Wall clock time and date at job start Mon Mar 30 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 115.55162 * 2 1 4 4 C 1.53005 * 117.50209 * 214.29407 * 2 1 3 5 5 C 1.52999 * 117.49959 * 145.67135 * 2 1 3 6 6 H 1.09000 * 117.50380 * 215.00422 * 5 2 1 7 7 C 1.52996 * 117.49961 * 0.02562 * 5 2 1 8 8 H 1.09008 * 115.56055 * 34.29519 * 7 5 2 9 9 C 1.53000 * 117.49997 * 248.61006 * 7 5 2 10 10 C 1.53002 * 60.02940 * 252.49592 * 9 7 5 11 11 H 1.09000 * 117.49996 * 107.50493 * 10 9 7 12 12 C 1.53002 * 117.49773 * 252.51785 * 10 9 7 13 13 N 1.46499 * 109.47488 * 243.61004 * 12 10 9 14 14 C 1.34776 * 120.00024 * 179.97438 * 13 12 10 15 15 O 1.21275 * 120.00175 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99765 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.46937 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99706 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00279 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99968 * 179.97438 * 18 17 16 21 21 N 1.31639 * 119.99960 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00206 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47147 * 60.00012 * 22 20 18 24 24 H 1.48501 * 109.47209 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47081 * 299.99657 * 22 20 18 26 26 H 1.08998 * 109.47232 * 274.32739 * 1 2 3 27 27 H 1.09005 * 109.47452 * 34.32819 * 1 2 3 28 28 H 1.09004 * 109.47596 * 154.32563 * 1 2 3 29 29 H 1.08993 * 117.50086 * 145.01630 * 4 2 1 30 30 H 1.09002 * 117.49347 * 0.02562 * 4 2 1 31 31 H 1.09002 * 117.49833 * 359.97438 * 9 7 5 32 32 H 1.09002 * 117.49953 * 144.99738 * 9 7 5 33 33 H 1.09007 * 109.46749 * 3.61344 * 12 10 9 34 34 H 1.08996 * 109.47128 * 123.60825 * 12 10 9 35 35 H 0.97005 * 119.99872 * 0.02562 * 13 12 10 36 36 H 1.09005 * 109.46786 * 299.99729 * 16 14 13 37 37 H 1.08996 * 109.47445 * 59.99691 * 16 14 13 38 38 H 0.96995 * 120.00252 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1713 -0.8747 1.2689 7 6 1.3588 -2.1560 1.4716 8 1 0.4238 -2.4020 0.9681 9 6 1.3585 -2.1561 3.0016 10 6 2.0652 -3.2775 2.2374 11 1 3.1552 -3.2777 2.2381 12 6 1.4048 -4.6576 2.2375 13 7 2.2801 -5.6179 2.9142 14 6 1.9015 -6.9057 3.0354 15 8 0.8365 -7.2697 2.5838 16 6 2.8017 -7.8933 3.7320 17 16 2.0204 -9.5260 3.7320 18 6 3.2529 -10.4549 4.5821 19 1 4.1561 -9.9700 4.9219 20 6 3.0631 -11.8100 4.8152 21 7 1.9620 -12.4010 4.4015 22 14 4.3699 -12.7949 5.7158 23 1 4.5746 -12.2231 7.0709 24 1 3.9292 -14.2079 5.8367 25 1 5.6447 -12.7368 4.9562 26 1 -0.3633 0.0775 1.0247 27 1 -0.3634 0.8487 -0.5795 28 1 -0.3634 -0.9262 -0.4452 29 1 3.1715 -0.8755 -1.2680 30 1 1.6112 -1.8586 -1.2681 31 1 1.9839 -1.4188 3.5050 32 1 0.4233 -2.4017 3.5047 33 1 0.4505 -4.6037 2.7616 34 1 1.2372 -4.9803 1.2100 35 1 3.1319 -5.3266 3.2757 36 1 3.7560 -7.9475 3.2079 37 1 2.9693 -7.5703 4.7594 38 1 1.8291 -13.3479 4.5647 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924036246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:24 Heat of formation + Delta-G solvation = -25.172548 kcal Electronic energy + Delta-G solvation = -17191.381279 eV Core-core repulsion = 14353.194333 eV Total energy + Delta-G solvation = -2838.186945 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72891 -39.74793 -37.26392 -35.04253 -34.57796 -31.26534 -29.36735 -27.87197 -27.30390 -24.40573 -22.35763 -22.04750 -21.57389 -20.11054 -19.79043 -17.82747 -17.39174 -16.87554 -16.66751 -16.62890 -16.00701 -15.49884 -14.98504 -14.69035 -14.45817 -14.39975 -13.93243 -13.73233 -13.33125 -13.29595 -13.16880 -12.85914 -12.65057 -12.41974 -12.35545 -12.08643 -11.82226 -11.74364 -11.32784 -11.12530 -11.02912 -10.64085 -10.28750 -10.22933 -10.03544 -8.67058 -8.34183 -6.12723 1.26853 1.44533 1.47016 1.56877 1.60392 2.21122 2.28344 2.60560 2.99702 3.17933 3.32304 3.49582 3.80573 3.84653 3.96219 4.11299 4.21038 4.26019 4.30752 4.36501 4.38176 4.50156 4.51168 4.71005 4.73653 4.93024 4.95068 4.98758 4.99488 5.18809 5.22498 5.24943 5.39149 5.41832 5.46151 5.48268 6.19988 6.51112 7.06726 7.23999 8.74862 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.055657 B = 0.002628 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.959271 B =10651.798978 C =10799.583613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.148 4.148 3 H 0.112 0.888 4 C -0.180 4.180 5 C -0.123 4.123 6 H 0.111 0.889 7 C -0.107 4.107 8 H 0.101 0.899 9 C -0.160 4.160 10 C -0.159 4.159 11 H 0.125 0.875 12 C 0.153 3.847 13 N -0.709 5.709 14 C 0.532 3.468 15 O -0.569 6.569 16 C -0.128 4.128 17 S -0.154 6.154 18 C -0.547 4.547 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.417 0.583 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 26.477 -5.278 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.166 4.166 3 H 0.130 0.870 4 C -0.217 4.217 5 C -0.142 4.142 6 H 0.129 0.871 7 C -0.126 4.126 8 H 0.119 0.881 9 C -0.196 4.196 10 C -0.177 4.177 11 H 0.142 0.858 12 C 0.030 3.970 13 N -0.363 5.363 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.280 4.280 17 S 0.073 5.927 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.186 1.186 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.254 0.746 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.810 25.750 -6.049 26.513 hybrid contribution 1.895 -0.432 0.982 2.178 sum 3.705 25.318 -5.067 26.084 Atomic orbital electron populations 1.21362 0.92735 1.01903 1.02057 1.22440 0.95699 0.94488 1.04014 0.86998 1.23163 1.02982 1.01628 0.93887 1.21834 1.00115 0.98636 0.93568 0.87079 1.21798 0.99672 0.97101 0.94045 0.88059 1.23218 1.02534 1.00357 0.93538 1.22424 0.99914 0.88315 1.07085 0.85761 1.20858 0.92842 0.86689 0.96649 1.45731 1.23873 1.07173 1.59540 1.20109 0.86096 0.83310 0.78738 1.90687 1.25255 1.79211 1.49563 1.23366 1.02471 0.97660 1.04457 1.85592 1.30211 1.00484 1.76399 1.23175 1.06385 0.97102 1.42772 0.89827 1.26160 0.98755 0.98001 0.96369 1.70184 1.27321 1.11966 1.45351 0.84983 0.77624 0.76579 0.78683 1.18614 1.20426 1.18615 0.92015 0.91603 0.93051 0.88103 0.89301 0.87173 0.88697 0.92479 0.92551 0.74563 0.87113 0.87091 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.04 71.98 0.65 -0.78 16 2 C -0.15 -1.74 6.41 -10.79 -0.07 -1.81 16 3 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 4 C -0.18 -2.31 9.90 30.60 0.30 -2.00 16 5 C -0.12 -1.56 5.85 -10.79 -0.06 -1.63 16 6 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 7 C -0.11 -1.55 4.90 -10.77 -0.05 -1.61 16 8 H 0.10 1.62 7.19 -2.38 -0.02 1.60 16 9 C -0.16 -2.17 9.89 30.60 0.30 -1.87 16 10 C -0.16 -2.49 5.57 -10.77 -0.06 -2.55 16 11 H 0.12 1.64 8.04 -2.39 -0.02 1.62 16 12 C 0.15 3.56 5.96 86.38 0.51 4.07 16 13 N -0.71 -18.27 5.56 -463.06 -2.57 -20.84 16 14 C 0.53 20.01 7.85 87.66 0.69 20.70 16 15 O -0.57 -27.02 15.86 -3.01 -0.05 -27.07 16 16 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 17 S -0.15 -8.65 20.57 -56.49 -1.16 -9.82 16 18 C -0.55 -31.38 9.50 67.96 0.65 -30.73 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.68 5.49 84.86 0.47 1.14 16 21 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 22 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.05 0.65 7.40 -2.39 -0.02 0.63 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.26 8.05 -2.39 -0.02 1.25 16 31 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.38 8.03 -2.39 -0.02 1.36 16 33 H 0.06 1.46 7.88 -2.38 -0.02 1.44 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.42 7.70 8.40 -92.70 -0.78 6.92 16 36 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 37 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 38 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -74.57 336.98 2.56 -72.01 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.26 Total: 17.89 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 3.76 Total: -21.74 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -2.29 Total: -76.98 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.82 kcal Total: -74.57 2.56 -72.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924036246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.842 kcal (2) G-P(sol) polarization free energy of solvation -74.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds