Wall clock time and date at job start Mon Mar 30 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48498 * 109.46892 * 240.00003 * 3 2 1 5 5 H 1.48502 * 109.46815 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47097 * 119.99882 * 3 2 1 7 7 C 1.37876 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99846 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46769 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99952 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99969 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00477 * 179.97438 * 11 10 9 14 14 S 1.81395 * 109.47522 * 180.02562 * 13 11 10 15 15 C 1.81403 * 103.00138 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47272 * 179.97438 * 15 14 13 17 17 H 1.08992 * 110.81340 * 51.66210 * 16 15 14 18 18 C 1.54888 * 110.75200 * 288.32517 * 16 15 14 19 19 C 1.54266 * 104.19449 * 203.74155 * 18 16 15 20 20 H 1.09003 * 117.06675 * 163.21310 * 19 18 16 21 21 C 1.55472 * 118.30148 * 320.02864 * 19 18 16 22 22 C 1.53000 * 59.84143 * 93.29278 * 21 19 18 23 23 H 1.09002 * 119.30055 * 111.71184 * 22 21 19 24 24 C 1.54264 * 118.19605 * 265.85193 * 22 21 19 25 25 H 0.96993 * 120.00461 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.47350 * 59.99903 * 9 7 2 27 27 H 1.09002 * 109.46949 * 299.99209 * 9 7 2 28 28 H 0.97006 * 120.00107 * 0.02562 * 10 9 7 29 29 H 1.09006 * 109.47114 * 59.99668 * 13 11 10 30 30 H 1.09004 * 109.46980 * 300.00671 * 13 11 10 31 31 H 1.08998 * 109.47011 * 59.99574 * 15 14 13 32 32 H 1.09000 * 109.46936 * 299.99907 * 15 14 13 33 33 H 1.08990 * 110.49225 * 322.42032 * 18 16 15 34 34 H 1.09006 * 110.48713 * 84.93786 * 18 16 15 35 35 H 1.08999 * 117.28680 * 345.81037 * 21 19 18 36 36 H 1.09001 * 117.95232 * 200.47464 * 21 19 18 37 37 H 1.09008 * 110.48367 * 160.45666 * 24 22 21 38 38 H 1.08998 * 110.48991 * 283.10281 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0025 12 8 0.5614 -5.1050 0.0017 13 6 2.7331 -6.0288 0.0032 14 16 1.8262 -7.5997 0.0033 15 6 3.1528 -8.8369 0.0050 16 6 2.5421 -10.2397 0.0059 17 1 1.8084 -10.3432 -0.7934 18 6 1.9049 -10.5599 1.3808 19 6 1.9023 -12.1012 1.4468 20 1 1.7614 -12.5554 2.4276 21 6 1.5493 -12.8936 0.1566 22 6 3.0093 -12.5839 0.4932 23 1 3.6781 -13.3996 0.7678 24 6 3.6459 -11.3191 -0.1190 25 1 -0.4850 0.8399 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 3.1568 -3.4354 0.0028 29 1 3.3598 -5.9705 0.8932 30 1 3.3599 -5.9715 -0.8868 31 1 3.7684 -8.7084 0.8953 32 1 3.7696 -8.7094 -0.8846 33 1 2.5090 -10.1447 2.1874 34 1 0.8872 -10.1724 1.4292 35 1 1.0933 -12.3373 -0.6625 36 1 1.2163 -13.9257 0.2659 37 1 4.5314 -11.0263 0.4454 38 1 3.8981 -11.4874 -1.1660 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863354695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:16 Heat of formation + Delta-G solvation = -48.028329 kcal Electronic energy + Delta-G solvation = -17318.473979 eV Core-core repulsion = 14479.295933 eV Total energy + Delta-G solvation = -2839.178046 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54473 -40.42662 -36.19624 -34.41527 -34.04195 -31.49254 -29.16045 -28.80428 -27.84393 -24.69248 -23.44167 -21.62041 -20.59467 -20.26570 -19.06262 -17.74353 -17.50732 -16.96353 -16.76931 -16.64328 -16.24234 -15.79825 -14.82542 -14.67211 -14.45419 -14.36441 -14.01818 -13.90052 -13.83742 -13.31807 -13.15658 -12.89268 -12.67830 -12.25419 -12.22286 -12.12178 -11.80804 -11.57234 -11.51346 -10.95457 -10.90487 -10.81001 -10.75345 -10.41963 -9.90735 -8.63919 -8.30041 -6.47352 0.49613 1.43051 1.47231 1.55544 1.64639 1.65987 2.31124 2.55028 2.78784 3.04770 3.50828 3.66476 3.75850 3.87532 4.03399 4.10476 4.19852 4.28326 4.37092 4.49818 4.55862 4.65890 4.70880 4.79592 4.95136 5.05087 5.06224 5.08185 5.20614 5.20951 5.34555 5.36646 5.42590 5.44020 5.64017 5.82017 6.62631 6.80524 7.21161 7.40971 8.82041 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.068845 B = 0.002663 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.614280 B =10511.288883 C =10737.700302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.701 5.701 11 C 0.508 3.492 12 O -0.587 6.587 13 C -0.105 4.105 14 S -0.254 6.254 15 C -0.076 4.076 16 C -0.079 4.079 17 H 0.072 0.928 18 C -0.091 4.091 19 C -0.180 4.180 20 H 0.115 0.885 21 C -0.161 4.161 22 C -0.160 4.160 23 H 0.122 0.878 24 C -0.081 4.081 25 H 0.269 0.731 26 H -0.012 1.012 27 H -0.012 1.012 28 H 0.411 0.589 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.131 -23.365 0.817 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.352 5.352 11 C 0.293 3.707 12 O -0.468 6.468 13 C -0.255 4.255 14 S -0.028 6.028 15 C -0.224 4.224 16 C -0.099 4.099 17 H 0.091 0.909 18 C -0.128 4.128 19 C -0.198 4.198 20 H 0.133 0.867 21 C -0.198 4.198 22 C -0.178 4.178 23 H 0.140 0.860 24 C -0.120 4.120 25 H 0.078 0.922 26 H 0.006 0.994 27 H 0.005 0.995 28 H 0.247 0.753 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.054 -23.505 0.822 25.987 hybrid contribution 1.227 1.342 0.049 1.819 sum 12.281 -22.162 0.871 25.352 Atomic orbital electron populations 1.70135 1.08347 1.28704 1.49816 1.26101 0.95784 1.04023 0.93809 0.85180 0.77875 0.76443 0.79556 1.18565 1.21192 1.18554 1.21584 0.94383 0.90414 1.53111 0.89567 1.18567 0.88665 0.84198 0.94157 1.46086 1.11416 1.05009 1.72667 1.20546 0.89214 0.84651 0.76248 1.90692 1.19094 1.85139 1.51875 1.23407 1.00135 0.92493 1.09500 1.87909 1.16731 0.99877 1.98262 1.23536 0.98101 0.94446 1.06360 1.21836 0.98103 0.91679 0.98258 0.90913 1.21974 1.00527 0.93434 0.96905 1.23567 1.06345 0.94458 0.95431 0.86680 1.23368 0.97595 1.00894 0.97900 1.23240 0.91323 0.99886 1.03391 0.85977 1.21972 0.97059 0.91223 1.01733 0.92212 0.99440 0.99451 0.75253 0.84537 0.84541 0.88466 0.88347 0.90364 0.92953 0.89693 0.87170 0.89389 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.07 29.54 68.60 2.03 44.10 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.56 -30.17 9.28 25.60 0.24 -29.94 16 8 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.75 5.43 85.63 0.46 15.22 16 10 N -0.70 -29.40 5.55 -466.79 -2.59 -31.99 16 11 C 0.51 20.59 7.85 87.66 0.69 21.28 16 12 O -0.59 -30.30 15.87 -3.05 -0.05 -30.35 16 13 C -0.10 -2.77 6.42 71.24 0.46 -2.31 16 14 S -0.25 -7.25 20.60 -56.49 -1.16 -8.42 16 15 C -0.08 -1.30 5.42 71.98 0.39 -0.91 16 16 C -0.08 -1.32 2.40 -9.50 -0.02 -1.34 16 17 H 0.07 1.44 7.39 -2.39 -0.02 1.42 16 18 C -0.09 -1.66 5.93 31.67 0.19 -1.47 16 19 C -0.18 -2.78 7.16 -9.22 -0.07 -2.85 16 20 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 21 C -0.16 -2.29 9.96 31.45 0.31 -1.97 16 22 C -0.16 -2.04 6.97 -10.07 -0.07 -2.11 16 23 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 24 C -0.08 -0.98 6.21 31.67 0.20 -0.79 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 27 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 28 H 0.41 13.73 8.32 -92.70 -0.77 12.96 16 29 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.10 1.37 7.99 -2.39 -0.02 1.35 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.35 7.93 -2.39 -0.02 1.33 16 34 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.08 1.36 7.23 -2.39 -0.02 1.34 16 36 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 0.87 8.05 -2.38 -0.02 0.85 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -73.41 328.87 2.02 -71.39 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.27 Total: 18.11 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 3.24 Total: -6.60 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -2.30 Total: -88.24 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.05 Total: -30.35 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: -7.25 SS G_CDS: -1.16 Total: -8.42 kcal Total: -73.41 2.02 -71.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863354695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.362 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds