Wall clock time and date at job start Mon Mar 30 2020 05:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34949 * 126.02267 * 2 1 4 4 C 1.35311 * 107.76501 * 179.89706 * 3 2 1 5 5 C 1.50697 * 126.04733 * 180.14324 * 4 3 2 6 6 N 1.46897 * 109.47033 * 105.28614 * 5 4 3 7 7 C 1.46910 * 111.00021 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47183 * 185.35700 * 7 6 5 9 9 C 1.50700 * 115.55377 * 65.04477 * 8 7 6 10 10 H 1.07995 * 119.99918 * 265.44767 * 9 8 7 11 11 C 1.37878 * 119.99539 * 85.44894 * 9 8 7 12 12 N 1.31517 * 120.00144 * 353.58994 * 11 9 8 13 13 Si 1.86802 * 119.99842 * 173.59813 * 11 9 8 14 14 H 1.48502 * 109.46978 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47102 * 119.99489 * 13 11 9 16 16 H 1.48503 * 109.47142 * 239.99623 * 13 11 9 17 17 C 1.53005 * 117.49338 * 279.37540 * 8 7 6 18 18 C 1.52999 * 117.49524 * 210.72204 * 8 7 6 19 19 C 1.39968 * 107.90394 * 0.36507 * 4 3 2 20 20 Cl 1.73607 * 125.90867 * 179.79347 * 19 4 3 21 21 N 1.30892 * 108.17943 * 359.77686 * 19 4 3 22 22 H 1.08998 * 109.47660 * 269.71338 * 1 2 3 23 23 H 1.09006 * 109.47516 * 29.71487 * 1 2 3 24 24 H 1.09000 * 109.46755 * 149.71044 * 1 2 3 25 25 H 1.08007 * 126.11837 * 0.02562 * 3 2 1 26 26 H 1.08995 * 109.47255 * 225.28915 * 5 4 3 27 27 H 1.09006 * 109.47081 * 345.29085 * 5 4 3 28 28 H 1.00894 * 111.00624 * 303.95436 * 6 5 4 29 29 H 1.09004 * 109.46930 * 305.35505 * 7 6 5 30 30 H 1.08996 * 109.46762 * 65.35377 * 7 6 5 31 31 H 0.97001 * 119.99666 * 180.02562 * 12 11 9 32 32 H 1.08993 * 117.50100 * 0.02562 * 17 8 7 33 33 H 1.09007 * 117.49215 * 145.02400 * 17 8 7 34 34 H 1.08997 * 117.49731 * 214.97625 * 18 8 7 35 35 H 1.09001 * 117.50021 * 359.96914 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2587 1.0914 0.0000 4 6 3.5436 0.6675 0.0023 5 6 4.7675 1.5468 0.0062 6 7 5.3752 1.5342 1.3435 7 6 6.5735 2.3831 1.3853 8 6 7.2521 2.2406 2.7491 9 6 7.8111 0.8755 3.0576 10 1 7.2199 0.1631 3.6138 11 6 9.0771 0.5363 2.6299 12 7 9.7476 1.3530 1.8468 13 14 9.8401 -1.0836 3.1623 14 1 8.8881 -1.8156 4.0358 15 1 10.1445 -1.9051 1.9633 16 1 11.0944 -0.8174 3.9114 17 6 6.6735 3.0468 3.9137 18 6 8.0111 3.4537 3.2906 19 6 3.5350 -0.7321 -0.0047 20 17 4.9349 -1.7589 -0.0101 21 7 2.2890 -1.1328 -0.0062 22 1 -0.3634 -0.0051 1.0276 23 1 -0.3634 0.8926 -0.5094 24 1 -0.3633 -0.8874 -0.5183 25 1 1.9274 2.1195 0.0004 26 1 5.4860 1.1726 -0.7230 27 1 4.4832 2.5664 -0.2540 28 1 4.7084 1.8157 2.0465 29 1 7.2650 2.0743 0.6013 30 1 6.2875 3.4231 1.2286 31 1 10.6381 1.1141 1.5456 32 1 5.8092 3.6783 3.7083 33 1 6.6975 2.5899 4.9031 34 1 8.9145 3.2645 3.8703 35 1 8.0273 4.3531 2.6750 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856783897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:42 Heat of formation + Delta-G solvation = 82.634566 kcal Electronic energy + Delta-G solvation = -18146.714970 eV Core-core repulsion = 15207.618842 eV Total energy + Delta-G solvation = -2939.096128 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.24057 -38.73143 -37.59868 -36.09240 -33.92385 -33.75717 -31.62932 -28.53293 -27.50191 -26.31188 -24.22863 -22.76859 -22.15646 -21.38085 -20.77429 -18.24899 -17.66117 -16.64066 -16.59827 -16.22149 -15.83791 -15.40700 -15.17833 -14.95720 -14.50777 -14.16024 -13.96403 -13.58435 -13.22217 -13.04062 -12.87857 -12.55233 -12.51248 -12.46257 -12.38515 -12.30365 -11.94961 -11.48065 -11.24948 -10.66731 -10.31747 -10.24167 -9.86955 -9.42148 -8.85664 -7.99005 -6.02478 0.65326 0.76774 1.39944 1.43816 1.51492 1.53525 2.05258 2.50595 3.31787 3.45128 3.65754 3.89980 3.95762 4.26784 4.43851 4.48430 4.52582 4.65167 4.65629 4.74020 4.79688 4.83920 4.91793 5.06185 5.09258 5.19539 5.21920 5.35980 5.71293 5.83881 5.96498 6.04924 6.44797 6.49061 6.61850 6.89985 7.00500 7.61756 9.10285 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.005764 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.377831 B = 4856.735052 C = 5774.275472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.361 5.361 3 C 0.090 3.910 4 C -0.237 4.237 5 C 0.144 3.856 6 N -0.674 5.674 7 C 0.127 3.873 8 C 0.025 3.975 9 C -0.469 4.469 10 H 0.042 0.958 11 C 0.026 3.974 12 N -0.910 5.910 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.287 1.287 16 H -0.282 1.282 17 C -0.187 4.187 18 C -0.165 4.165 19 C 0.124 3.876 20 Cl -0.006 7.006 21 N -0.324 5.324 22 H 0.089 0.911 23 H 0.127 0.873 24 H 0.091 0.909 25 H 0.227 0.773 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.336 0.664 29 H 0.040 0.960 30 H 0.012 0.988 31 H 0.254 0.746 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.251 2.568 -5.488 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.145 5.145 3 C -0.058 4.058 4 C -0.249 4.249 5 C 0.015 3.985 6 N -0.304 5.304 7 C -0.003 4.003 8 C 0.024 3.976 9 C -0.508 4.508 10 H 0.060 0.940 11 C -0.173 4.173 12 N -0.550 5.550 13 Si 0.759 3.241 14 H -0.198 1.198 15 H -0.214 1.214 16 H -0.208 1.208 17 C -0.224 4.224 18 C -0.204 4.204 19 C -0.066 4.066 20 Cl 0.022 6.978 21 N -0.151 5.151 22 H 0.108 0.892 23 H 0.146 0.854 24 H 0.110 0.890 25 H 0.243 0.757 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.551 0.893 -5.703 20.386 hybrid contribution 1.352 0.251 0.252 1.398 sum -18.199 1.143 -5.451 19.032 Atomic orbital electron populations 1.22358 0.70560 1.06569 1.05081 1.48648 1.07951 1.02346 1.55535 1.22947 0.88673 0.95192 0.98961 1.19974 0.95998 0.91432 1.17519 1.20007 0.91185 0.95927 0.91400 1.60092 1.07865 1.57859 1.04622 1.21141 0.90596 0.91225 0.97290 1.18951 0.97345 0.91023 0.90290 1.20507 0.98690 0.98262 1.33312 0.93985 1.25443 0.97839 0.98767 0.95204 1.70098 1.12384 1.37695 1.34808 0.85917 0.78474 0.81748 0.77985 1.19778 1.21362 1.20777 1.22958 0.95971 1.05016 0.98472 1.22423 0.94023 0.99419 1.04497 1.22729 0.88785 0.91845 1.03250 1.98408 1.34986 1.67589 1.96840 1.77253 1.00306 1.10234 1.27305 0.89233 0.85442 0.89049 0.75672 0.92669 0.92883 0.84660 0.94175 0.96995 0.93679 0.88963 0.91066 0.92766 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 11.47 127.77 1.47 2.34 16 2 N -0.36 -7.62 4.01 -369.55 -1.48 -9.10 16 3 C 0.09 1.79 11.39 83.54 0.95 2.74 16 4 C -0.24 -6.82 5.62 -20.12 -0.11 -6.93 16 5 C 0.14 4.53 6.02 85.56 0.51 5.05 16 6 N -0.67 -25.59 6.37 -517.92 -3.30 -28.89 16 7 C 0.13 5.50 5.51 86.30 0.48 5.98 16 8 C 0.02 1.19 1.55 -52.93 -0.08 1.11 16 9 C -0.47 -26.20 8.74 25.60 0.22 -25.98 16 10 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 11 C 0.03 1.48 5.39 84.65 0.46 1.94 16 12 N -0.91 -53.21 12.92 21.45 0.28 -52.94 16 13 Si 0.93 45.87 29.54 68.60 2.03 47.90 16 14 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 16 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 17 C -0.19 -7.77 9.96 30.62 0.30 -7.47 16 18 C -0.17 -7.71 9.41 30.62 0.29 -7.42 16 19 C 0.12 4.18 7.84 85.25 0.67 4.85 16 20 Cl -0.01 -0.22 29.16 -2.72 -0.08 -0.30 16 21 N -0.32 -10.00 12.58 -49.68 -0.62 -10.63 16 22 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.13 0.26 8.14 -2.38 -0.02 0.25 16 24 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.23 2.13 8.06 -2.91 -0.02 2.10 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.36 8.13 -2.38 -0.02 1.34 16 28 H 0.34 11.76 8.78 -89.70 -0.79 10.97 16 29 H 0.04 2.02 8.13 -2.38 -0.02 2.00 16 30 H 0.01 0.47 8.09 -2.39 -0.02 0.45 16 31 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 34 H 0.05 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -70.26 321.23 2.28 -67.98 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.30 Total: 9.78 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 5.15 Total: -23.80 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -5.13 Total: -101.56 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.08 Total: -0.30 kcal Total: -70.26 2.28 -67.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856783897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.614 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds