Wall clock time and date at job start Mon Mar 30 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39549 * 120.14154 * 315.27687 * 3 2 1 5 5 C 1.37956 * 119.85246 * 179.74450 * 4 3 2 6 6 C 1.38363 * 120.14292 * 0.28339 * 5 4 3 7 7 C 1.38321 * 120.28648 * 359.97360 * 6 5 4 8 8 C 1.37989 * 120.14293 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.07207 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47254 * 264.99888 * 9 8 7 11 11 O 1.21283 * 119.99645 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00036 * 179.97438 * 10 9 8 13 13 C 1.47066 * 136.06157 * 359.63080 * 12 10 9 14 14 C 1.53754 * 87.89046 * 152.95988 * 13 12 10 15 15 C 1.50703 * 114.26514 * 139.79364 * 14 13 12 16 16 H 1.07998 * 119.99575 * 266.47661 * 15 14 13 17 17 C 1.37880 * 120.00138 * 86.47817 * 15 14 13 18 18 N 1.31512 * 119.99983 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99896 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46914 * 89.99855 * 19 17 15 21 21 H 1.48491 * 109.47291 * 209.99855 * 19 17 15 22 22 H 1.48502 * 109.46921 * 330.00287 * 19 17 15 23 23 C 1.47071 * 136.05602 * 179.97438 * 12 10 9 24 24 H 4.52075 * 14.02059 * 359.97438 * 4 2 1 25 25 H 1.08002 * 120.07578 * 0.03126 * 4 3 2 26 26 H 1.07999 * 119.92639 * 180.25232 * 5 4 3 27 27 H 1.07998 * 119.85538 * 179.97438 * 6 5 4 28 28 H 1.08004 * 119.92332 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.47258 * 24.99795 * 9 8 7 30 30 H 1.09000 * 109.47291 * 144.99888 * 9 8 7 31 31 H 1.08995 * 113.46994 * 267.69498 * 13 12 10 32 32 H 1.09005 * 113.46599 * 38.13585 * 13 12 10 33 33 H 1.09001 * 114.39533 * 272.68065 * 14 13 12 34 34 H 0.96994 * 120.00035 * 179.97438 * 18 17 15 35 35 H 1.08995 * 113.46749 * 321.87406 * 23 12 10 36 36 H 1.09009 * 113.46155 * 92.25311 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3071 -0.8565 0.8492 5 6 4.6866 -0.8547 0.8405 6 6 5.3750 -0.0014 -0.0035 7 6 4.6860 0.8544 -0.8438 8 6 3.3061 0.8624 -0.8448 9 6 2.5571 1.7959 -1.7605 10 6 2.2049 3.0567 -1.0140 11 8 2.5306 3.1849 0.1472 12 7 1.5290 4.0423 -1.6370 13 6 0.9834 4.2644 -2.9845 14 6 -0.0621 5.1936 -2.3463 15 6 -0.3520 6.4395 -3.1431 16 1 0.1850 7.3525 -2.9320 17 6 -1.3026 6.4139 -4.1415 18 7 -1.5558 7.5012 -4.8364 19 14 -2.2307 4.8345 -4.5069 20 1 -3.4605 4.7796 -3.6763 21 1 -2.6023 4.7999 -5.9442 22 1 -1.3673 3.6684 -4.1905 23 6 1.0176 5.3716 -1.2702 24 1 -1.0500 -0.0002 0.0009 25 1 2.7710 -1.5231 1.5084 26 1 5.2304 -1.5205 1.4943 27 1 6.4550 -0.0035 -0.0062 28 1 5.2293 1.5184 -1.4999 29 1 3.1831 2.0440 -2.6177 30 1 1.6439 1.3110 -2.1058 31 1 1.6729 4.7807 -3.6524 32 1 0.5539 3.3681 -3.4321 33 1 -0.9616 4.6866 -1.9970 34 1 -2.2243 7.4831 -5.5390 35 1 0.6175 5.4184 -0.2574 36 1 1.7167 6.1799 -1.4849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855471393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:04 Heat of formation + Delta-G solvation = 61.051973 kcal Electronic energy + Delta-G solvation = -19329.130504 eV Core-core repulsion = 16359.238583 eV Total energy + Delta-G solvation = -2969.891921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.40763 -40.29589 -38.69005 -34.90608 -34.67018 -33.73517 -31.52740 -31.15031 -28.91385 -26.76033 -26.70640 -24.24944 -22.95072 -21.77153 -20.00036 -19.58152 -19.13237 -18.04849 -17.33879 -16.99413 -16.61069 -16.41308 -16.00286 -15.75576 -15.14321 -14.76682 -14.62407 -14.30221 -14.07225 -13.69637 -13.55410 -13.45066 -13.05090 -12.63067 -12.53332 -12.41070 -12.20755 -12.12637 -11.83319 -11.63370 -11.40933 -11.23001 -10.89107 -10.64856 -9.80360 -9.64644 -9.43119 -8.27229 -6.35263 -0.03260 0.37172 1.42677 1.44778 1.55103 1.58498 1.73382 1.94906 2.07250 2.39499 2.97877 3.04359 3.35286 3.58535 3.68704 3.85276 4.02196 4.13266 4.24811 4.30174 4.40840 4.47052 4.53609 4.59966 4.64756 4.70239 4.75082 4.79598 4.90445 5.06660 5.16159 5.36026 5.46010 5.51500 5.55007 5.60282 6.00295 6.28544 6.53905 6.70949 6.84144 7.11408 7.32547 8.88299 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030187 B = 0.004435 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.336842 B = 6312.390958 C = 6729.288046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.185 4.185 3 C -0.006 4.006 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.062 4.062 9 C -0.092 4.092 10 C 0.536 3.464 11 O -0.586 6.586 12 N -0.647 5.647 13 C 0.097 3.903 14 C -0.012 4.012 15 C -0.514 4.514 16 H 0.041 0.959 17 C 0.021 3.979 18 N -0.944 5.944 19 Si 0.939 3.061 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.229 1.229 23 C 0.113 3.887 24 H 0.253 0.747 25 H 0.138 0.862 26 H 0.158 0.842 27 H 0.156 0.844 28 H 0.140 0.860 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.268 0.732 35 H 0.060 0.940 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.736 -19.365 5.859 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C -0.006 4.006 4 C -0.126 4.126 5 C -0.137 4.137 6 C -0.127 4.127 7 C -0.137 4.137 8 C -0.062 4.062 9 C -0.132 4.132 10 C 0.328 3.672 11 O -0.467 6.467 12 N -0.381 5.381 13 C -0.025 4.025 14 C -0.032 4.032 15 C -0.552 4.552 16 H 0.059 0.941 17 C -0.177 4.177 18 N -0.583 5.583 19 Si 0.763 3.237 20 H -0.200 1.200 21 H -0.214 1.214 22 H -0.152 1.152 23 C -0.009 4.009 24 H 0.269 0.731 25 H 0.155 0.845 26 H 0.176 0.824 27 H 0.174 0.826 28 H 0.158 0.842 29 H 0.144 0.856 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.942 -19.398 6.428 22.725 hybrid contribution -0.911 0.254 -0.345 1.007 sum 9.031 -19.144 6.083 22.024 Atomic orbital electron populations 1.25704 0.96641 0.98433 0.97888 1.20526 0.92960 1.02344 1.02700 1.16136 0.86874 0.98821 0.98773 1.21424 0.95281 0.98176 0.97762 1.21454 0.93273 0.99606 0.99331 1.21609 1.01604 0.94736 0.94770 1.21242 0.92423 0.99627 1.00406 1.19525 0.94412 0.95398 0.96868 1.20619 1.02705 0.91359 0.98490 1.20546 0.75724 0.84416 0.86527 1.90647 1.55495 1.81776 1.18774 1.49955 1.54961 1.17076 1.16102 1.23766 0.95210 0.99164 0.84352 1.20705 0.93450 0.95096 0.93949 1.20918 1.21512 0.95771 1.17024 0.94106 1.25867 0.97099 0.99562 0.95209 1.70037 1.34421 1.30490 1.23309 0.85865 0.79640 0.80966 0.77257 1.19985 1.21365 1.15160 1.22990 0.94950 0.83665 0.99320 0.73096 0.84462 0.82400 0.82589 0.84206 0.85552 0.87728 0.89234 0.90110 0.91679 0.92297 0.92179 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 19.25 74.32 1.43 -2.85 16 2 C -0.19 -5.44 11.79 30.02 0.35 -5.09 16 3 C -0.01 -0.17 5.72 -21.41 -0.12 -0.29 16 4 C -0.11 -2.50 9.75 22.52 0.22 -2.28 16 5 C -0.12 -2.17 10.03 22.23 0.22 -1.94 16 6 C -0.11 -2.02 10.04 22.32 0.22 -1.80 16 7 C -0.12 -2.74 9.67 22.23 0.21 -2.52 16 8 C -0.06 -1.72 4.40 -19.62 -0.09 -1.81 16 9 C -0.09 -2.62 5.18 29.10 0.15 -2.47 16 10 C 0.54 19.81 8.07 87.66 0.71 20.52 16 11 O -0.59 -25.83 16.81 -3.04 -0.05 -25.88 16 12 N -0.65 -24.25 3.69 -857.84 -3.16 -27.42 16 13 C 0.10 3.53 7.43 83.26 0.62 4.15 16 14 C -0.01 -0.53 2.96 -11.12 -0.03 -0.56 16 15 C -0.51 -26.80 9.38 25.60 0.24 -26.56 16 16 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 17 C 0.02 1.13 5.47 84.66 0.46 1.60 16 18 N -0.94 -55.27 13.96 21.45 0.30 -54.97 16 19 Si 0.94 39.62 27.15 68.60 1.86 41.48 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.23 -8.38 5.72 99.48 0.57 -7.81 16 23 C 0.11 4.55 8.17 83.17 0.68 5.23 16 24 H 0.25 4.20 7.80 -4.42 -0.03 4.17 16 25 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 26 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 27 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 28 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.13 2.86 8.05 -2.38 -0.02 2.84 16 30 H 0.10 2.84 7.27 -2.39 -0.02 2.82 16 31 H 0.09 3.20 8.10 -2.39 -0.02 3.18 16 32 H 0.08 2.60 7.15 -2.38 -0.02 2.58 16 33 H 0.07 2.72 7.03 -2.39 -0.02 2.70 16 34 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.08 3.13 8.10 -2.38 -0.02 3.11 16 Total: -1.00 -69.82 319.12 5.16 -64.65 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.93 Total: 18.81 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 5.28 Total: -16.68 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.86 Total: -82.39 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.86 Total: 41.48 kcal Total: -69.82 5.16 -64.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855471393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.705 kcal (2) G-P(sol) polarization free energy of solvation -69.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds