Wall clock time and date at job start Mon Mar 30 2020 04:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34144 * 118.70255 * 2 1 4 4 O 1.21225 * 119.36279 * 359.42858 * 3 2 1 5 5 C 1.50584 * 121.27491 * 179.45513 * 3 2 1 6 6 C 1.53243 * 109.16594 * 29.08919 * 5 3 2 7 7 C 1.53235 * 108.56821 * 304.38625 * 6 5 3 8 8 H 1.09004 * 109.52523 * 295.64358 * 7 6 5 9 9 N 1.46901 * 109.52297 * 175.51571 * 7 6 5 10 10 C 1.46905 * 110.99870 * 155.12570 * 9 7 6 11 11 C 1.50697 * 109.47066 * 180.02562 * 10 9 7 12 12 O 1.21297 * 120.00124 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00196 * 180.02562 * 11 10 9 14 14 C 1.37100 * 120.00290 * 180.02562 * 13 11 10 15 15 H 1.07990 * 119.99768 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99812 * 180.02562 * 14 13 11 17 17 N 1.31408 * 119.99864 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99403 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47490 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46718 * 120.00461 * 18 16 14 21 21 H 1.48503 * 109.46960 * 239.99492 * 18 16 14 22 22 C 1.34207 * 118.68825 * 179.97438 * 2 1 3 23 23 O 1.21228 * 119.40912 * 0.55879 * 22 2 1 24 24 H 1.08994 * 109.47278 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46981 * 120.00794 * 1 2 3 26 26 H 1.09009 * 109.47017 * 240.00111 * 1 2 3 27 27 H 1.09002 * 109.52456 * 269.18193 * 5 3 2 28 28 H 1.09002 * 109.57324 * 149.03127 * 5 3 2 29 29 H 1.09002 * 109.62109 * 184.65636 * 6 5 3 30 30 H 1.09001 * 109.76969 * 64.20253 * 6 5 3 31 31 H 1.00901 * 111.00067 * 279.07745 * 9 7 6 32 32 H 1.09001 * 109.46798 * 300.00327 * 10 9 7 33 33 H 1.08998 * 109.46961 * 60.00043 * 10 9 7 34 34 H 0.97009 * 119.99629 * 359.97438 * 13 11 10 35 35 H 0.97004 * 119.99642 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1092 1.1766 0.0000 4 8 1.4681 2.2054 -0.0105 5 6 3.6135 1.2442 0.0122 6 6 4.1787 0.0000 -0.6811 7 6 3.6136 -1.2441 0.0124 8 1 3.9692 -1.2803 1.0422 9 7 4.0567 -2.4485 -0.7025 10 6 4.0646 -3.6166 0.1884 11 6 4.5240 -4.8300 -0.5781 12 8 4.8166 -4.7314 -1.7511 13 7 4.6097 -6.0247 0.0396 14 6 5.0282 -7.1285 -0.6576 15 1 5.2887 -7.0407 -1.7019 16 6 5.1161 -8.3604 -0.0207 17 7 4.7986 -8.4672 1.2500 18 14 5.6855 -9.8644 -0.9710 19 1 5.9812 -9.4805 -2.3746 20 1 6.9124 -10.4135 -0.3395 21 1 4.6164 -10.8949 -0.9537 22 6 2.1092 -1.1773 0.0005 23 8 1.4686 -2.2065 -0.0093 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 -0.3633 -0.5139 0.8901 27 1 3.9682 1.2799 1.0423 28 1 3.9432 2.1379 -0.5176 29 1 5.2660 0.0001 -0.6040 30 1 3.8864 -0.0017 -1.7312 31 1 3.4837 -2.6178 -1.5156 32 1 4.7444 -3.4341 1.0207 33 1 3.0587 -3.7879 0.5718 34 1 4.3761 -6.1035 0.9779 35 1 4.8596 -9.3273 1.6944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090028621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:04 Heat of formation + Delta-G solvation = -98.759172 kcal Electronic energy + Delta-G solvation = -20468.383838 eV Core-core repulsion = 17080.712723 eV Total energy + Delta-G solvation = -3387.671115 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.88747 -39.26969 -38.18058 -36.30232 -35.47348 -33.98270 -33.04512 -31.20972 -28.51509 -27.82973 -25.79834 -23.96599 -23.36464 -22.68089 -19.51429 -18.72673 -17.85669 -17.79108 -17.36445 -16.77505 -15.97681 -15.58795 -15.09944 -14.87869 -14.52834 -14.36040 -14.11241 -13.87468 -13.43089 -13.22254 -12.94096 -12.70591 -12.56228 -12.24492 -11.86446 -11.71431 -11.49991 -11.37051 -11.06356 -10.58228 -10.44116 -10.33615 -10.21849 -9.95238 -9.51659 -8.61045 -8.22334 -7.96042 -6.41094 -3.81837 1.28185 2.31325 2.52683 3.17139 3.27662 3.34958 3.64863 3.85696 3.91889 4.21962 4.32770 4.39394 4.74695 4.83858 4.94442 5.06253 5.14129 5.14802 5.22430 5.27633 5.33606 5.50179 5.61493 5.74332 5.82712 5.99561 6.23473 6.68179 6.90967 7.17875 7.33033 7.54119 7.56208 8.06436 8.61171 9.18225 9.54495 10.05402 10.76723 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044534 B = 0.003623 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.580814 B = 7726.322432 C = 8015.664184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.569 5.569 3 C 0.523 3.477 4 O -0.510 6.510 5 C -0.141 4.141 6 C -0.112 4.112 7 C 0.069 3.931 8 H 0.122 0.878 9 N -0.634 5.634 10 C 0.041 3.959 11 C 0.444 3.556 12 O -0.585 6.585 13 N -0.562 5.562 14 C -0.299 4.299 15 H 0.104 0.896 16 C 0.022 3.978 17 N -0.901 5.901 18 Si 0.930 3.070 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.486 3.514 23 O -0.487 6.487 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.358 0.642 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.393 0.607 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 17.923 2.002 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.313 5.313 3 C 0.314 3.686 4 O -0.383 6.383 5 C -0.181 4.181 6 C -0.150 4.150 7 C -0.045 4.045 8 H 0.139 0.861 9 N -0.265 5.265 10 C -0.091 4.091 11 C 0.229 3.771 12 O -0.470 6.470 13 N -0.198 5.198 14 C -0.428 4.428 15 H 0.122 0.878 16 C -0.180 4.180 17 N -0.542 5.542 18 Si 0.757 3.243 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.208 1.208 22 C 0.273 3.727 23 O -0.358 6.358 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.179 0.821 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.226 0.774 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.472 17.883 1.390 18.270 hybrid contribution -1.017 -1.111 0.387 1.556 sum -4.489 16.772 1.777 17.453 Atomic orbital electron populations 1.21945 0.78054 1.04698 1.03639 1.46714 1.10028 1.08004 1.66533 1.21126 0.91684 0.82369 0.73465 1.90718 1.68832 1.33160 1.45632 1.21968 0.89294 1.01741 1.05066 1.21737 1.03387 0.89615 1.00242 1.22045 0.86350 0.94343 1.01780 0.86057 1.60467 1.56090 1.01365 1.08581 1.21875 1.01339 0.90198 0.95707 1.19681 0.85031 0.84137 0.88256 1.90524 1.54683 1.85181 1.16564 1.41841 1.58475 1.06658 1.12864 1.19759 1.40906 0.85550 0.96622 0.87829 1.25269 0.97559 0.99246 0.95880 1.69624 1.48637 1.26240 1.09749 0.85795 0.78135 0.80692 0.79687 1.19199 1.20743 1.20773 1.22736 0.93063 0.82534 0.74340 1.90785 1.68542 1.32779 1.43692 0.88553 0.90699 0.90725 0.86948 0.86524 0.87610 0.90109 0.82141 0.89365 0.91881 0.77420 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 9.81 59.85 0.59 1.18 16 2 N -0.57 -6.20 2.93 -123.15 -0.36 -6.56 16 3 C 0.52 5.21 7.48 -11.32 -0.08 5.12 16 4 O -0.51 -6.46 16.19 5.60 0.09 -6.37 16 5 C -0.14 -0.88 6.07 -27.81 -0.17 -1.05 16 6 C -0.11 -0.85 5.70 -26.48 -0.15 -1.00 16 7 C 0.07 0.74 2.72 -68.80 -0.19 0.55 16 8 H 0.12 1.06 7.80 -51.93 -0.41 0.66 16 9 N -0.63 -9.59 5.74 -109.14 -0.63 -10.22 16 10 C 0.04 0.72 5.83 -4.97 -0.03 0.69 16 11 C 0.44 10.49 7.82 -10.99 -0.09 10.41 16 12 O -0.59 -15.83 15.78 5.54 0.09 -15.74 16 13 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 14 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 15 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 18 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.49 6.00 7.08 -11.29 -0.08 5.92 16 23 O -0.49 -7.82 14.81 5.60 0.08 -7.74 16 24 H 0.10 0.92 6.73 -51.93 -0.35 0.57 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 27 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.36 6.01 8.02 -39.29 -0.32 5.69 16 32 H 0.09 1.34 8.06 -51.93 -0.42 0.92 16 33 H 0.06 1.11 6.71 -51.93 -0.35 0.76 16 34 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 301.88 15.07 4.55 4.55 Total: -1.00 -34.22 301.88 -5.18 -39.40 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.21 Total: 11.11 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: -0.44 Total: 13.78 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.32 Total: -55.08 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: 0.26 Total: -29.84 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.22 -5.18 -39.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090028621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.355 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds