Wall clock time and date at job start Mon Mar 30 2020 04:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47326 * 119.99835 * 2 1 3 5 5 N 1.46501 * 109.47661 * 175.00148 * 4 2 1 6 6 C 1.46501 * 119.99584 * 269.72829 * 5 4 2 7 7 C 1.34772 * 120.00265 * 89.99752 * 5 4 2 8 8 O 1.21580 * 119.99951 * 356.61328 * 7 5 4 9 9 C 1.47689 * 120.00201 * 176.61743 * 7 5 4 10 10 C 1.39483 * 122.10367 * 186.51123 * 9 7 5 11 11 C 1.35003 * 111.68399 * 179.77995 * 10 9 7 12 12 S 1.71763 * 105.44910 * 0.43335 * 11 10 9 13 13 N 1.30606 * 122.10110 * 6.79188 * 9 7 5 14 14 N 1.46501 * 109.47278 * 239.99502 * 2 1 3 15 15 C 1.36937 * 119.99506 * 85.00281 * 14 2 1 16 16 H 1.08000 * 120.00431 * 359.97438 * 15 14 2 17 17 C 1.38821 * 119.99883 * 180.02562 * 15 14 2 18 18 N 1.31620 * 119.99702 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99741 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47306 * 90.00121 * 19 17 15 21 21 H 1.48507 * 109.47077 * 210.00044 * 19 17 15 22 22 H 1.48506 * 109.47453 * 329.99779 * 19 17 15 23 23 H 1.09004 * 109.46965 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47194 * 300.00032 * 1 2 3 25 25 H 1.08999 * 109.46828 * 60.00193 * 1 2 3 26 26 H 1.08995 * 109.47169 * 54.99635 * 4 2 1 27 27 H 1.09006 * 109.46974 * 294.99917 * 4 2 1 28 28 H 1.08999 * 109.47366 * 95.95615 * 6 5 4 29 29 H 1.09002 * 109.46543 * 215.95294 * 6 5 4 30 30 H 1.08998 * 109.47324 * 335.94872 * 6 5 4 31 31 H 1.08000 * 124.15973 * 359.97438 * 10 9 7 32 32 H 1.07998 * 127.27670 * 180.16953 * 11 10 9 33 33 H 0.96996 * 120.00515 * 265.00196 * 14 2 1 34 34 H 0.97002 * 119.99397 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1907 6 6 4.1258 -1.9948 0.5667 7 6 4.2676 0.1492 1.7156 8 8 3.7497 1.1451 2.1826 9 6 5.7378 0.0085 1.7236 10 6 6.5666 0.9242 2.3718 11 6 7.8692 0.5912 2.2499 12 16 7.8880 -0.8467 1.3106 13 7 6.3438 -0.9782 1.1196 14 7 2.0184 -0.6907 -1.1961 15 6 2.1492 -0.0076 -2.3757 16 1 1.8920 1.0402 -2.4243 17 6 2.6114 -0.6621 -3.5092 18 7 2.7367 -0.0056 -4.6431 19 14 3.0556 -2.4745 -3.4253 20 1 1.8583 -3.2929 -3.7441 21 1 4.1307 -2.7667 -4.4072 22 1 3.5313 -2.8048 -2.0577 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6054 -1.7197 1.2952 27 1 1.7517 -0.1582 2.1370 28 1 4.3759 -1.7635 -0.4688 29 1 5.0341 -2.2543 1.1105 30 1 3.4331 -2.8359 0.5940 31 1 6.2099 1.7910 2.9082 32 1 8.7200 1.1199 2.6536 33 1 2.2490 -1.6318 -1.1526 34 1 3.0600 -0.4629 -5.4351 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001774118720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:06 Heat of formation + Delta-G solvation = 18.522674 kcal Electronic energy + Delta-G solvation = -18882.642418 eV Core-core repulsion = 15942.809896 eV Total energy + Delta-G solvation = -2939.832522 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.66845 -39.54274 -37.98730 -35.98868 -34.08850 -32.53468 -31.39182 -28.55476 -28.08224 -26.18650 -25.21203 -22.59816 -21.67516 -20.53727 -19.70508 -19.45371 -18.22839 -17.24489 -16.96255 -16.66000 -15.83732 -15.64352 -15.31490 -14.84933 -14.64016 -14.25777 -14.23188 -13.98834 -13.81755 -13.64722 -13.30302 -12.87491 -12.78017 -12.45831 -12.27237 -12.19331 -11.86892 -11.72654 -11.67299 -11.04262 -10.89086 -10.77076 -9.88858 -9.61713 -9.24407 -8.02179 -5.34947 -0.41942 0.56184 0.75433 0.83407 1.34079 1.40148 1.47094 1.99518 2.16774 2.48475 3.29306 3.47253 3.59602 3.82852 4.05075 4.19114 4.35143 4.42166 4.55573 4.59586 4.65738 4.73973 4.80902 4.85881 4.98130 5.08625 5.19116 5.26243 5.40820 5.63914 5.75701 6.19455 6.28277 6.99766 7.07907 7.81986 8.05165 9.20023 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.007138 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.779270 B = 3921.628677 C = 4814.026920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.021 0.979 4 C 0.112 3.888 5 N -0.584 5.584 6 C 0.078 3.922 7 C 0.576 3.424 8 O -0.569 6.569 9 C 0.028 3.972 10 C -0.156 4.156 11 C -0.257 4.257 12 S 0.506 5.494 13 N -0.540 5.540 14 N -0.740 5.740 15 C -0.223 4.223 16 H 0.042 0.958 17 C -0.068 4.068 18 N -0.989 5.989 19 Si 0.952 3.048 20 H -0.279 1.279 21 H -0.300 1.300 22 H -0.233 1.233 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.031 0.969 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.038 0.962 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.171 0.829 32 H 0.225 0.775 33 H 0.367 0.633 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.086 -6.303 18.390 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.046 3.954 3 H 0.039 0.961 4 C -0.010 4.010 5 N -0.313 5.313 6 C -0.066 4.066 7 C 0.361 3.639 8 O -0.449 6.449 9 C -0.145 4.145 10 C -0.188 4.188 11 C -0.406 4.406 12 S 0.662 5.338 13 N -0.376 5.376 14 N -0.385 5.385 15 C -0.354 4.354 16 H 0.060 0.940 17 C -0.259 4.259 18 N -0.640 5.640 19 Si 0.778 3.222 20 H -0.206 1.206 21 H -0.227 1.227 22 H -0.157 1.157 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.051 0.949 26 H 0.126 0.874 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.188 0.812 32 H 0.242 0.758 33 H 0.201 0.799 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.450 -7.336 17.436 22.112 hybrid contribution -0.840 1.051 -0.069 1.347 sum 10.609 -6.285 17.368 21.300 Atomic orbital electron populations 1.22180 0.95906 1.02154 1.00936 1.20773 0.93774 0.94804 0.86030 0.96088 1.22005 0.78215 1.02850 0.97979 1.47609 1.06982 1.21290 1.55440 1.22448 0.99782 0.86338 0.98051 1.17749 0.85435 0.82660 0.78035 1.90728 1.74291 1.30108 1.49789 1.21091 0.95888 0.94620 1.02854 1.21448 0.92395 1.01815 1.03153 1.27572 1.01337 1.05581 1.06121 1.80361 1.00969 1.15993 1.36526 1.72653 1.11439 1.27414 1.26129 1.42593 1.79990 1.09413 1.06472 1.18927 1.35040 0.93943 0.87512 0.93952 1.25530 1.02338 1.03045 0.94939 1.69916 1.54984 1.37885 1.01231 0.85510 0.77622 0.80154 0.78886 1.20553 1.22720 1.15735 0.91576 0.90890 0.94948 0.87427 0.88610 0.94367 0.87106 0.89951 0.81201 0.75827 0.79878 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.49 71.98 0.68 -4.57 16 2 C 0.16 6.27 3.20 44.99 0.14 6.42 16 3 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 4 C 0.11 3.60 5.04 86.38 0.44 4.04 16 5 N -0.58 -20.16 2.73 -850.37 -2.32 -22.48 16 6 C 0.08 2.44 8.00 127.77 1.02 3.46 16 7 C 0.58 21.26 7.66 86.74 0.66 21.93 16 8 O -0.57 -23.60 16.28 -3.97 -0.06 -23.67 16 9 C 0.03 0.85 6.50 42.12 0.27 1.12 16 10 C -0.16 -3.79 9.98 21.83 0.22 -3.57 16 11 C -0.26 -4.11 11.41 67.08 0.77 -3.34 16 12 S 0.51 8.96 23.20 -56.49 -1.31 7.65 16 13 N -0.54 -14.98 7.30 -75.31 -0.55 -15.53 16 14 N -0.74 -35.07 4.29 -322.93 -1.39 -36.46 16 15 C -0.22 -13.22 10.41 84.04 0.87 -12.34 16 16 H 0.04 2.84 8.06 -2.91 -0.02 2.81 16 17 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 18 N -0.99 -65.47 13.97 21.65 0.30 -65.17 16 19 Si 0.95 45.41 27.73 68.60 1.90 47.31 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 22 H -0.23 -9.56 5.24 99.48 0.52 -9.04 16 23 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 24 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.11 2.75 7.85 -2.39 -0.02 2.73 16 27 H 0.10 2.90 7.47 -2.38 -0.02 2.88 16 28 H 0.04 1.46 6.60 -2.39 -0.02 1.44 16 29 H 0.11 3.14 5.23 -2.39 -0.01 3.13 16 30 H 0.08 2.16 7.82 -2.39 -0.02 2.14 16 31 H 0.17 3.99 8.00 -2.91 -0.02 3.97 16 32 H 0.23 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.37 16.13 4.27 -92.71 -0.40 15.73 16 34 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -78.68 296.32 2.66 -76.02 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.54 Total: 22.82 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 5.55 Total: 9.50 kcal Atomic # 7 Polarization: -135.69 SS G_CDS: -3.95 Total: -139.64 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.06 Total: -23.67 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 16 Polarization: 8.96 SS G_CDS: -1.31 Total: 7.65 kcal Total: -78.68 2.66 -76.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001774118720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.547 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds