Wall clock time and date at job start Mon Mar 30 2020 04:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47011 * 2 1 4 4 N 1.46498 * 109.47185 * 119.99647 * 2 1 3 5 5 C 1.34772 * 120.00354 * 275.00208 * 4 2 1 6 6 O 1.21589 * 120.00060 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00317 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00375 * 180.02562 * 7 5 4 9 9 C 1.52992 * 109.47232 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.47100 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00142 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00070 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00008 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00121 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47442 * 90.00284 * 14 12 10 16 16 H 1.48508 * 109.47198 * 210.00202 * 14 12 10 17 17 H 1.48496 * 109.47162 * 330.00248 * 14 12 10 18 18 C 1.50698 * 109.47544 * 240.00238 * 2 1 3 19 19 C 1.35134 * 127.25316 * 99.97219 * 18 2 1 20 20 C 1.37810 * 114.76269 * 180.02562 * 19 18 2 21 21 N 1.30082 * 116.88198 * 0.02562 * 20 19 18 22 22 S 1.69611 * 107.15086 * 359.97438 * 21 20 19 23 23 H 1.09004 * 109.47469 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47336 * 300.00097 * 1 2 3 25 25 H 1.09002 * 109.46997 * 59.99778 * 1 2 3 26 26 H 0.97005 * 120.00123 * 94.99959 * 4 2 1 27 27 H 0.97003 * 119.99815 * 359.97438 * 7 5 4 28 28 H 1.09000 * 109.47051 * 299.99916 * 8 7 5 29 29 H 1.09002 * 109.46900 * 59.99559 * 8 7 5 30 30 H 1.09000 * 109.47310 * 300.00095 * 9 8 7 31 31 H 1.09002 * 109.47262 * 60.00118 * 9 8 7 32 32 H 0.97003 * 119.99993 * 179.97438 * 13 12 10 33 33 H 1.07997 * 122.61766 * 359.97438 * 19 18 2 34 34 H 1.07997 * 121.55937 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1616 2.4116 7 7 2.5958 -0.6536 3.4577 8 6 2.7351 0.0771 4.7198 9 6 3.2584 -0.8694 5.8020 10 6 3.4024 -0.1176 7.1002 11 1 3.1459 0.9303 7.1486 12 6 3.8606 -0.7678 8.2262 13 7 4.1725 -2.0441 8.1674 14 14 4.0384 0.1639 9.8355 15 1 2.7701 0.0736 10.6025 16 1 5.1420 -0.4301 10.6321 17 1 4.3445 1.5889 9.5512 18 6 2.0324 -0.7103 -1.2304 19 6 2.4807 -0.1474 -2.3742 20 6 2.8801 -1.0444 -3.3411 21 7 2.7813 -2.3079 -3.0480 22 16 2.1549 -2.4090 -1.4751 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 2.2490 -1.6317 1.1527 27 1 2.8258 -1.5950 3.4144 28 1 3.4364 0.9009 4.5872 29 1 1.7644 0.4711 5.0206 30 1 2.5569 -1.6930 5.9346 31 1 4.2291 -1.2638 5.5014 32 1 4.4952 -2.5015 8.9596 33 1 2.5220 0.9220 -2.5195 34 1 3.2567 -0.7139 -4.2978 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858358600.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:48 Heat of formation + Delta-G solvation = -2.074763 kcal Electronic energy + Delta-G solvation = -17426.375845 eV Core-core repulsion = 14485.650152 eV Total energy + Delta-G solvation = -2940.725694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93247 -39.01320 -36.13718 -34.68358 -32.93308 -31.88344 -29.99877 -28.97329 -25.65755 -24.72150 -22.78401 -21.04713 -20.84543 -20.15241 -18.38777 -17.86683 -16.40447 -16.21499 -15.51612 -15.29206 -14.64779 -14.53274 -14.23085 -14.03918 -13.53502 -13.44016 -13.37569 -12.74652 -12.32909 -12.21085 -12.03572 -11.27134 -11.19767 -11.03654 -10.79349 -10.63699 -10.33821 -10.03962 -9.88437 -9.57243 -9.27171 -9.21626 -9.05442 -8.50941 -8.30502 -6.09395 -4.12156 0.33612 1.12208 1.54710 2.12710 2.90706 3.29667 3.35920 3.40296 3.48753 4.06214 4.37975 4.56815 4.76360 4.84049 4.99059 5.04647 5.27799 5.36378 5.46977 5.52866 5.68796 6.00336 6.21879 6.25709 6.37751 6.43852 6.75580 6.94634 7.11439 7.55290 7.62471 7.89540 8.23147 8.35540 8.87855 8.94879 9.52687 11.02245 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.040528 B = 0.003116 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.722274 B = 8984.126718 C = 9362.452079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.238 3.762 3 H 0.110 0.890 4 N -0.751 5.751 5 C 0.703 3.297 6 O -0.594 6.594 7 N -0.736 5.736 8 C 0.140 3.860 9 C 0.012 3.988 10 C -0.521 4.521 11 H 0.060 0.940 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.173 4.173 19 C -0.198 4.198 20 C 0.091 3.909 21 N -0.460 5.460 22 S 0.262 5.738 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.393 0.607 27 H 0.394 0.606 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.262 0.738 33 H 0.160 0.840 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.968 0.268 -21.838 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.130 3.870 3 H 0.128 0.872 4 N -0.409 5.409 5 C 0.402 3.598 6 O -0.473 6.473 7 N -0.389 5.389 8 C 0.017 3.983 9 C -0.025 4.025 10 C -0.560 4.560 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.303 4.303 19 C -0.233 4.233 20 C -0.106 4.106 21 N -0.281 5.281 22 S 0.414 5.586 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.227 0.773 27 H 0.227 0.773 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.178 0.822 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.181 -0.978 -21.469 22.107 hybrid contribution 0.520 1.358 0.440 1.519 sum -4.661 0.380 -21.029 21.542 Atomic orbital electron populations 1.22246 0.93453 1.02784 1.03445 1.18975 0.94060 0.96076 0.77844 0.87191 1.45301 1.73229 1.13435 1.08932 1.15975 0.78514 0.85120 0.80142 1.90895 1.57493 1.14289 1.84593 1.45557 1.69488 1.14024 1.09865 1.21621 1.00484 0.95616 0.80551 1.19330 0.96619 0.94626 0.91928 1.21045 1.44354 0.96636 0.93937 0.92206 1.24996 0.95189 0.94926 0.99195 1.69958 1.44595 1.09171 1.29593 0.86508 0.77765 0.80067 0.83193 1.20564 1.21187 1.19713 1.25763 1.03281 1.00854 1.00446 1.21333 1.05569 1.03480 0.92926 1.22869 0.98094 0.88156 1.01491 1.76830 1.21583 1.21548 1.08115 1.84132 1.58014 1.03493 1.12992 0.92147 0.90430 0.91307 0.77290 0.77284 0.92686 0.92664 0.95931 0.95944 0.92850 0.82233 0.79766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.47 37.15 0.35 -1.19 16 2 C 0.24 2.54 3.07 -69.09 -0.21 2.33 16 3 H 0.11 1.29 7.58 -51.93 -0.39 0.90 16 4 N -0.75 -9.29 5.07 -59.82 -0.30 -9.59 16 5 C 0.70 11.80 8.53 -86.92 -0.74 11.05 16 6 O -0.59 -12.07 16.01 5.29 0.08 -11.99 16 7 N -0.74 -12.73 5.56 -65.23 -0.36 -13.09 16 8 C 0.14 2.96 5.61 -4.05 -0.02 2.93 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 10 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 14 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.17 -1.60 5.50 -35.41 -0.19 -1.79 16 19 C -0.20 -1.55 10.17 -40.84 -0.42 -1.97 16 20 C 0.09 0.72 11.27 -18.45 -0.21 0.52 16 21 N -0.46 -4.79 12.09 28.87 0.35 -4.44 16 22 S 0.26 2.48 22.84 -107.50 -2.46 0.03 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.39 4.08 7.82 -40.82 -0.32 3.77 16 27 H 0.39 5.88 8.49 -40.82 -0.35 5.54 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 33 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.19 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 312.04 15.07 4.70 4.70 Total: -1.00 -32.49 312.04 -8.67 -41.16 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.41 Total: 3.34 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.00 Total: -1.10 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.42 Total: -52.42 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.46 Total: 0.03 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.49 -8.67 -41.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858358600.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.084 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds