Wall clock time and date at job start Mon Mar 30 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39549 * 120.14154 * 315.27687 * 3 2 1 5 5 C 1.37956 * 119.85246 * 179.74450 * 4 3 2 6 6 C 1.38363 * 120.14292 * 0.28339 * 5 4 3 7 7 C 1.38321 * 120.28648 * 359.97360 * 6 5 4 8 8 C 1.37989 * 120.14293 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.07207 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47254 * 264.99888 * 9 8 7 11 11 O 1.21283 * 119.99645 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00036 * 179.97438 * 10 9 8 13 13 C 1.47066 * 136.06157 * 359.63080 * 12 10 9 14 14 C 1.53754 * 87.89046 * 152.95988 * 13 12 10 15 15 C 1.50703 * 114.26514 * 139.79364 * 14 13 12 16 16 H 1.07998 * 119.99575 * 266.47661 * 15 14 13 17 17 C 1.37880 * 120.00138 * 86.47817 * 15 14 13 18 18 N 1.31512 * 119.99983 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99896 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46914 * 89.99855 * 19 17 15 21 21 H 1.48491 * 109.47291 * 209.99855 * 19 17 15 22 22 H 1.48502 * 109.46921 * 330.00287 * 19 17 15 23 23 C 1.47071 * 136.05602 * 179.97438 * 12 10 9 24 24 H 4.52075 * 14.02059 * 359.97438 * 4 2 1 25 25 H 1.08002 * 120.07578 * 0.03126 * 4 3 2 26 26 H 1.07999 * 119.92639 * 180.25232 * 5 4 3 27 27 H 1.07998 * 119.85538 * 179.97438 * 6 5 4 28 28 H 1.08004 * 119.92332 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.47258 * 24.99795 * 9 8 7 30 30 H 1.09000 * 109.47291 * 144.99888 * 9 8 7 31 31 H 1.08995 * 113.46994 * 267.69498 * 13 12 10 32 32 H 1.09005 * 113.46599 * 38.13585 * 13 12 10 33 33 H 1.09001 * 114.39533 * 272.68065 * 14 13 12 34 34 H 0.96994 * 120.00035 * 179.97438 * 18 17 15 35 35 H 1.08995 * 113.46749 * 321.87406 * 23 12 10 36 36 H 1.09009 * 113.46155 * 92.25311 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3071 -0.8565 0.8492 5 6 4.6866 -0.8547 0.8405 6 6 5.3750 -0.0014 -0.0035 7 6 4.6860 0.8544 -0.8438 8 6 3.3061 0.8624 -0.8448 9 6 2.5571 1.7959 -1.7605 10 6 2.2049 3.0567 -1.0140 11 8 2.5306 3.1849 0.1472 12 7 1.5290 4.0423 -1.6370 13 6 0.9834 4.2644 -2.9845 14 6 -0.0621 5.1936 -2.3463 15 6 -0.3520 6.4395 -3.1431 16 1 0.1850 7.3525 -2.9320 17 6 -1.3026 6.4139 -4.1415 18 7 -1.5558 7.5012 -4.8364 19 14 -2.2307 4.8345 -4.5069 20 1 -3.4605 4.7796 -3.6763 21 1 -2.6023 4.7999 -5.9442 22 1 -1.3673 3.6684 -4.1905 23 6 1.0176 5.3716 -1.2702 24 1 -1.0500 -0.0002 0.0009 25 1 2.7710 -1.5231 1.5084 26 1 5.2304 -1.5205 1.4943 27 1 6.4550 -0.0035 -0.0062 28 1 5.2293 1.5184 -1.4999 29 1 3.1831 2.0440 -2.6177 30 1 1.6439 1.3110 -2.1058 31 1 1.6729 4.7807 -3.6524 32 1 0.5539 3.3681 -3.4321 33 1 -0.9616 4.6866 -1.9970 34 1 -2.2243 7.4831 -5.5390 35 1 0.6175 5.4184 -0.2574 36 1 1.7167 6.1799 -1.4849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855471393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:05 Heat of formation + Delta-G solvation = 79.069991 kcal Electronic energy + Delta-G solvation = -19328.349184 eV Core-core repulsion = 16359.238583 eV Total energy + Delta-G solvation = -2969.110601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05279 -39.11480 -37.15713 -33.94301 -32.74493 -32.59457 -30.29366 -29.86372 -27.61333 -25.17150 -25.00033 -23.34609 -21.86955 -20.16841 -18.86177 -18.24988 -17.21755 -16.55118 -16.36585 -15.78221 -15.45476 -14.90637 -14.80825 -14.11266 -13.75219 -13.62235 -13.21761 -13.06063 -12.84870 -12.28266 -12.12705 -11.84793 -11.59688 -11.50986 -11.29857 -11.16072 -10.87784 -10.71238 -10.42028 -10.12253 -9.86693 -9.40811 -9.22099 -8.85921 -8.68737 -8.48931 -8.04725 -6.23532 -4.26311 0.89530 1.27758 2.75740 2.99989 3.06081 3.18609 3.27420 3.28142 3.43830 3.98038 4.26819 4.28214 4.63929 4.76975 4.91181 4.97036 5.03832 5.15759 5.35384 5.43149 5.55860 5.64521 5.72934 5.88582 5.95610 6.03588 6.10925 6.23133 6.29938 6.33033 6.36804 6.40167 6.48672 6.53304 6.85296 7.11863 7.52221 7.54285 8.29985 8.38823 8.63090 8.80294 9.37468 10.88516 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030187 B = 0.004435 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.336842 B = 6312.390958 C = 6729.288046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.146 4.146 3 C 0.023 3.977 4 C -0.097 4.097 5 C -0.124 4.124 6 C -0.110 4.110 7 C -0.108 4.108 8 C -0.034 4.034 9 C -0.102 4.102 10 C 0.538 3.462 11 O -0.551 6.551 12 N -0.647 5.647 13 C 0.083 3.917 14 C -0.006 4.006 15 C -0.513 4.513 16 H 0.080 0.920 17 C 0.077 3.923 18 N -0.892 5.892 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.261 1.261 23 C 0.114 3.886 24 H 0.223 0.777 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.267 0.733 35 H 0.060 0.940 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.890 -16.475 5.715 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.146 4.146 3 C 0.023 3.977 4 C -0.115 4.115 5 C -0.142 4.142 6 C -0.128 4.128 7 C -0.126 4.126 8 C -0.035 4.035 9 C -0.141 4.141 10 C 0.327 3.673 11 O -0.430 6.430 12 N -0.381 5.381 13 C -0.039 4.039 14 C -0.025 4.025 15 C -0.551 4.551 16 H 0.098 0.902 17 C -0.126 4.126 18 N -0.528 5.528 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.185 1.185 23 C -0.007 4.007 24 H 0.240 0.760 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.075 -16.488 6.275 19.839 hybrid contribution -0.720 -0.707 -0.409 1.089 sum 8.354 -17.196 5.866 19.997 Atomic orbital electron populations 1.24886 0.95790 0.99543 0.99024 1.19956 0.92034 1.01148 1.01480 1.15792 0.86577 0.97651 0.97667 1.21125 0.94229 0.98244 0.97880 1.21020 0.93810 0.99777 0.99579 1.21187 0.99952 0.95810 0.95865 1.20938 0.92946 0.98969 0.99729 1.19408 0.93454 0.94684 0.95937 1.20633 1.01867 0.93519 0.98130 1.19806 0.76881 0.83778 0.86823 1.90671 1.54219 1.81042 1.17050 1.49955 1.54639 1.17395 1.16114 1.23989 0.96314 0.99099 0.84539 1.20784 0.92376 0.96006 0.93374 1.20774 1.22170 0.95435 1.16722 0.90206 1.25009 0.96079 0.96091 0.95466 1.69889 1.33073 1.27774 1.22098 0.86893 0.80800 0.84366 0.77724 1.20127 1.21216 1.18498 1.23091 0.95230 0.82690 0.99730 0.75988 0.85729 0.85669 0.85727 0.85579 0.88006 0.88214 0.89639 0.92349 0.92207 0.92334 0.92118 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 19.25 29.55 0.57 -1.77 16 2 C -0.15 -2.21 11.79 -38.83 -0.46 -2.67 16 3 C 0.02 0.34 5.72 -107.00 -0.61 -0.27 16 4 C -0.10 -1.19 9.75 -39.20 -0.38 -1.57 16 5 C -0.12 -1.31 10.03 -39.64 -0.40 -1.70 16 6 C -0.11 -1.18 10.04 -39.50 -0.40 -1.58 16 7 C -0.11 -1.35 9.67 -39.64 -0.38 -1.74 16 8 C -0.03 -0.51 4.40 -104.24 -0.46 -0.96 16 9 C -0.10 -1.54 5.18 -29.03 -0.15 -1.69 16 10 C 0.54 10.29 8.07 -10.99 -0.09 10.20 16 11 O -0.55 -12.27 16.81 5.55 0.09 -12.18 16 12 N -0.65 -12.62 3.69 -185.07 -0.68 -13.30 16 13 C 0.08 1.61 7.43 -8.38 -0.06 1.54 16 14 C -0.01 -0.13 2.96 -91.13 -0.27 -0.40 16 15 C -0.51 -13.19 9.38 -34.44 -0.32 -13.51 16 16 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 17 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.89 -25.51 13.96 55.43 0.77 -24.74 16 19 Si 0.88 19.69 27.15 -169.99 -4.62 15.07 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.26 -5.43 5.72 56.52 0.32 -5.11 16 23 C 0.11 2.32 8.17 -8.52 -0.07 2.25 16 24 H 0.22 2.14 7.80 -54.09 -0.42 1.72 16 25 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 26 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 27 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 29 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 30 H 0.10 1.46 7.27 -51.93 -0.38 1.08 16 31 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 32 H 0.06 1.06 7.15 -51.93 -0.37 0.69 16 33 H 0.06 1.31 7.03 -51.93 -0.37 0.94 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.58 8.10 -51.92 -0.42 1.16 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -31.57 319.12 -7.75 -39.32 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.55 Total: 2.95 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.58 Total: -11.93 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.09 Total: -38.04 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.62 Total: 15.07 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.57 -7.75 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855471393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.386 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds