Wall clock time and date at job start Mon Mar 30 2020 05:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34949 * 126.02267 * 2 1 4 4 C 1.35311 * 107.76501 * 179.89706 * 3 2 1 5 5 C 1.50697 * 126.04733 * 180.14324 * 4 3 2 6 6 N 1.46897 * 109.47033 * 105.28614 * 5 4 3 7 7 C 1.46910 * 111.00021 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47183 * 185.35700 * 7 6 5 9 9 C 1.50700 * 115.55377 * 65.04477 * 8 7 6 10 10 H 1.07995 * 119.99918 * 265.44767 * 9 8 7 11 11 C 1.37878 * 119.99539 * 85.44894 * 9 8 7 12 12 N 1.31517 * 120.00144 * 353.58994 * 11 9 8 13 13 Si 1.86802 * 119.99842 * 173.59813 * 11 9 8 14 14 H 1.48502 * 109.46978 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47102 * 119.99489 * 13 11 9 16 16 H 1.48503 * 109.47142 * 239.99623 * 13 11 9 17 17 C 1.53005 * 117.49338 * 279.37540 * 8 7 6 18 18 C 1.52999 * 117.49524 * 210.72204 * 8 7 6 19 19 C 1.39968 * 107.90394 * 0.36507 * 4 3 2 20 20 Cl 1.73607 * 125.90867 * 179.79347 * 19 4 3 21 21 N 1.30892 * 108.17943 * 359.77686 * 19 4 3 22 22 H 1.08998 * 109.47660 * 269.71338 * 1 2 3 23 23 H 1.09006 * 109.47516 * 29.71487 * 1 2 3 24 24 H 1.09000 * 109.46755 * 149.71044 * 1 2 3 25 25 H 1.08007 * 126.11837 * 0.02562 * 3 2 1 26 26 H 1.08995 * 109.47255 * 225.28915 * 5 4 3 27 27 H 1.09006 * 109.47081 * 345.29085 * 5 4 3 28 28 H 1.00894 * 111.00624 * 303.95436 * 6 5 4 29 29 H 1.09004 * 109.46930 * 305.35505 * 7 6 5 30 30 H 1.08996 * 109.46762 * 65.35377 * 7 6 5 31 31 H 0.97001 * 119.99666 * 180.02562 * 12 11 9 32 32 H 1.08993 * 117.50100 * 0.02562 * 17 8 7 33 33 H 1.09007 * 117.49215 * 145.02400 * 17 8 7 34 34 H 1.08997 * 117.49731 * 214.97625 * 18 8 7 35 35 H 1.09001 * 117.50021 * 359.96914 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2587 1.0914 0.0000 4 6 3.5436 0.6675 0.0023 5 6 4.7675 1.5468 0.0062 6 7 5.3752 1.5342 1.3435 7 6 6.5735 2.3831 1.3853 8 6 7.2521 2.2406 2.7491 9 6 7.8111 0.8755 3.0576 10 1 7.2199 0.1631 3.6138 11 6 9.0771 0.5363 2.6299 12 7 9.7476 1.3530 1.8468 13 14 9.8401 -1.0836 3.1623 14 1 8.8881 -1.8156 4.0358 15 1 10.1445 -1.9051 1.9633 16 1 11.0944 -0.8174 3.9114 17 6 6.6735 3.0468 3.9137 18 6 8.0111 3.4537 3.2906 19 6 3.5350 -0.7321 -0.0047 20 17 4.9349 -1.7589 -0.0101 21 7 2.2890 -1.1328 -0.0062 22 1 -0.3634 -0.0051 1.0276 23 1 -0.3634 0.8926 -0.5094 24 1 -0.3633 -0.8874 -0.5183 25 1 1.9274 2.1195 0.0004 26 1 5.4860 1.1726 -0.7230 27 1 4.4832 2.5664 -0.2540 28 1 4.7084 1.8157 2.0465 29 1 7.2650 2.0743 0.6013 30 1 6.2875 3.4231 1.2286 31 1 10.6381 1.1141 1.5456 32 1 5.8092 3.6783 3.7083 33 1 6.6975 2.5899 4.9031 34 1 8.9145 3.2645 3.8703 35 1 8.0273 4.3531 2.6750 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856783897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:42 Heat of formation + Delta-G solvation = 103.331307 kcal Electronic energy + Delta-G solvation = -18145.817492 eV Core-core repulsion = 15207.618842 eV Total energy + Delta-G solvation = -2938.198650 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20172 -36.96833 -36.32552 -34.64898 -32.87135 -31.72713 -30.42964 -27.48653 -25.69054 -24.81060 -22.76771 -21.16114 -20.96800 -20.23737 -18.88391 -17.01680 -15.96587 -15.65440 -14.98643 -14.67119 -14.32605 -14.05976 -13.79032 -13.42196 -13.19275 -13.00264 -12.89304 -12.43755 -11.53507 -11.38647 -11.32464 -11.17324 -11.05546 -10.85862 -10.55602 -10.36839 -10.23786 -10.07828 -9.37799 -9.15408 -8.69023 -8.40522 -8.26600 -7.94152 -7.38417 -5.85495 -3.85368 1.73314 1.78088 2.66875 2.98045 3.40483 3.48639 3.54242 4.45019 4.57473 4.72294 4.92662 5.07514 5.16656 5.33598 5.39970 5.45573 5.57731 5.73203 6.00481 6.18777 6.30777 6.36909 6.43389 6.58780 6.73286 6.81760 6.89047 6.99330 7.20105 7.52146 7.55766 7.69533 8.07541 8.09080 8.29693 8.67471 9.13774 9.77266 11.24671 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.005764 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.377831 B = 4856.735052 C = 5774.275472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.371 5.371 3 C 0.060 3.940 4 C -0.206 4.206 5 C 0.136 3.864 6 N -0.660 5.660 7 C 0.109 3.891 8 C 0.054 3.946 9 C -0.462 4.462 10 H 0.059 0.941 11 C 0.068 3.932 12 N -0.887 5.887 13 Si 0.883 3.117 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.287 1.287 17 C -0.216 4.216 18 C -0.159 4.159 19 C 0.147 3.853 20 Cl 0.022 6.978 21 N -0.293 5.293 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.178 0.822 26 H 0.079 0.921 27 H 0.025 0.975 28 H 0.328 0.672 29 H 0.077 0.923 30 H -0.008 1.008 31 H 0.255 0.745 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.510 1.102 -5.547 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.155 5.155 3 C -0.086 4.086 4 C -0.218 4.218 5 C 0.005 3.995 6 N -0.290 5.290 7 C -0.019 4.019 8 C 0.053 3.947 9 C -0.500 4.500 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.525 5.525 13 Si 0.711 3.289 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.214 1.214 17 C -0.254 4.254 18 C -0.197 4.197 19 C -0.045 4.045 20 Cl 0.050 6.950 21 N -0.118 5.118 22 H 0.094 0.906 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.195 0.805 26 H 0.097 0.903 27 H 0.043 0.957 28 H 0.145 0.855 29 H 0.095 0.905 30 H 0.010 0.990 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.781 -0.553 -5.768 17.753 hybrid contribution 0.682 0.682 0.264 1.000 sum -16.099 0.130 -5.504 17.014 Atomic orbital electron populations 1.21854 0.73787 1.04412 1.03484 1.48164 1.06322 1.03259 1.57802 1.22328 0.90154 0.93497 1.02594 1.19994 0.94927 0.92388 1.14526 1.20148 0.91258 0.94290 0.93758 1.60243 1.08067 1.58060 1.02600 1.21538 0.90327 0.89941 1.00143 1.18832 0.95703 0.92163 0.87972 1.20326 0.98712 0.96960 1.34052 0.92258 1.24895 0.97225 0.96317 0.94878 1.70017 1.12248 1.36420 1.33817 0.86677 0.79122 0.84597 0.78474 1.19763 1.21250 1.21374 1.22980 0.96058 1.06483 0.99842 1.22510 0.93998 0.99137 1.04063 1.22631 0.89037 0.91327 1.01518 1.98433 1.33293 1.66645 1.96607 1.77339 1.00255 1.07963 1.26282 0.90641 0.89366 0.89316 0.80502 0.90314 0.95733 0.85498 0.90479 0.98963 0.93512 0.92314 0.90650 0.90151 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.72 11.47 59.85 0.69 1.41 16 2 N -0.37 -4.53 4.01 -68.16 -0.27 -4.80 16 3 C 0.06 0.72 11.39 -17.22 -0.20 0.52 16 4 C -0.21 -3.15 5.62 -105.02 -0.59 -3.74 16 5 C 0.14 2.22 6.02 -4.98 -0.03 2.19 16 6 N -0.66 -12.86 6.37 -115.06 -0.73 -13.59 16 7 C 0.11 2.40 5.51 -3.82 -0.02 2.38 16 8 C 0.05 1.32 1.55 -155.66 -0.24 1.08 16 9 C -0.46 -12.73 8.74 -34.44 -0.30 -13.03 16 10 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 11 C 0.07 1.90 5.39 -17.82 -0.10 1.81 16 12 N -0.89 -25.41 12.92 55.43 0.72 -24.70 16 13 Si 0.88 21.94 29.54 -169.99 -5.02 16.92 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 17 C -0.22 -4.72 9.96 -26.69 -0.27 -4.98 16 18 C -0.16 -3.76 9.41 -26.70 -0.25 -4.01 16 19 C 0.15 2.48 7.84 -17.30 -0.14 2.35 16 20 Cl 0.02 0.40 29.16 -51.86 -1.51 -1.11 16 21 N -0.29 -4.68 12.58 32.95 0.41 -4.26 16 22 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 16 28 H 0.33 6.09 8.78 -39.29 -0.34 5.75 16 29 H 0.08 1.91 8.13 -51.93 -0.42 1.49 16 30 H -0.01 -0.16 8.09 -51.93 -0.42 -0.58 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.65 8.14 -51.92 -0.42 1.23 16 34 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -31.47 321.23 -7.97 -39.43 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.96 Total: 1.29 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.44 Total: -14.03 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.12 Total: -47.35 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -1.51 Total: -1.11 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.47 -7.97 -39.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856783897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.766 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds