Wall clock time and date at job start Mon Mar 30 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 115.55292 * 2 1 4 4 C 1.53006 * 117.49597 * 214.33538 * 2 1 3 5 5 C 1.52997 * 117.50138 * 145.71434 * 2 1 3 6 6 H 1.09002 * 117.49884 * 214.98139 * 5 2 1 7 7 C 1.53006 * 117.49537 * 359.97438 * 5 2 1 8 8 H 1.09000 * 115.54671 * 85.60233 * 7 5 2 9 9 C 1.53001 * 117.50012 * 231.26563 * 7 5 2 10 10 C 1.52989 * 117.50033 * 299.92941 * 7 5 2 11 11 H 1.09004 * 117.50251 * 0.02562 * 10 7 5 12 12 C 1.53006 * 117.50017 * 144.99988 * 10 7 5 13 13 N 1.46496 * 109.47150 * 185.00175 * 12 10 7 14 14 C 1.34775 * 119.99915 * 179.97438 * 13 12 10 15 15 O 1.21282 * 120.00214 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00344 * 179.97438 * 14 13 12 17 17 S 1.80995 * 109.47369 * 179.97438 * 16 14 13 18 18 C 1.76194 * 99.99909 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00198 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99951 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00137 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47130 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46976 * 119.99531 * 22 20 18 25 25 H 1.48491 * 109.47263 * 239.99829 * 22 20 18 26 26 H 1.09004 * 109.47489 * 154.27815 * 1 2 3 27 27 H 1.09006 * 109.47230 * 274.27603 * 1 2 3 28 28 H 1.09001 * 109.47457 * 34.27664 * 1 2 3 29 29 H 1.08990 * 117.50086 * 359.97438 * 4 2 1 30 30 H 1.09004 * 117.49623 * 145.02417 * 4 2 1 31 31 H 1.08996 * 117.49888 * 214.98064 * 9 7 5 32 32 H 1.08998 * 117.49664 * 0.02562 * 9 7 5 33 33 H 1.09006 * 109.46659 * 304.99731 * 12 10 7 34 34 H 1.08996 * 109.47450 * 64.99874 * 12 10 7 35 35 H 0.97000 * 120.00669 * 359.97438 * 13 12 10 36 36 H 1.08997 * 109.46831 * 299.99865 * 16 14 13 37 37 H 1.08996 * 109.46936 * 59.99541 * 16 14 13 38 38 H 0.97005 * 119.99823 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2363 -1.1207 -0.7655 5 6 2.2364 -1.1213 0.7645 6 1 3.1715 -0.8756 1.2679 7 6 1.3587 -2.1565 1.4710 8 1 1.0270 -2.9913 0.8536 9 6 1.6495 -2.4405 2.9460 10 6 0.3994 -1.6507 2.5501 11 1 0.3931 -0.5804 2.7565 12 6 -0.9524 -2.3555 2.6802 13 7 -1.7717 -1.6604 3.6761 14 6 -3.0117 -2.1064 3.9585 15 8 -3.4496 -3.0830 3.3879 16 6 -3.8544 -1.3917 4.9834 17 16 -5.4541 -2.2245 5.1361 18 6 -6.2110 -1.2106 6.3623 19 1 -5.6743 -0.3683 6.7731 20 6 -7.4967 -1.4952 6.8012 21 7 -8.1507 -2.5221 6.3009 22 14 -8.2989 -0.4207 8.1017 23 1 -7.3614 0.6607 8.4976 24 1 -9.5411 0.1787 7.5513 25 1 -8.6323 -1.2470 9.2897 26 1 -0.3634 -0.9258 -0.4460 27 1 -0.3634 0.0766 1.0249 28 1 -0.3634 0.8492 -0.5788 29 1 1.6111 -1.8582 -1.2687 30 1 3.1715 -0.8747 -1.2687 31 1 1.5085 -3.4620 3.2992 32 1 2.4657 -1.8895 3.4132 33 1 -1.4628 -2.3430 1.7171 34 1 -0.7956 -3.3872 2.9949 35 1 -1.4217 -0.8791 4.1322 36 1 -3.3441 -1.4051 5.9464 37 1 -4.0108 -0.3598 4.6694 38 1 -9.0491 -2.7211 6.6079 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924036248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:27 Heat of formation + Delta-G solvation = -23.172459 kcal Electronic energy + Delta-G solvation = -17521.222809 eV Core-core repulsion = 14683.122594 eV Total energy + Delta-G solvation = -2838.100215 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76728 -39.84787 -37.05817 -35.01863 -34.58085 -31.29195 -29.53421 -27.82806 -27.22152 -24.39996 -22.28952 -22.03927 -21.70105 -20.09029 -19.74726 -17.77842 -17.39363 -16.87983 -16.65994 -16.63153 -15.98081 -15.43772 -15.11420 -14.78520 -14.56727 -14.38158 -13.99263 -13.67673 -13.35469 -13.15841 -13.09454 -12.90730 -12.60605 -12.34582 -12.31707 -12.10597 -11.73765 -11.60223 -11.42219 -11.15710 -10.99392 -10.61064 -10.30902 -10.26384 -10.03801 -8.66794 -8.34644 -6.12737 1.27270 1.41952 1.47484 1.58749 1.61032 2.22229 2.28094 2.69277 2.99615 3.02670 3.32651 3.54458 3.78250 3.90526 3.98462 4.03747 4.18954 4.22451 4.30970 4.38548 4.47263 4.51430 4.59758 4.70443 4.73705 4.94251 4.95842 4.99425 5.00018 5.19332 5.25031 5.29179 5.35444 5.42434 5.46567 5.50501 6.20367 6.51369 7.06767 7.24507 8.74912 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042112 B = 0.002954 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.740566 B = 9477.122475 C = 9600.657825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.151 4.151 3 H 0.110 0.890 4 C -0.174 4.174 5 C -0.123 4.123 6 H 0.115 0.885 7 C -0.108 4.108 8 H 0.101 0.899 9 C -0.161 4.161 10 C -0.155 4.155 11 H 0.124 0.876 12 C 0.154 3.846 13 N -0.709 5.709 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.129 4.129 17 S -0.154 6.154 18 C -0.544 4.544 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.417 0.583 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.646 7.058 -8.985 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.169 4.169 3 H 0.128 0.872 4 C -0.211 4.211 5 C -0.141 4.141 6 H 0.133 0.867 7 C -0.127 4.127 8 H 0.119 0.881 9 C -0.198 4.198 10 C -0.174 4.174 11 H 0.142 0.858 12 C 0.030 3.970 13 N -0.363 5.363 14 C 0.318 3.682 15 O -0.447 6.447 16 C -0.280 4.280 17 S 0.073 5.927 18 C -0.692 4.692 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.254 0.746 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.799 5.340 -9.951 25.443 hybrid contribution -0.215 1.558 1.363 2.081 sum 22.585 6.898 -8.588 25.127 Atomic orbital electron populations 1.21406 0.93259 1.01471 1.02107 1.22401 0.95180 0.94645 1.04711 0.87166 1.23191 1.02861 1.01492 0.93561 1.21862 0.99971 0.98590 0.93639 0.86659 1.21773 1.00024 0.99677 0.91181 0.88113 1.23295 0.98655 1.01261 0.96568 1.22431 0.89111 1.00029 1.05787 0.85849 1.20867 0.89522 0.95379 0.91241 1.45723 1.14108 1.33329 1.43104 1.20093 0.82174 0.83635 0.82292 1.90691 1.72688 1.28332 1.52984 1.23370 0.99314 1.03822 1.01512 1.85593 1.10319 1.42376 1.54368 1.23233 1.03596 1.16472 1.25923 0.89864 1.26152 0.96771 0.97032 0.99339 1.70194 1.12888 1.28526 1.43250 0.84882 0.78002 0.77917 0.76994 1.17973 1.19947 1.19938 0.93422 0.91948 0.92263 0.89183 0.87765 0.88715 0.87098 0.92507 0.92571 0.74616 0.87136 0.87122 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.98 71.98 0.65 -1.28 16 2 C -0.15 -1.95 6.39 -10.79 -0.07 -2.02 16 3 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.17 -2.13 9.90 30.60 0.30 -1.83 16 5 C -0.12 -1.51 5.87 -10.79 -0.06 -1.58 16 6 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 7 C -0.11 -1.53 4.97 -10.79 -0.05 -1.59 16 8 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 9 C -0.16 -2.15 9.90 30.62 0.30 -1.85 16 10 C -0.16 -2.38 3.87 -10.77 -0.04 -2.43 16 11 H 0.12 1.66 7.20 -2.38 -0.02 1.64 16 12 C 0.15 3.50 5.96 86.38 0.51 4.02 16 13 N -0.71 -17.99 5.56 -463.05 -2.57 -20.57 16 14 C 0.53 19.87 7.85 87.66 0.69 20.56 16 15 O -0.57 -26.85 15.86 -3.04 -0.05 -26.90 16 16 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 17 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 18 C -0.54 -31.20 9.50 67.95 0.65 -30.55 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.67 5.49 84.86 0.47 1.13 16 21 N -0.91 -56.34 13.22 21.65 0.29 -56.05 16 22 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H 0.05 0.81 7.90 -2.39 -0.02 0.79 16 27 H 0.06 0.99 5.96 -2.38 -0.01 0.97 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 1.19 8.05 -2.39 -0.02 1.18 16 30 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.09 1.35 8.03 -2.39 -0.02 1.34 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.06 1.43 7.88 -2.39 -0.02 1.41 16 35 H 0.42 7.61 8.40 -92.71 -0.78 6.83 16 36 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 37 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 38 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 Total: -1.00 -74.27 333.72 2.57 -71.69 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.27 Total: 17.97 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 3.78 Total: -22.09 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -2.29 Total: -76.62 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -74.27 2.57 -71.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924036248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.519 kcal (2) G-P(sol) polarization free energy of solvation -74.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds