Wall clock time and date at job start Mon Mar 30 2020 04:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34144 * 118.70255 * 2 1 4 4 O 1.21225 * 119.36279 * 359.42858 * 3 2 1 5 5 C 1.50584 * 121.27491 * 179.45513 * 3 2 1 6 6 C 1.53243 * 109.16594 * 29.08919 * 5 3 2 7 7 C 1.53235 * 108.56821 * 304.38625 * 6 5 3 8 8 H 1.09004 * 109.52523 * 295.64358 * 7 6 5 9 9 N 1.46901 * 109.52297 * 175.51571 * 7 6 5 10 10 C 1.46905 * 110.99870 * 155.12570 * 9 7 6 11 11 C 1.50697 * 109.47066 * 180.02562 * 10 9 7 12 12 O 1.21297 * 120.00124 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00196 * 180.02562 * 11 10 9 14 14 C 1.37100 * 120.00290 * 180.02562 * 13 11 10 15 15 H 1.07990 * 119.99768 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99812 * 180.02562 * 14 13 11 17 17 N 1.31408 * 119.99864 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99403 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47490 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46718 * 120.00461 * 18 16 14 21 21 H 1.48503 * 109.46960 * 239.99492 * 18 16 14 22 22 C 1.34207 * 118.68825 * 179.97438 * 2 1 3 23 23 O 1.21228 * 119.40912 * 0.55879 * 22 2 1 24 24 H 1.08994 * 109.47278 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46981 * 120.00794 * 1 2 3 26 26 H 1.09009 * 109.47017 * 240.00111 * 1 2 3 27 27 H 1.09002 * 109.52456 * 269.18193 * 5 3 2 28 28 H 1.09002 * 109.57324 * 149.03127 * 5 3 2 29 29 H 1.09002 * 109.62109 * 184.65636 * 6 5 3 30 30 H 1.09001 * 109.76969 * 64.20253 * 6 5 3 31 31 H 1.00901 * 111.00067 * 279.07745 * 9 7 6 32 32 H 1.09001 * 109.46798 * 300.00327 * 10 9 7 33 33 H 1.08998 * 109.46961 * 60.00043 * 10 9 7 34 34 H 0.97009 * 119.99629 * 359.97438 * 13 11 10 35 35 H 0.97004 * 119.99642 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1092 1.1766 0.0000 4 8 1.4681 2.2054 -0.0105 5 6 3.6135 1.2442 0.0122 6 6 4.1787 0.0000 -0.6811 7 6 3.6136 -1.2441 0.0124 8 1 3.9692 -1.2803 1.0422 9 7 4.0567 -2.4485 -0.7025 10 6 4.0646 -3.6166 0.1884 11 6 4.5240 -4.8300 -0.5781 12 8 4.8166 -4.7314 -1.7511 13 7 4.6097 -6.0247 0.0396 14 6 5.0282 -7.1285 -0.6576 15 1 5.2887 -7.0407 -1.7019 16 6 5.1161 -8.3604 -0.0207 17 7 4.7986 -8.4672 1.2500 18 14 5.6855 -9.8644 -0.9710 19 1 5.9812 -9.4805 -2.3746 20 1 6.9124 -10.4135 -0.3395 21 1 4.6164 -10.8949 -0.9537 22 6 2.1092 -1.1773 0.0005 23 8 1.4686 -2.2065 -0.0093 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 -0.3633 -0.5139 0.8901 27 1 3.9682 1.2799 1.0423 28 1 3.9432 2.1379 -0.5176 29 1 5.2660 0.0001 -0.6040 30 1 3.8864 -0.0017 -1.7312 31 1 3.4837 -2.6178 -1.5156 32 1 4.7444 -3.4341 1.0207 33 1 3.0587 -3.7879 0.5718 34 1 4.3761 -6.1035 0.9779 35 1 4.8596 -9.3273 1.6944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090028621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:04 Heat of formation + Delta-G solvation = -126.617292 kcal Electronic energy + Delta-G solvation = -20469.591857 eV Core-core repulsion = 17080.712723 eV Total energy + Delta-G solvation = -3388.879134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.77515 -40.37746 -39.88071 -37.34412 -36.45587 -35.92171 -34.08510 -33.23579 -29.65969 -28.66276 -27.35118 -25.52514 -24.17396 -23.57940 -21.20251 -20.02969 -19.61073 -18.64247 -18.30600 -17.82396 -17.40639 -16.90657 -16.45009 -16.13697 -15.75334 -15.62322 -15.52438 -15.21781 -14.80125 -14.17075 -14.04156 -13.77152 -13.53571 -13.43270 -13.38241 -13.11962 -12.85931 -12.61978 -12.39549 -12.10699 -12.08913 -11.58058 -11.50999 -11.22308 -10.87866 -10.37808 -10.01574 -9.58438 -8.46440 -5.95222 0.39886 1.37323 1.42538 1.48474 1.56985 1.67975 2.05157 2.29259 2.76452 2.86714 3.20876 3.42203 3.62479 3.71140 4.01669 4.14788 4.24976 4.27951 4.32031 4.37669 4.43708 4.57202 4.59699 4.69308 4.87970 5.02027 5.20868 5.41565 5.66023 5.84175 6.02610 6.07446 6.33172 6.59338 6.65769 7.12512 7.55683 8.10502 8.71297 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044534 B = 0.003623 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.580814 B = 7726.322432 C = 8015.664184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.571 5.571 3 C 0.522 3.478 4 O -0.538 6.538 5 C -0.127 4.127 6 C -0.102 4.102 7 C 0.070 3.930 8 H 0.150 0.850 9 N -0.640 5.640 10 C 0.058 3.942 11 C 0.439 3.561 12 O -0.623 6.623 13 N -0.573 5.573 14 C -0.334 4.334 15 H 0.080 0.920 16 C -0.013 4.013 17 N -0.921 5.921 18 Si 0.994 3.006 19 H -0.273 1.273 20 H -0.269 1.269 21 H -0.273 1.273 22 C 0.491 3.509 23 O -0.532 6.532 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.144 0.856 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.072 0.928 31 H 0.345 0.655 32 H 0.120 0.880 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.637 18.996 2.834 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.314 5.314 3 C 0.315 3.685 4 O -0.413 6.413 5 C -0.167 4.167 6 C -0.140 4.140 7 C -0.043 4.043 8 H 0.168 0.832 9 N -0.270 5.270 10 C -0.074 4.074 11 C 0.227 3.773 12 O -0.510 6.510 13 N -0.210 5.210 14 C -0.463 4.463 15 H 0.098 0.902 16 C -0.213 4.213 17 N -0.562 5.562 18 Si 0.817 3.183 19 H -0.197 1.197 20 H -0.194 1.194 21 H -0.198 1.198 22 C 0.280 3.720 23 O -0.406 6.406 24 H 0.119 0.881 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.161 0.839 28 H 0.156 0.844 29 H 0.144 0.856 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.138 0.862 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.420 18.999 2.253 19.284 hybrid contribution -1.393 -1.355 0.123 1.947 sum -3.813 17.644 2.376 18.207 Atomic orbital electron populations 1.21972 0.78141 1.04932 1.03574 1.46797 1.10319 1.08184 1.66072 1.21906 0.93200 0.81325 0.72115 1.90715 1.69795 1.33873 1.46943 1.22060 0.85857 1.01668 1.07083 1.21722 1.04375 0.88357 0.99566 1.22320 0.85159 0.93530 1.03332 0.83234 1.60503 1.56428 1.01780 1.08242 1.21720 1.01644 0.88361 0.95710 1.20778 0.83196 0.85202 0.88135 1.90491 1.55945 1.86004 1.18538 1.41921 1.59085 1.06978 1.12978 1.19719 1.43122 0.87329 0.96162 0.90235 1.26055 0.97021 1.01418 0.96798 1.69682 1.48579 1.27270 1.10628 0.84859 0.78194 0.77142 0.78063 1.19721 1.19412 1.19784 1.23020 0.93723 0.82146 0.73105 1.90773 1.69507 1.34285 1.46006 0.88051 0.91151 0.90543 0.83855 0.84407 0.85599 0.90906 0.83604 0.86209 0.91846 0.77005 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 9.81 127.77 1.25 2.36 16 2 N -0.57 -11.75 2.93 -781.04 -2.29 -14.04 16 3 C 0.52 9.22 7.48 87.72 0.66 9.88 16 4 O -0.54 -12.72 16.19 -2.86 -0.05 -12.76 16 5 C -0.13 -1.09 6.07 29.89 0.18 -0.91 16 6 C -0.10 -1.21 5.70 30.75 0.18 -1.03 16 7 C 0.07 1.31 2.72 44.21 0.12 1.43 16 8 H 0.15 2.00 7.80 -2.38 -0.02 1.98 16 9 N -0.64 -18.51 5.74 -499.22 -2.87 -21.37 16 10 C 0.06 1.95 5.83 85.55 0.50 2.45 16 11 C 0.44 21.00 7.82 87.66 0.69 21.69 16 12 O -0.62 -34.47 15.78 -3.08 -0.05 -34.52 16 13 N -0.57 -29.70 5.29 -306.99 -1.62 -31.33 16 14 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 15 H 0.08 4.86 7.16 -2.92 -0.02 4.83 16 16 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 17 N -0.92 -50.02 13.05 21.66 0.28 -49.74 16 18 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 C 0.49 11.55 7.08 87.71 0.62 12.17 16 23 O -0.53 -17.08 14.81 -2.87 -0.04 -17.12 16 24 H 0.10 1.91 6.73 -2.39 -0.02 1.89 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.14 0.46 8.14 -2.39 -0.02 0.45 16 28 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.34 11.58 8.02 -89.69 -0.72 10.86 16 32 H 0.12 3.31 8.06 -2.39 -0.02 3.29 16 33 H 0.06 2.18 6.71 -2.39 -0.02 2.17 16 34 H 0.40 19.56 7.90 -92.70 -0.73 18.83 16 35 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -75.78 301.88 0.56 -75.22 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.31 Total: 31.00 kcal Atomic # 6 Polarization: 24.02 SS G_CDS: 5.47 Total: 29.49 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -6.49 Total: -116.47 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: -0.14 Total: -64.40 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -75.78 0.56 -75.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090028621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.397 kcal (2) G-P(sol) polarization free energy of solvation -75.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds