Wall clock time and date at job start Mon Mar 30 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 115.55162 * 2 1 4 4 C 1.53005 * 117.50209 * 214.29407 * 2 1 3 5 5 C 1.52999 * 117.49959 * 145.67135 * 2 1 3 6 6 H 1.09000 * 117.50380 * 215.00422 * 5 2 1 7 7 C 1.52996 * 117.49961 * 0.02562 * 5 2 1 8 8 H 1.09008 * 115.56055 * 34.29519 * 7 5 2 9 9 C 1.53000 * 117.49997 * 248.61006 * 7 5 2 10 10 C 1.53002 * 60.02940 * 252.49592 * 9 7 5 11 11 H 1.09000 * 117.49996 * 107.50493 * 10 9 7 12 12 C 1.53002 * 117.49773 * 252.51785 * 10 9 7 13 13 N 1.46499 * 109.47488 * 243.61004 * 12 10 9 14 14 C 1.34776 * 120.00024 * 179.97438 * 13 12 10 15 15 O 1.21275 * 120.00175 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99765 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.46937 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99706 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00279 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99968 * 179.97438 * 18 17 16 21 21 N 1.31639 * 119.99960 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00206 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47147 * 60.00012 * 22 20 18 24 24 H 1.48501 * 109.47209 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47081 * 299.99657 * 22 20 18 26 26 H 1.08998 * 109.47232 * 274.32739 * 1 2 3 27 27 H 1.09005 * 109.47452 * 34.32819 * 1 2 3 28 28 H 1.09004 * 109.47596 * 154.32563 * 1 2 3 29 29 H 1.08993 * 117.50086 * 145.01630 * 4 2 1 30 30 H 1.09002 * 117.49347 * 0.02562 * 4 2 1 31 31 H 1.09002 * 117.49833 * 359.97438 * 9 7 5 32 32 H 1.09002 * 117.49953 * 144.99738 * 9 7 5 33 33 H 1.09007 * 109.46749 * 3.61344 * 12 10 9 34 34 H 1.08996 * 109.47128 * 123.60825 * 12 10 9 35 35 H 0.97005 * 119.99872 * 0.02562 * 13 12 10 36 36 H 1.09005 * 109.46786 * 299.99729 * 16 14 13 37 37 H 1.08996 * 109.47445 * 59.99691 * 16 14 13 38 38 H 0.96995 * 120.00252 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1713 -0.8747 1.2689 7 6 1.3588 -2.1560 1.4716 8 1 0.4238 -2.4020 0.9681 9 6 1.3585 -2.1561 3.0016 10 6 2.0652 -3.2775 2.2374 11 1 3.1552 -3.2777 2.2381 12 6 1.4048 -4.6576 2.2375 13 7 2.2801 -5.6179 2.9142 14 6 1.9015 -6.9057 3.0354 15 8 0.8365 -7.2697 2.5838 16 6 2.8017 -7.8933 3.7320 17 16 2.0204 -9.5260 3.7320 18 6 3.2529 -10.4549 4.5821 19 1 4.1561 -9.9700 4.9219 20 6 3.0631 -11.8100 4.8152 21 7 1.9620 -12.4010 4.4015 22 14 4.3699 -12.7949 5.7158 23 1 4.5746 -12.2231 7.0709 24 1 3.9292 -14.2079 5.8367 25 1 5.6447 -12.7368 4.9562 26 1 -0.3633 0.0775 1.0247 27 1 -0.3634 0.8487 -0.5795 28 1 -0.3634 -0.9262 -0.4452 29 1 3.1715 -0.8755 -1.2680 30 1 1.6112 -1.8586 -1.2681 31 1 1.9839 -1.4188 3.5050 32 1 0.4233 -2.4017 3.5047 33 1 0.4505 -4.6037 2.7616 34 1 1.2372 -4.9803 1.2100 35 1 3.1319 -5.3266 3.2757 36 1 3.7560 -7.9475 3.2079 37 1 2.9693 -7.5703 4.7594 38 1 1.8291 -13.3479 4.5647 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924036246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:24 Heat of formation + Delta-G solvation = -4.389809 kcal Electronic energy + Delta-G solvation = -17190.480071 eV Core-core repulsion = 14353.194333 eV Total energy + Delta-G solvation = -2837.285738 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.57113 -38.79273 -36.48448 -33.79806 -32.41199 -29.74223 -28.83092 -26.45129 -25.40456 -23.78700 -21.76108 -21.09895 -20.33951 -19.45070 -17.82462 -16.43751 -16.20444 -15.91696 -15.27825 -14.82604 -14.77929 -14.07904 -13.85883 -13.64235 -13.42095 -13.07189 -12.88724 -12.76861 -12.54694 -11.82798 -11.82512 -11.64983 -11.47666 -11.23056 -11.03054 -11.02750 -10.75875 -10.63459 -10.02224 -9.82436 -9.71224 -9.30407 -9.04784 -8.81105 -8.22096 -6.48286 -6.20008 -3.90551 2.97624 3.13062 3.18273 3.24579 3.28972 3.34629 3.72942 3.81830 4.17105 4.22081 4.41948 4.47704 4.68789 4.86164 4.91794 4.96513 5.01471 5.07544 5.14862 5.20981 5.45248 5.48692 5.49743 5.53172 5.58942 5.67859 5.71490 5.76129 5.83390 5.92399 5.95122 5.97854 6.05996 6.16457 6.66911 7.60698 7.75469 8.36554 8.64982 9.25001 10.87386 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.055657 B = 0.002628 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.959271 B =10651.798978 C =10799.583613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.151 4.151 3 H 0.102 0.898 4 C -0.174 4.174 5 C -0.120 4.120 6 H 0.103 0.897 7 C -0.111 4.111 8 H 0.108 0.892 9 C -0.168 4.168 10 C -0.158 4.158 11 H 0.110 0.890 12 C 0.153 3.847 13 N -0.736 5.736 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 24.709 -6.037 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.169 4.169 3 H 0.120 0.880 4 C -0.211 4.211 5 C -0.138 4.138 6 H 0.121 0.879 7 C -0.129 4.129 8 H 0.126 0.874 9 C -0.205 4.205 10 C -0.177 4.177 11 H 0.128 0.872 12 C 0.029 3.971 13 N -0.391 5.391 14 C 0.317 3.683 15 O -0.394 6.394 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.394 23.921 -6.811 24.874 hybrid contribution 2.601 -0.027 1.271 2.895 sum 2.206 23.893 -5.540 24.626 Atomic orbital electron populations 1.21348 0.92757 1.01846 1.01985 1.22357 0.95612 0.94221 1.04729 0.88005 1.23121 1.02601 1.01447 0.93892 1.21805 0.99842 0.98585 0.93579 0.87913 1.21793 0.99948 0.97503 0.93696 0.87371 1.23162 1.02678 1.00983 0.93648 1.22557 0.99391 0.90120 1.05618 0.87201 1.20793 0.93083 0.85448 0.97811 1.45980 1.23166 1.08886 1.61051 1.20310 0.87006 0.81942 0.79057 1.90698 1.23302 1.78105 1.47260 1.23528 1.02342 1.01930 1.02558 1.85394 1.27444 0.94738 1.75841 1.22831 1.06243 0.96503 1.42816 0.90980 1.24999 0.96274 0.96727 0.95632 1.70013 1.24914 1.11542 1.43851 0.86217 0.80847 0.78560 0.79821 1.19951 1.20824 1.19945 0.91983 0.92408 0.92421 0.88871 0.88551 0.88656 0.88377 0.91534 0.91340 0.76788 0.89232 0.89223 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.04 37.15 0.34 -0.45 16 2 C -0.15 -1.02 6.41 -90.62 -0.58 -1.61 16 3 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.17 -1.24 9.90 -26.73 -0.26 -1.51 16 5 C -0.12 -0.88 5.85 -90.62 -0.53 -1.41 16 6 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 7 C -0.11 -0.89 4.90 -90.59 -0.44 -1.34 16 8 H 0.11 0.90 7.19 -51.92 -0.37 0.53 16 9 C -0.17 -1.33 9.89 -26.73 -0.26 -1.59 16 10 C -0.16 -1.40 5.57 -90.58 -0.50 -1.91 16 11 H 0.11 0.90 8.04 -51.93 -0.42 0.48 16 12 C 0.15 1.84 5.96 -4.04 -0.02 1.82 16 13 N -0.74 -10.11 5.56 -60.29 -0.33 -10.44 16 14 C 0.53 10.13 7.85 -10.98 -0.09 10.05 16 15 O -0.52 -12.07 15.86 5.56 0.09 -11.98 16 16 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 22 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.38 7.40 -51.93 -0.38 0.00 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.79 8.03 -51.93 -0.42 0.38 16 33 H 0.07 0.86 7.88 -51.93 -0.41 0.45 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 4.27 8.40 -40.82 -0.34 3.93 16 36 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 37 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -33.71 336.98 -9.72 -43.43 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.11 Total: 0.86 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -1.94 Total: -13.94 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.40 Total: -36.07 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.71 -9.72 -43.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924036246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.043 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds