Wall clock time and date at job start Mon Mar 30 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 115.55292 * 2 1 4 4 C 1.53006 * 117.49597 * 214.33538 * 2 1 3 5 5 C 1.52997 * 117.50138 * 145.71434 * 2 1 3 6 6 H 1.09002 * 117.49884 * 214.98139 * 5 2 1 7 7 C 1.53006 * 117.49537 * 359.97438 * 5 2 1 8 8 H 1.09000 * 115.54671 * 85.60233 * 7 5 2 9 9 C 1.53001 * 117.50012 * 231.26563 * 7 5 2 10 10 C 1.52989 * 117.50033 * 299.92941 * 7 5 2 11 11 H 1.09004 * 117.50251 * 0.02562 * 10 7 5 12 12 C 1.53006 * 117.50017 * 144.99988 * 10 7 5 13 13 N 1.46496 * 109.47150 * 185.00175 * 12 10 7 14 14 C 1.34775 * 119.99915 * 179.97438 * 13 12 10 15 15 O 1.21282 * 120.00214 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00344 * 179.97438 * 14 13 12 17 17 S 1.80995 * 109.47369 * 179.97438 * 16 14 13 18 18 C 1.76194 * 99.99909 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00198 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99951 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00137 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47130 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46976 * 119.99531 * 22 20 18 25 25 H 1.48491 * 109.47263 * 239.99829 * 22 20 18 26 26 H 1.09004 * 109.47489 * 154.27815 * 1 2 3 27 27 H 1.09006 * 109.47230 * 274.27603 * 1 2 3 28 28 H 1.09001 * 109.47457 * 34.27664 * 1 2 3 29 29 H 1.08990 * 117.50086 * 359.97438 * 4 2 1 30 30 H 1.09004 * 117.49623 * 145.02417 * 4 2 1 31 31 H 1.08996 * 117.49888 * 214.98064 * 9 7 5 32 32 H 1.08998 * 117.49664 * 0.02562 * 9 7 5 33 33 H 1.09006 * 109.46659 * 304.99731 * 12 10 7 34 34 H 1.08996 * 109.47450 * 64.99874 * 12 10 7 35 35 H 0.97000 * 120.00669 * 359.97438 * 13 12 10 36 36 H 1.08997 * 109.46831 * 299.99865 * 16 14 13 37 37 H 1.08996 * 109.46936 * 59.99541 * 16 14 13 38 38 H 0.97005 * 119.99823 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2363 -1.1207 -0.7655 5 6 2.2364 -1.1213 0.7645 6 1 3.1715 -0.8756 1.2679 7 6 1.3587 -2.1565 1.4710 8 1 1.0270 -2.9913 0.8536 9 6 1.6495 -2.4405 2.9460 10 6 0.3994 -1.6507 2.5501 11 1 0.3931 -0.5804 2.7565 12 6 -0.9524 -2.3555 2.6802 13 7 -1.7717 -1.6604 3.6761 14 6 -3.0117 -2.1064 3.9585 15 8 -3.4496 -3.0830 3.3879 16 6 -3.8544 -1.3917 4.9834 17 16 -5.4541 -2.2245 5.1361 18 6 -6.2110 -1.2106 6.3623 19 1 -5.6743 -0.3683 6.7731 20 6 -7.4967 -1.4952 6.8012 21 7 -8.1507 -2.5221 6.3009 22 14 -8.2989 -0.4207 8.1017 23 1 -7.3614 0.6607 8.4976 24 1 -9.5411 0.1787 7.5513 25 1 -8.6323 -1.2470 9.2897 26 1 -0.3634 -0.9258 -0.4460 27 1 -0.3634 0.0766 1.0249 28 1 -0.3634 0.8492 -0.5788 29 1 1.6111 -1.8582 -1.2687 30 1 3.1715 -0.8747 -1.2687 31 1 1.5085 -3.4620 3.2992 32 1 2.4657 -1.8895 3.4132 33 1 -1.4628 -2.3430 1.7171 34 1 -0.7956 -3.3872 2.9949 35 1 -1.4217 -0.8791 4.1322 36 1 -3.3441 -1.4051 5.9464 37 1 -4.0108 -0.3598 4.6694 38 1 -9.0491 -2.7211 6.6079 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924036248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:28 Heat of formation + Delta-G solvation = -2.375817 kcal Electronic energy + Delta-G solvation = -17520.320999 eV Core-core repulsion = 14683.122594 eV Total energy + Delta-G solvation = -2837.198405 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.68804 -38.80232 -36.26394 -33.79860 -32.41873 -29.81423 -28.82083 -26.35784 -25.40456 -23.78755 -21.68554 -21.17325 -20.40140 -19.34680 -17.81512 -16.30931 -16.20294 -16.02048 -15.28293 -14.80188 -14.73699 -14.26380 -13.86557 -13.76127 -13.27517 -13.08679 -12.84524 -12.55477 -12.49044 -11.82804 -11.75895 -11.64532 -11.42403 -11.06418 -11.00786 -10.95315 -10.76702 -10.73598 -9.94446 -9.81824 -9.75307 -9.32485 -9.06781 -8.81650 -8.21580 -6.48642 -6.20821 -3.91065 2.99689 3.12808 3.22277 3.23338 3.30430 3.37637 3.63991 3.76797 4.21016 4.21590 4.43891 4.56744 4.62939 4.80113 4.95380 5.06074 5.06926 5.14416 5.18331 5.20557 5.48227 5.50295 5.56223 5.60834 5.64273 5.66808 5.76210 5.84283 5.86784 5.91559 5.92218 6.03600 6.13052 6.16158 6.66377 7.60915 7.74820 8.36487 8.64566 9.24642 10.86684 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042112 B = 0.002954 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.740566 B = 9477.122475 C = 9600.657825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.148 4.148 3 H 0.101 0.899 4 C -0.174 4.174 5 C -0.123 4.123 6 H 0.104 0.896 7 C -0.110 4.110 8 H 0.108 0.892 9 C -0.169 4.169 10 C -0.156 4.156 11 H 0.112 0.888 12 C 0.152 3.848 13 N -0.736 5.736 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.714 4.992 -9.791 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.166 4.166 3 H 0.119 0.881 4 C -0.211 4.211 5 C -0.142 4.142 6 H 0.122 0.878 7 C -0.129 4.129 8 H 0.126 0.874 9 C -0.206 4.206 10 C -0.175 4.175 11 H 0.130 0.870 12 C 0.028 3.972 13 N -0.391 5.391 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.807 3.239 -10.755 23.645 hybrid contribution 0.266 2.211 1.698 2.801 sum 21.073 5.450 -9.057 23.576 Atomic orbital electron populations 1.21416 0.92385 1.01893 1.02475 1.22380 0.95837 0.94058 1.04358 0.88120 1.23132 1.02478 1.01864 0.93606 1.21828 0.99821 0.99017 0.93484 0.87786 1.21759 1.00430 0.99709 0.90999 0.87440 1.23227 0.99116 1.01414 0.96821 1.22593 0.90709 0.99729 1.04445 0.87043 1.20810 0.88281 0.95540 0.92566 1.45977 1.15986 1.33391 1.43713 1.20308 0.80900 0.84277 0.82817 1.90701 1.71306 1.26149 1.51191 1.23528 1.03336 1.03799 0.99713 1.85399 1.04734 1.39664 1.53669 1.22909 1.03031 1.16352 1.25963 0.90885 1.25000 0.96142 0.95610 0.96904 1.70031 1.12354 1.26460 1.41463 0.86110 0.79065 0.79823 0.80459 1.19622 1.20576 1.20573 0.92402 0.91524 0.92492 0.88645 0.88976 0.88400 0.88673 0.91354 0.91556 0.76806 0.89230 0.89238 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.98 37.15 0.33 -0.69 16 2 C -0.15 -1.10 6.39 -90.62 -0.58 -1.68 16 3 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.17 -1.22 9.90 -26.73 -0.26 -1.48 16 5 C -0.12 -0.90 5.87 -90.62 -0.53 -1.44 16 6 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 7 C -0.11 -0.88 4.97 -90.62 -0.45 -1.33 16 8 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 9 C -0.17 -1.32 9.90 -26.69 -0.26 -1.59 16 10 C -0.16 -1.35 3.87 -90.58 -0.35 -1.70 16 11 H 0.11 0.91 7.20 -51.93 -0.37 0.54 16 12 C 0.15 1.80 5.96 -4.04 -0.02 1.77 16 13 N -0.74 -9.92 5.56 -60.29 -0.33 -10.25 16 14 C 0.53 10.03 7.85 -10.98 -0.09 9.94 16 15 O -0.52 -11.97 15.86 5.56 0.09 -11.89 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 27 H 0.07 0.58 5.96 -51.93 -0.31 0.27 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.68 8.05 -51.93 -0.42 0.26 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.85 7.88 -51.93 -0.41 0.44 16 35 H 0.40 4.20 8.40 -40.82 -0.34 3.85 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -33.55 333.72 -9.55 -43.09 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.03 Total: 1.13 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.80 Total: -14.11 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.40 Total: -35.82 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.55 -9.55 -43.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924036248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.717 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds