Wall clock time and date at job start Mon Mar 30 2020 05:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00490 * 2 1 4 4 C 1.50694 * 109.47160 * 270.00435 * 3 2 1 5 5 H 1.08009 * 120.00058 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00296 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 120.00059 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47257 * 89.99638 * 8 6 4 10 10 H 1.48498 * 109.47140 * 209.99858 * 8 6 4 11 11 H 1.48500 * 109.47002 * 329.99819 * 8 6 4 12 12 C 1.34779 * 119.99712 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99927 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00389 * 0.02562 * 12 2 1 15 15 H 1.09004 * 109.46818 * 59.99315 * 14 12 2 16 16 C 1.53000 * 109.46903 * 300.00124 * 14 12 2 17 17 C 1.52997 * 109.47060 * 299.99558 * 16 14 12 18 18 C 1.53006 * 109.47127 * 300.00449 * 17 16 14 19 19 C 1.52997 * 109.47164 * 59.99836 * 18 17 16 20 20 C 1.52996 * 109.47592 * 179.97438 * 14 12 2 21 21 H 1.08992 * 109.47554 * 179.97438 * 20 14 12 22 22 C 1.50701 * 109.46990 * 300.00167 * 20 14 12 23 23 O 1.20826 * 119.99842 * 0.02562 * 22 20 14 24 24 O 1.34228 * 120.00108 * 179.97438 * 22 20 14 25 25 H 1.09000 * 109.46769 * 269.99999 * 1 2 3 26 26 H 1.08997 * 109.46822 * 29.99617 * 1 2 3 27 27 H 1.08996 * 109.47349 * 150.00307 * 1 2 3 28 28 H 1.09004 * 109.46519 * 30.00117 * 3 2 1 29 29 H 1.08994 * 109.47256 * 149.99890 * 3 2 1 30 30 H 0.97001 * 120.00121 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47398 * 59.99727 * 16 14 12 32 32 H 1.09001 * 109.47194 * 179.97438 * 16 14 12 33 33 H 1.08998 * 109.47533 * 59.99948 * 17 16 14 34 34 H 1.08996 * 109.47853 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 36 36 H 1.09000 * 109.47050 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.47045 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47375 * 59.99966 * 19 18 17 39 39 H 0.96695 * 117.00593 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1261 2.8778 -1.6727 7 7 3.5527 3.6184 -0.6731 8 14 3.4380 3.4168 -3.4339 9 1 2.3078 4.2590 -3.9014 10 1 4.6980 4.2002 -3.4961 11 1 3.5561 2.2195 -4.3044 12 6 2.1388 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3853 -2.4724 0.0005 15 1 0.7589 -2.5302 -0.8897 16 6 0.5052 -2.5531 1.2494 17 6 1.3844 -2.4718 2.4990 18 6 2.3787 -3.6348 2.4995 19 6 3.2587 -3.5540 1.2506 20 6 2.3795 -3.6353 0.0005 21 1 1.8345 -4.5792 0.0010 22 6 3.2459 -3.5555 -1.2299 23 8 3.0850 -2.6600 -2.0250 24 8 4.1970 -4.4786 -1.4421 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6085 2.0283 0.5139 29 1 3.1499 1.1383 0.5138 30 1 4.0296 4.4443 -0.8504 31 1 -0.2031 -1.7246 1.2490 32 1 -0.0401 -3.4969 1.2493 33 1 1.9295 -1.5279 2.4990 34 1 0.7576 -2.5298 3.3888 35 1 1.8336 -4.5788 2.4996 36 1 3.0053 -3.5766 3.3895 37 1 3.9667 -4.3828 1.2508 38 1 3.8037 -2.6100 1.2506 39 1 4.7273 -4.3860 -2.2453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016007459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:17 Heat of formation + Delta-G solvation = -134.151863 kcal Electronic energy + Delta-G solvation = -22333.252998 eV Core-core repulsion = 19047.587484 eV Total energy + Delta-G solvation = -3285.665514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85830 -39.02208 -36.75179 -35.73311 -34.80424 -32.63631 -31.16220 -30.89184 -27.64559 -25.96270 -24.57194 -23.24469 -22.30709 -20.96043 -20.25895 -17.96705 -17.61479 -16.63634 -16.39833 -16.17223 -15.19498 -15.14740 -14.87933 -14.44005 -14.06911 -13.57230 -13.46645 -12.98386 -12.79225 -12.51919 -12.34192 -12.09991 -11.97051 -11.74694 -11.47627 -11.16872 -11.07634 -10.92637 -10.81295 -10.67734 -10.49351 -10.43038 -10.07105 -10.03597 -9.87715 -9.50838 -8.61442 -8.36181 -7.51853 -5.96919 -4.00146 2.66052 3.30770 3.35078 3.41267 3.47853 3.60283 4.02299 4.51844 4.57350 4.81569 4.90355 5.14742 5.24044 5.28073 5.37597 5.42232 5.44246 5.56350 5.62644 5.70625 5.82369 5.89251 5.91876 6.02299 6.15260 6.20984 6.24215 6.32585 6.38526 6.64290 6.86058 7.13124 7.51602 7.65320 8.00896 8.28783 8.32950 8.52987 9.00790 9.23401 9.64654 11.11149 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.006718 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.861297 B = 4166.862278 C = 4866.701878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.601 5.601 3 C 0.248 3.752 4 C -0.519 4.519 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.526 3.474 13 O -0.535 6.535 14 C -0.100 4.100 15 H 0.096 0.904 16 C -0.120 4.120 17 C -0.125 4.125 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.051 4.051 21 H 0.104 0.896 22 C 0.481 3.519 23 O -0.489 6.489 24 O -0.525 6.525 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.710 -16.236 5.142 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.333 5.333 3 C 0.129 3.871 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.312 3.688 13 O -0.413 6.413 14 C -0.122 4.122 15 H 0.114 0.886 16 C -0.158 4.158 17 C -0.163 4.163 18 C -0.151 4.151 19 C -0.164 4.164 20 C -0.070 4.070 21 H 0.122 0.878 22 C 0.322 3.678 23 O -0.374 6.374 24 O -0.337 6.337 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -6.259 -15.804 5.315 17.810 hybrid contribution 0.454 0.493 -1.701 1.828 sum -5.805 -15.311 3.614 16.769 Atomic orbital electron populations 1.21761 0.81976 1.02448 0.99998 1.48021 1.05835 1.07746 1.71721 1.19232 0.92395 0.78102 0.97380 1.21474 1.35990 1.05894 0.92485 0.92425 1.24923 0.95482 0.96474 0.97315 1.69936 1.38836 1.14368 1.30626 0.86520 0.77581 0.78527 0.84975 1.20693 1.21155 1.19881 1.19819 0.87814 0.84562 0.76564 1.90554 1.13950 1.86696 1.50094 1.21288 0.97016 0.93441 1.00439 0.88554 1.21789 0.97747 1.03256 0.92979 1.21592 0.97773 0.99633 0.97286 1.21504 0.97605 0.98234 0.97716 1.21840 0.97728 1.05479 0.91377 1.20716 0.94923 0.99668 0.91736 0.87841 1.23226 0.78907 0.78341 0.87372 1.90797 1.67608 1.32659 1.46360 1.84469 1.47319 1.53296 1.48630 0.93552 0.90994 0.92423 0.95222 0.93994 0.92871 0.89663 0.91188 0.91307 0.91715 0.92184 0.91644 0.91278 0.87857 0.73735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 8.80 59.85 0.53 1.87 16 2 N -0.60 -13.12 2.86 -182.96 -0.52 -13.64 16 3 C 0.25 6.69 5.16 -5.20 -0.03 6.67 16 4 C -0.52 -15.45 9.39 -34.45 -0.32 -15.77 16 5 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 8 Si 0.90 22.89 29.54 -169.99 -5.02 17.87 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 12 C 0.53 11.10 4.55 -10.98 -0.05 11.05 16 13 O -0.54 -13.42 11.43 -15.90 -0.18 -13.60 16 14 C -0.10 -1.54 1.39 -91.77 -0.13 -1.67 16 15 H 0.10 1.44 7.36 -51.93 -0.38 1.06 16 16 C -0.12 -1.40 5.09 -26.73 -0.14 -1.53 16 17 C -0.13 -1.51 5.70 -26.73 -0.15 -1.66 16 18 C -0.11 -1.27 5.92 -26.73 -0.16 -1.42 16 19 C -0.13 -1.77 4.87 -26.71 -0.13 -1.90 16 20 C -0.05 -0.72 2.39 -91.75 -0.22 -0.94 16 21 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 22 C 0.48 8.17 6.65 36.01 0.24 8.41 16 23 O -0.49 -10.63 14.92 -25.91 -0.39 -11.01 16 24 O -0.52 -7.13 13.33 -39.25 -0.52 -7.65 16 25 H 0.05 0.63 6.95 -51.93 -0.36 0.27 16 26 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.06 0.79 6.01 -51.93 -0.31 0.48 16 28 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 29 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.09 0.95 4.53 -51.93 -0.24 0.72 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.05 7.22 -51.93 -0.37 0.68 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 38 H 0.10 1.87 5.51 -51.93 -0.29 1.58 16 39 H 0.40 4.04 9.10 45.56 0.41 4.45 16 LS Contribution 307.24 15.07 4.63 4.63 Total: -1.00 -36.78 307.24 -6.76 -43.54 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.84 Total: 1.84 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.65 Total: 4.77 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.21 Total: -40.38 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.09 Total: -32.26 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.78 -6.76 -43.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016007459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.610 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds