Wall clock time and date at job start Mon Mar 30 2020 04:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.46949 * 89.97852 * 6 5 4 8 8 C 1.34772 * 120.00003 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00336 * 359.97438 * 8 7 6 10 10 C 1.50705 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.53001 * 109.46996 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47334 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47155 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00369 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99600 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99600 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00095 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47351 * 90.00506 * 17 15 13 19 19 H 1.48509 * 109.46946 * 210.00052 * 17 15 13 20 20 H 1.48501 * 109.47293 * 329.99754 * 17 15 13 21 21 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 22 22 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 23 23 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 24 24 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 25 25 H 1.09000 * 109.47136 * 209.97649 * 6 5 4 26 26 H 1.09001 * 109.46989 * 329.97993 * 6 5 4 27 27 H 0.96998 * 120.00050 * 359.97438 * 7 6 5 28 28 H 1.09000 * 109.47257 * 299.99814 * 10 8 7 29 29 H 1.08992 * 109.47288 * 60.00147 * 10 8 7 30 30 H 1.09000 * 109.47065 * 300.00053 * 11 10 8 31 31 H 1.09007 * 109.47302 * 59.99718 * 11 10 8 32 32 H 1.09000 * 109.47152 * 300.00079 * 12 11 10 33 33 H 1.09002 * 109.46651 * 59.99825 * 12 11 10 34 34 H 0.97001 * 120.00104 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0177 7 7 5.7809 -1.0141 1.4013 8 6 7.0371 -1.4320 1.6539 9 8 7.7884 -1.6844 0.7360 10 6 7.5081 -1.5856 3.0772 11 6 8.9595 -2.0697 3.0846 12 6 9.4380 -2.2251 4.5296 13 6 10.8677 -2.7013 4.5368 14 1 11.3834 -2.8761 3.6042 15 6 11.5170 -2.9148 5.7342 16 7 12.7647 -3.3309 5.7406 17 14 10.6248 -2.6131 7.3474 18 1 9.9455 -3.8613 7.7783 19 1 11.6038 -2.1990 8.3845 20 1 9.6162 -1.5391 7.1618 21 16 2.5060 -1.3906 0.0078 22 1 -0.3635 -0.0004 -1.0276 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8901 0.5135 25 1 5.3883 -1.8252 -0.4927 26 1 5.9514 -0.1366 -0.4961 27 1 5.1801 -0.8119 2.1355 28 1 7.4427 -0.6245 3.5873 29 1 6.8802 -2.3132 3.5912 30 1 9.0245 -3.0309 2.5746 31 1 9.5878 -1.3424 2.5704 32 1 9.3730 -1.2637 5.0392 33 1 8.8097 -2.9522 5.0441 34 1 13.2214 -3.4815 6.5829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118369793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:29 Heat of formation + Delta-G solvation = -17.622570 kcal Electronic energy + Delta-G solvation = -17024.734075 eV Core-core repulsion = 14083.334178 eV Total energy + Delta-G solvation = -2941.399897 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.47905 -40.79555 -36.62859 -36.01979 -34.18795 -33.95778 -31.37629 -29.99675 -27.78379 -25.87985 -24.88398 -22.17409 -21.46466 -20.93580 -20.44551 -18.95374 -18.07849 -17.50409 -16.88668 -16.64791 -16.30923 -15.87339 -15.48998 -14.88807 -14.64826 -14.53559 -14.39981 -13.92719 -13.86420 -13.78559 -13.32503 -13.16813 -12.69462 -12.47588 -11.78740 -11.72681 -11.58630 -11.47635 -11.31897 -11.31344 -11.19122 -10.73465 -10.73013 -10.65977 -10.28413 -8.26287 -6.31650 -0.75565 -0.20435 0.23798 1.31088 1.39461 1.43117 1.55065 1.59785 2.17173 2.40271 2.79327 3.08890 3.43450 3.71041 3.86253 4.10331 4.17486 4.26791 4.38095 4.46803 4.61479 4.71493 4.78895 4.93592 4.98052 5.06264 5.07214 5.18823 5.58884 5.62528 5.69807 6.32143 6.39423 6.77334 7.15853 7.32620 7.40961 8.91327 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.041353 B = 0.002856 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.937940 B = 9800.438783 C =10151.334828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.016 4.016 3 N -0.304 5.304 4 N -0.273 5.273 5 C -0.058 4.058 6 C 0.205 3.795 7 N -0.717 5.717 8 C 0.522 3.478 9 O -0.578 6.578 10 C -0.130 4.130 11 C -0.082 4.082 12 C -0.010 4.010 13 C -0.539 4.539 14 H 0.020 0.980 15 C -0.005 4.005 16 N -0.957 5.957 17 Si 0.962 3.038 18 H -0.263 1.263 19 H -0.288 1.288 20 H -0.237 1.237 21 S 0.261 5.739 22 H 0.109 0.891 23 H 0.112 0.888 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.415 0.585 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.029 0.971 33 H 0.031 0.969 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.284 4.055 -9.381 33.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.294 4.294 3 N -0.143 5.143 4 N -0.112 5.112 5 C -0.337 4.337 6 C 0.078 3.922 7 N -0.372 5.372 8 C 0.310 3.690 9 O -0.456 6.456 10 C -0.170 4.170 11 C -0.120 4.120 12 C -0.048 4.048 13 C -0.577 4.577 14 H 0.039 0.961 15 C -0.200 4.200 16 N -0.598 5.598 17 Si 0.784 3.216 18 H -0.188 1.188 19 H -0.214 1.214 20 H -0.160 1.160 21 S 0.505 5.495 22 H 0.128 0.872 23 H 0.131 0.869 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.105 0.895 27 H 0.252 0.748 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -31.573 4.185 -9.963 33.371 hybrid contribution 0.509 0.322 0.642 0.880 sum -31.063 4.507 -9.321 32.743 Atomic orbital electron populations 1.20695 0.80981 1.06293 1.05978 1.30065 1.06275 0.92005 1.01032 1.71505 0.96846 1.28509 1.17414 1.71456 1.07483 1.18553 1.13706 1.29030 1.03700 0.93360 1.07631 1.19559 0.85045 1.02464 0.85178 1.45860 1.14072 1.69277 1.08028 1.21134 0.80689 0.74853 0.92331 1.90713 1.55434 1.51286 1.48209 1.21734 0.97544 1.05612 0.92098 1.21059 0.93993 0.99849 0.97100 1.19556 0.93839 0.96951 0.94423 1.21569 0.98558 1.44720 0.92829 0.96131 1.26203 0.95608 0.94129 1.04094 1.70110 1.13247 1.48386 1.28068 0.85495 0.78803 0.80208 0.77102 1.18782 1.21399 1.15965 1.83593 0.94468 1.08830 1.62584 0.87234 0.86917 0.88462 0.87674 0.89507 0.74806 0.86702 0.85933 0.94032 0.94512 0.95308 0.95074 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.48 71.23 0.75 0.43 16 2 C -0.02 -0.21 7.53 88.46 0.67 0.46 16 3 N -0.30 -6.48 11.66 -50.85 -0.59 -7.07 16 4 N -0.27 -6.37 11.66 -50.85 -0.59 -6.96 16 5 C -0.06 -1.02 6.90 88.47 0.61 -0.41 16 6 C 0.20 3.91 6.27 85.64 0.54 4.45 16 7 N -0.72 -14.30 5.55 -466.77 -2.59 -16.89 16 8 C 0.52 14.68 7.83 87.66 0.69 15.36 16 9 O -0.58 -21.83 15.98 -3.04 -0.05 -21.87 16 10 C -0.13 -3.55 5.70 29.85 0.17 -3.38 16 11 C -0.08 -3.32 4.44 30.60 0.14 -3.18 16 12 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 13 C -0.54 -32.23 9.66 25.60 0.25 -31.99 16 14 H 0.02 1.38 7.99 -2.91 -0.02 1.36 16 15 C 0.00 -0.27 5.47 84.65 0.46 0.19 16 16 N -0.96 -61.82 13.96 21.45 0.30 -61.52 16 17 Si 0.96 43.84 27.47 68.60 1.88 45.72 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.24 -9.63 6.54 99.48 0.65 -8.97 16 21 S 0.26 2.71 23.04 -56.49 -1.30 1.41 16 22 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 23 H 0.11 -0.10 8.14 -2.38 -0.02 -0.12 16 24 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.42 6.08 8.46 -92.71 -0.78 5.30 16 28 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.04 1.81 8.10 -2.39 -0.02 1.80 16 31 H 0.04 1.64 8.10 -2.38 -0.02 1.62 16 32 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 33 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 34 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -82.21 311.12 1.72 -80.49 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 0.28 Total: 5.12 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 4.38 Total: -18.43 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -3.48 Total: -92.44 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.30 Total: 1.41 kcal Total: -82.21 1.72 -80.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118369793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.867 kcal (2) G-P(sol) polarization free energy of solvation -82.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds