Wall clock time and date at job start Mon Mar 30 2020 05:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86793 * 120.00293 * 2 1 4 4 H 1.48501 * 109.47222 * 240.00165 * 3 2 1 5 5 H 1.48509 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47436 * 119.99594 * 3 2 1 7 7 C 1.38799 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00025 * 180.02562 * 7 2 1 9 9 S 1.76206 * 120.00061 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99829 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47109 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99776 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00431 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00094 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47057 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47118 * 179.97438 * 15 14 13 17 17 H 1.09002 * 110.43519 * 56.08321 * 16 15 14 18 18 C 1.54889 * 110.48592 * 293.54400 * 16 15 14 19 19 C 1.54891 * 102.74891 * 203.37985 * 18 16 15 20 20 C 1.54266 * 104.31343 * 37.87666 * 19 18 16 21 21 H 1.09000 * 117.41374 * 196.48160 * 20 19 18 22 22 C 1.55782 * 118.11191 * 39.94747 * 20 19 18 23 23 C 1.53003 * 59.86518 * 266.78956 * 22 20 19 24 24 H 1.08996 * 119.29698 * 248.36500 * 23 22 20 25 25 H 0.96999 * 119.99497 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47419 * 60.00375 * 10 9 7 27 27 H 1.09002 * 109.47301 * 300.00166 * 10 9 7 28 28 H 0.97004 * 119.99561 * 359.97438 * 13 11 10 29 29 H 1.08994 * 109.47063 * 59.99610 * 14 13 11 30 30 H 1.08998 * 109.46732 * 299.99403 * 14 13 11 31 31 H 1.09001 * 109.46994 * 59.99442 * 15 14 13 32 32 H 1.09002 * 109.46915 * 299.99835 * 15 14 13 33 33 H 1.08998 * 110.75807 * 85.06488 * 18 16 15 34 34 H 1.08998 * 110.91370 * 321.76573 * 18 16 15 35 35 H 1.09002 * 110.48740 * 156.62163 * 19 18 16 36 36 H 1.08998 * 110.48604 * 279.13048 * 19 18 16 37 37 H 1.08995 * 117.11858 * 159.22272 * 22 20 19 38 38 H 1.09003 * 118.09207 * 13.91601 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0013 11 6 1.9873 -5.3028 0.0018 12 8 0.7910 -5.5023 0.0028 13 7 2.8440 -6.3432 0.0020 14 6 2.3302 -7.7152 0.0018 15 6 3.5022 -8.6987 0.0027 16 6 2.9657 -10.1314 0.0032 17 1 2.2988 -10.2884 -0.8446 18 6 2.2323 -10.4352 1.3332 19 6 2.3112 -11.9795 1.4221 20 6 3.7120 -12.3220 0.8742 21 1 3.8976 -13.3555 0.5816 22 6 4.9013 -11.3968 1.2697 23 6 4.1294 -11.1437 -0.0269 24 1 4.6242 -11.3112 -0.9835 25 1 -0.4849 0.8401 -0.0004 26 1 3.1250 -3.7310 0.8908 27 1 3.1237 -3.7317 -0.8892 28 1 3.8008 -6.1836 0.0015 29 1 1.7218 -7.8751 -0.8883 30 1 1.7215 -7.8752 0.8917 31 1 4.1103 -8.5384 0.8931 32 1 4.1115 -8.5387 -0.8869 33 1 1.1950 -10.1034 1.2869 34 1 2.7468 -9.9730 2.1756 35 1 2.2158 -12.3075 2.4572 36 1 1.5378 -12.4371 0.8051 37 1 5.9047 -11.8136 1.1841 38 1 4.7534 -10.6924 2.0883 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927491001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:19 Heat of formation + Delta-G solvation = -31.656564 kcal Electronic energy + Delta-G solvation = -17476.454006 eV Core-core repulsion = 14637.985893 eV Total energy + Delta-G solvation = -2838.468113 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11150 -39.00173 -35.25263 -32.48269 -32.40677 -30.72517 -29.26224 -26.40143 -25.42740 -23.97816 -22.39267 -20.45951 -19.93543 -19.15608 -17.79367 -16.89569 -16.22176 -15.68600 -15.51197 -14.83914 -14.79090 -14.37247 -14.03195 -13.63627 -13.13845 -13.07027 -12.86991 -12.54269 -12.27822 -11.99934 -11.57922 -11.44614 -11.23077 -11.05718 -11.02943 -11.02423 -10.79515 -10.75137 -10.30071 -9.87221 -9.79447 -9.34023 -9.04907 -8.82465 -8.22015 -6.48277 -6.20070 -3.90586 3.06589 3.14483 3.24523 3.28267 3.30732 3.36355 3.76741 4.08765 4.22068 4.30573 4.50140 4.74292 4.79507 4.88031 5.04119 5.08642 5.14853 5.18355 5.24896 5.32719 5.40795 5.44405 5.53506 5.62041 5.68500 5.70337 5.83377 5.86995 5.90501 5.92803 5.95770 6.05761 6.14517 6.16444 6.67973 7.60638 7.76248 8.36509 8.66153 9.24985 10.87351 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.057730 B = 0.002745 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.901404 B =10198.750313 C =10488.581688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.740 5.740 14 C 0.120 3.880 15 C -0.121 4.121 16 C -0.059 4.059 17 H 0.084 0.916 18 C -0.129 4.129 19 C -0.096 4.096 20 C -0.172 4.172 21 H 0.108 0.892 22 C -0.154 4.154 23 C -0.158 4.158 24 H 0.107 0.893 25 H 0.269 0.731 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.397 0.603 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.310 -22.847 1.276 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.316 3.684 12 O -0.393 6.393 13 N -0.394 5.394 14 C -0.004 4.004 15 C -0.159 4.159 16 C -0.078 4.078 17 H 0.102 0.898 18 C -0.167 4.167 19 C -0.134 4.134 20 C -0.190 4.190 21 H 0.127 0.873 22 C -0.191 4.191 23 C -0.176 4.176 24 H 0.125 0.875 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.231 0.769 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.106 -23.075 1.269 24.490 hybrid contribution 2.523 1.283 -0.090 2.832 sum 10.629 -21.792 1.179 24.274 Atomic orbital electron populations 1.70011 1.05952 1.27547 1.46812 1.24995 0.95035 0.99025 0.94557 0.86221 0.79227 0.81234 0.78788 1.19949 1.20815 1.19944 1.22833 0.94874 0.91689 1.59009 0.90988 1.85393 1.05018 0.96299 1.96717 1.23532 1.06512 0.95484 1.04883 1.20310 0.86555 0.86323 0.75194 1.90698 1.15397 1.85658 1.47580 1.46023 1.09882 1.05659 1.77860 1.21312 0.96213 0.80595 1.02280 1.21749 0.97683 0.93590 1.02829 1.21512 0.95014 0.92761 0.98538 0.89772 1.22646 1.01099 0.95603 0.97302 1.21912 0.94635 0.95878 1.00946 1.23624 0.94624 0.95473 1.05237 0.87349 1.23306 0.95359 1.02009 0.98408 1.23171 1.00499 0.98528 0.95438 0.87512 0.92137 0.89259 0.89260 0.76908 0.91818 0.91641 0.91230 0.91209 0.90751 0.91087 0.91551 0.90945 0.88552 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 11 C 0.53 10.13 7.85 -10.98 -0.09 10.05 16 12 O -0.52 -12.08 15.86 5.55 0.09 -11.99 16 13 N -0.74 -10.10 5.56 -60.29 -0.33 -10.43 16 14 C 0.12 1.42 5.52 -4.04 -0.02 1.39 16 15 C -0.12 -1.01 4.87 -26.73 -0.13 -1.14 16 16 C -0.06 -0.47 2.83 -88.96 -0.25 -0.72 16 17 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.13 -1.03 5.03 -24.74 -0.12 -1.15 16 19 C -0.10 -0.69 6.77 -25.07 -0.17 -0.86 16 20 C -0.17 -1.22 7.19 -87.90 -0.63 -1.85 16 21 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 22 C -0.15 -1.06 9.95 -25.25 -0.25 -1.31 16 23 C -0.16 -1.15 6.33 -89.38 -0.57 -1.72 16 24 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 27 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 28 H 0.40 4.21 8.47 -40.82 -0.35 3.87 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.84 7.38 -51.93 -0.38 0.45 16 31 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.62 8.01 -51.93 -0.42 0.21 16 34 H 0.07 0.58 7.31 -51.93 -0.38 0.20 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.67 7.27 -51.93 -0.38 0.30 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -33.85 327.64 -9.72 -43.56 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.09 Total: 0.28 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -1.81 Total: -13.33 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.40 Total: -36.07 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.85 -9.72 -43.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927491001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.908 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds