Wall clock time and date at job start Mon Mar 30 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48498 * 109.46892 * 240.00003 * 3 2 1 5 5 H 1.48502 * 109.46815 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47097 * 119.99882 * 3 2 1 7 7 C 1.37876 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99846 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46769 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99952 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99969 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00477 * 179.97438 * 11 10 9 14 14 S 1.81395 * 109.47522 * 180.02562 * 13 11 10 15 15 C 1.81403 * 103.00138 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47272 * 179.97438 * 15 14 13 17 17 H 1.08992 * 110.81340 * 51.66210 * 16 15 14 18 18 C 1.54888 * 110.75200 * 288.32517 * 16 15 14 19 19 C 1.54266 * 104.19449 * 203.74155 * 18 16 15 20 20 H 1.09003 * 117.06675 * 163.21310 * 19 18 16 21 21 C 1.55472 * 118.30148 * 320.02864 * 19 18 16 22 22 C 1.53000 * 59.84143 * 93.29278 * 21 19 18 23 23 H 1.09002 * 119.30055 * 111.71184 * 22 21 19 24 24 C 1.54264 * 118.19605 * 265.85193 * 22 21 19 25 25 H 0.96993 * 120.00461 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.47350 * 59.99903 * 9 7 2 27 27 H 1.09002 * 109.46949 * 299.99209 * 9 7 2 28 28 H 0.97006 * 120.00107 * 0.02562 * 10 9 7 29 29 H 1.09006 * 109.47114 * 59.99668 * 13 11 10 30 30 H 1.09004 * 109.46980 * 300.00671 * 13 11 10 31 31 H 1.08998 * 109.47011 * 59.99574 * 15 14 13 32 32 H 1.09000 * 109.46936 * 299.99907 * 15 14 13 33 33 H 1.08990 * 110.49225 * 322.42032 * 18 16 15 34 34 H 1.09006 * 110.48713 * 84.93786 * 18 16 15 35 35 H 1.08999 * 117.28680 * 345.81037 * 21 19 18 36 36 H 1.09001 * 117.95232 * 200.47464 * 21 19 18 37 37 H 1.09008 * 110.48367 * 160.45666 * 24 22 21 38 38 H 1.08998 * 110.48991 * 283.10281 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0025 12 8 0.5614 -5.1050 0.0017 13 6 2.7331 -6.0288 0.0032 14 16 1.8262 -7.5997 0.0033 15 6 3.1528 -8.8369 0.0050 16 6 2.5421 -10.2397 0.0059 17 1 1.8084 -10.3432 -0.7934 18 6 1.9049 -10.5599 1.3808 19 6 1.9023 -12.1012 1.4468 20 1 1.7614 -12.5554 2.4276 21 6 1.5493 -12.8936 0.1566 22 6 3.0093 -12.5839 0.4932 23 1 3.6781 -13.3996 0.7678 24 6 3.6459 -11.3191 -0.1190 25 1 -0.4850 0.8399 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 3.1568 -3.4354 0.0028 29 1 3.3598 -5.9705 0.8932 30 1 3.3599 -5.9715 -0.8868 31 1 3.7684 -8.7084 0.8953 32 1 3.7696 -8.7094 -0.8846 33 1 2.5090 -10.1447 2.1874 34 1 0.8872 -10.1724 1.4292 35 1 1.0933 -12.3373 -0.6625 36 1 1.2163 -13.9257 0.2659 37 1 4.5314 -11.0263 0.4454 38 1 3.8981 -11.4874 -1.1660 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863354695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:17 Heat of formation + Delta-G solvation = -28.229388 kcal Electronic energy + Delta-G solvation = -17317.615432 eV Core-core repulsion = 14479.295933 eV Total energy + Delta-G solvation = -2838.319500 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.86246 -38.72981 -34.23861 -33.34513 -32.39774 -30.01285 -28.50918 -27.26168 -26.71120 -22.90806 -22.49633 -19.97121 -19.93034 -19.52879 -17.33235 -16.46296 -16.06460 -15.81330 -15.49286 -15.13776 -14.92836 -14.19567 -13.84774 -13.66144 -13.32178 -13.10224 -12.91568 -12.70883 -12.32857 -11.97913 -11.60147 -11.58336 -11.39995 -11.11763 -10.97333 -10.88493 -10.83641 -10.33442 -10.30175 -9.83234 -9.73770 -9.44105 -9.20810 -8.76409 -7.95986 -7.50334 -6.18379 -4.25970 1.56629 2.64960 3.23853 3.25500 3.28806 3.30317 3.39449 4.02842 4.15067 4.32343 4.35009 4.46109 4.68659 4.80549 5.02718 5.16590 5.18466 5.19124 5.20580 5.26224 5.32157 5.36195 5.47146 5.50191 5.60449 5.66851 5.67830 5.86943 5.95940 6.02943 6.11670 7.25854 7.35933 7.48597 7.61744 7.93993 8.54108 8.73052 9.01241 9.40395 10.91755 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.068845 B = 0.002663 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.614280 B =10511.288883 C =10737.700302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.708 5.708 11 C 0.513 3.487 12 O -0.535 6.535 13 C -0.127 4.127 14 S -0.179 6.179 15 C -0.101 4.101 16 C -0.079 4.079 17 H 0.087 0.913 18 C -0.090 4.090 19 C -0.167 4.167 20 H 0.110 0.890 21 C -0.156 4.156 22 C -0.169 4.169 23 H 0.107 0.893 24 C -0.087 4.087 25 H 0.267 0.733 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.391 0.609 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.532 -22.719 0.837 24.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.357 5.357 11 C 0.296 3.704 12 O -0.413 6.413 13 C -0.279 4.279 14 S 0.047 5.953 15 C -0.250 4.250 16 C -0.099 4.099 17 H 0.105 0.895 18 C -0.127 4.127 19 C -0.186 4.186 20 H 0.128 0.872 21 C -0.193 4.193 22 C -0.187 4.187 23 H 0.125 0.875 24 C -0.126 4.126 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.224 0.776 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.400 -22.831 0.843 24.015 hybrid contribution 2.402 1.259 0.041 2.713 sum 9.802 -21.571 0.885 23.711 Atomic orbital electron populations 1.69961 1.06112 1.27498 1.48607 1.24956 0.94931 0.99466 0.94647 0.86457 0.79406 0.82260 0.78683 1.20060 1.21027 1.20052 1.21171 0.93221 0.90400 1.53581 0.91927 1.19144 0.88226 0.81696 0.97914 1.46393 1.11257 1.05655 1.72397 1.19548 0.88778 0.83790 0.78305 1.90711 1.16222 1.84288 1.50070 1.23590 1.01991 0.95923 1.06368 1.87535 1.12334 0.97429 1.97984 1.23510 1.00161 0.96629 1.04674 1.21851 0.97632 0.91348 0.99020 0.89484 1.22007 1.01798 0.92435 0.96491 1.23549 1.04999 0.95210 0.94795 0.87246 1.23294 0.96991 1.00425 0.98546 1.23134 0.91449 0.99602 1.04499 0.87475 1.21973 0.97504 0.92202 1.00883 0.92319 0.95371 0.95378 0.77627 0.87851 0.87866 0.90208 0.90198 0.90623 0.90567 0.88772 0.88405 0.90750 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.55 -14.75 9.28 -34.44 -0.32 -15.07 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.66 5.43 -5.19 -0.03 6.64 16 10 N -0.71 -14.84 5.55 -61.47 -0.34 -15.19 16 11 C 0.51 10.37 7.85 -10.99 -0.09 10.28 16 12 O -0.53 -13.23 15.87 5.55 0.09 -13.14 16 13 C -0.13 -1.82 6.42 36.01 0.23 -1.59 16 14 S -0.18 -2.61 20.60 -107.50 -2.21 -4.83 16 15 C -0.10 -0.99 5.42 37.16 0.20 -0.79 16 16 C -0.08 -0.72 2.40 -88.63 -0.21 -0.93 16 17 H 0.09 0.87 7.39 -51.93 -0.38 0.49 16 18 C -0.09 -0.85 5.93 -25.07 -0.15 -0.99 16 19 C -0.17 -1.39 7.16 -88.18 -0.63 -2.02 16 20 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.16 -1.20 9.96 -25.42 -0.25 -1.45 16 22 C -0.17 -1.27 6.97 -89.50 -0.62 -1.90 16 23 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 24 C -0.09 -0.65 6.21 -25.07 -0.16 -0.81 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 29 H 0.10 1.23 8.14 -51.92 -0.42 0.81 16 30 H 0.10 1.23 8.14 -51.92 -0.42 0.81 16 31 H 0.08 0.71 7.99 -51.93 -0.41 0.30 16 32 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.08 0.70 7.93 -51.93 -0.41 0.28 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.76 7.23 -51.93 -0.38 0.39 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.52 8.05 -51.92 -0.42 0.10 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 328.87 15.07 4.96 4.96 Total: -1.00 -32.00 328.87 -10.02 -42.03 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.10 Total: 2.75 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.12 Total: -6.97 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.40 Total: -40.55 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.21 Total: -4.83 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.00 -10.02 -42.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863354695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.800 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds