7.30 -2.91 -0.02 2.92 16 8 C 0.01 0.48 5.46 84.65 0.46 0.94 16 9 N -0.93 -53.91 13.29 21.45 0.28 -53.63 16 10 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 C 0.13 4.13 5.08 85.55 0.43 4.57 16 15 C 0.02 0.48 5.80 40.91 0.24 0.72 16 16 C -0.02 -0.60 11.79 83.50 0.98 0.38 16 17 N -0.50 -16.24 11.26 -191.04 -2.15 -18.39 16 18 C 0.23 6.36 8.51 180.21 1.53 7.90 16 19 Cl 0.05 0.98 28.87 -2.72 -0.08 0.90 16 20 N -0.44 -11.39 2.83 -526.53 -1.49 -12.88 16 21 C 0.05 0.96 8.70 127.77 1.11 2.07 16 22 H 0.09 2.76 7.84 -2.91 -0.02 2.74 16 23 H 0.11 2.73 8.06 -2.91 -0.02 2.71 16 24 H 0.12 2.97 5.32 -2.91 -0.02 2.95 16 25 H 0.06 2.31 6.82 -2.39 -0.02 2.30 16 26 H 0.08 2.36 4.24 -2.39 -0.01 2.35 16 27 H -0.01 -0.75 6.68 -2.39 -0.02 -0.77 16 28 H 0.01 0.38 7.78 -2.38 -0.02 0.36 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.10 3.10 7.80 -2.39 -0.02 3.08 16 31 H 0.05 1.49 5.56 -2.38 -0.01 1.48 16 32 H 0.19 5.36 8.06 -2.91 -0.02 5.34 16 33 H 0.09 1.62 6.74 -2.39 -0.02 1.60 16 34 H 0.11 1.44 7.94 -2.39 -0.02 1.42 16 35 H 0.10 1.74 4.98 -2.39 -0.01 1.73 16 Total: -1.00 -63.69 299.32 2.43 -61.26 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.10 Total: 8.98 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 6.94 Total: -6.55 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -7.57 Total: -110.20 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 17 Polarization: 0.98 SS G_CDS: -0.08 Total: 0.90 kcal Total: -63.69 2.43 -61.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848913164.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.022 kcal (2) G-P(sol) polarization free energy of solvation -63.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds