Wall clock time and date at job start Mon Mar 30 2020 04:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47229 * 2 1 4 4 N 1.46500 * 109.47098 * 240.00287 * 2 1 3 5 5 C 1.34773 * 120.00431 * 85.00044 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.53004 * 109.46928 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46843 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99981 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99570 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00351 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46867 * 90.00067 * 14 12 10 16 16 H 1.48501 * 109.47216 * 209.99924 * 14 12 10 17 17 H 1.48499 * 109.47135 * 330.00265 * 14 12 10 18 18 C 1.50698 * 109.47387 * 119.99899 * 2 1 3 19 19 C 1.35142 * 127.25067 * 260.00396 * 18 2 1 20 20 C 1.37805 * 114.76173 * 180.02562 * 19 18 2 21 21 N 1.30082 * 116.88037 * 359.97438 * 20 19 18 22 22 S 1.69601 * 107.15103 * 359.74153 * 21 20 19 23 23 H 1.09004 * 109.47132 * 59.99646 * 1 2 3 24 24 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47061 * 300.00108 * 1 2 3 26 26 H 0.97000 * 119.99456 * 264.99607 * 4 2 1 27 27 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 28 28 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 29 29 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 30 30 H 1.09007 * 109.46621 * 299.99773 * 9 8 7 31 31 H 1.08997 * 109.46991 * 59.99522 * 9 8 7 32 32 H 0.96996 * 120.00389 * 180.02562 * 13 12 10 33 33 H 1.08006 * 122.61715 * 359.97438 * 19 18 2 34 34 H 1.08002 * 121.55970 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8574 1.1614 -2.4119 7 7 2.6015 -0.6522 -3.4562 8 6 2.7472 0.0801 -4.7167 9 6 3.2773 -0.8647 -5.7971 10 6 3.4278 -0.1112 -7.0935 11 1 3.1705 0.9366 -7.1420 12 6 3.8938 -0.7595 -8.2175 13 7 4.2075 -2.0353 -8.1582 14 14 4.0796 0.1743 -9.8247 15 1 5.4417 0.7607 -9.9018 16 1 3.8760 -0.7560 -10.9641 17 1 3.0688 1.2605 -9.8858 18 6 2.0324 -0.7104 1.2304 19 6 2.4811 -0.1474 2.3741 20 6 2.8814 -1.0444 3.3406 21 7 2.7829 -2.3079 3.0474 22 16 2.1483 -2.4090 1.4778 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.2490 -1.6317 -1.1526 27 1 2.8322 -1.5934 -3.4126 28 1 1.7779 0.4743 -5.0219 29 1 3.4475 0.9040 -4.5794 30 1 4.2468 -1.2584 -5.4915 31 1 2.5773 -1.6888 -5.9344 32 1 4.5357 -2.4913 -8.9489 33 1 2.5235 0.9221 2.5189 34 1 3.2584 -0.7138 4.2972 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858358606.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:51 Heat of formation + Delta-G solvation = -24.988193 kcal Electronic energy + Delta-G solvation = -17427.310398 eV Core-core repulsion = 14485.591103 eV Total energy + Delta-G solvation = -2941.719295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.18450 -39.77803 -37.29611 -36.27944 -34.83443 -33.02645 -31.32438 -30.22289 -26.81657 -26.17928 -23.83413 -22.75557 -22.00675 -21.08550 -19.46161 -18.86974 -18.40990 -17.19912 -16.67716 -16.53484 -16.42949 -15.53013 -15.47547 -15.19457 -14.97158 -14.52664 -14.26332 -14.06103 -13.83557 -13.20213 -13.06206 -12.93027 -12.78131 -12.50974 -12.23249 -12.03662 -11.66958 -11.50587 -11.45452 -11.21790 -10.68442 -10.59084 -10.38030 -9.81636 -9.72673 -8.22682 -6.32860 -0.35260 0.41815 0.87344 1.42869 1.43655 1.47336 1.55223 1.75226 2.12569 2.42379 3.12348 3.26276 3.32674 4.06480 4.18054 4.23457 4.28818 4.48176 4.54632 4.67349 4.79968 4.86730 4.89723 4.93963 5.19914 5.31719 5.39005 5.51847 5.61312 5.62250 5.79248 5.94346 6.18376 6.80652 7.03549 7.36486 7.53843 8.89233 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.040421 B = 0.003117 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.551519 B = 8982.265874 C = 9360.125754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.239 3.761 3 H 0.101 0.899 4 N -0.735 5.735 5 C 0.705 3.295 6 O -0.629 6.629 7 N -0.733 5.733 8 C 0.161 3.839 9 C 0.023 3.977 10 C -0.545 4.545 11 H 0.060 0.940 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.965 3.035 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.265 1.265 18 C -0.181 4.181 19 C -0.188 4.188 20 C 0.098 3.902 21 N -0.489 5.489 22 S 0.245 5.755 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.404 0.596 27 H 0.406 0.594 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.008 0.992 31 H 0.009 0.991 32 H 0.265 0.735 33 H 0.185 0.815 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 0.908 22.915 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.132 3.868 3 H 0.119 0.881 4 N -0.392 5.392 5 C 0.404 3.596 6 O -0.511 6.511 7 N -0.388 5.388 8 C 0.037 3.963 9 C -0.015 4.015 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.192 4.192 13 N -0.567 5.567 14 Si 0.789 3.211 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.190 1.190 18 C -0.312 4.312 19 C -0.223 4.223 20 C -0.100 4.100 21 N -0.309 5.309 22 S 0.398 5.602 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.240 0.760 27 H 0.241 0.759 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.202 0.798 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.298 -0.384 22.590 23.206 hybrid contribution 0.561 1.156 -0.652 1.441 sum -4.737 0.772 21.938 22.457 Atomic orbital electron populations 1.22196 0.92601 1.03226 1.03403 1.19029 0.94714 0.95562 0.77497 0.88095 1.45176 1.72044 1.13890 1.08111 1.16005 0.78094 0.84680 0.80777 1.90872 1.58991 1.15946 1.85245 1.45258 1.69723 1.14498 1.09298 1.21093 0.99352 0.94573 0.81310 1.19136 0.95497 0.94523 0.92309 1.21473 1.44290 0.97030 0.95601 0.92171 1.25868 0.94748 0.95795 1.02793 1.70057 1.45068 1.10668 1.30879 0.85449 0.78831 0.78444 0.78354 1.19810 1.20611 1.18972 1.25579 1.04569 1.00673 1.00383 1.21664 1.03837 1.04795 0.92016 1.23422 0.96657 0.87310 1.02594 1.76869 1.22581 1.22992 1.08477 1.84131 1.58559 1.03921 1.13633 0.92618 0.91458 0.89159 0.75958 0.75860 0.93544 0.93635 0.97390 0.97290 0.92582 0.79792 0.76420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.47 71.98 0.68 -2.12 16 2 C 0.24 4.79 3.07 44.24 0.14 4.93 16 3 H 0.10 2.26 7.58 -2.38 -0.02 2.24 16 4 N -0.73 -17.57 5.07 -461.41 -2.34 -19.91 16 5 C 0.70 23.44 8.53 179.06 1.53 24.97 16 6 O -0.63 -25.60 16.01 -4.01 -0.06 -25.66 16 7 N -0.73 -25.33 5.56 -478.52 -2.66 -27.99 16 8 C 0.16 6.88 5.61 86.38 0.48 7.36 16 9 C 0.02 1.15 5.09 29.85 0.15 1.30 16 10 C -0.55 -30.33 9.11 25.60 0.23 -30.09 16 11 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 12 C 0.01 0.37 5.46 84.65 0.46 0.83 16 13 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 14 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 C -0.18 -3.02 5.50 24.97 0.14 -2.89 16 19 C -0.19 -2.43 10.17 21.45 0.22 -2.21 16 20 C 0.10 1.27 11.27 84.85 0.96 2.23 16 21 N -0.49 -9.33 12.09 -62.60 -0.76 -10.08 16 22 S 0.25 4.37 22.85 -56.49 -1.29 3.08 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.40 8.01 7.83 -92.71 -0.73 7.28 16 27 H 0.41 12.03 8.49 -92.71 -0.79 11.24 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 33 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.22 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -69.38 312.06 -0.20 -69.58 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -0.39 Total: 15.16 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 4.99 Total: 4.31 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -5.47 Total: -111.96 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.29 Total: 3.08 kcal Total: -69.38 -0.20 -69.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858358606.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.589 kcal (2) G-P(sol) polarization free energy of solvation -69.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds