Wall clock time and date at job start Mon Mar 30 2020 05:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00490 * 2 1 4 4 C 1.50694 * 109.47160 * 270.00435 * 3 2 1 5 5 H 1.08009 * 120.00058 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00296 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 120.00059 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47257 * 89.99638 * 8 6 4 10 10 H 1.48498 * 109.47140 * 209.99858 * 8 6 4 11 11 H 1.48500 * 109.47002 * 329.99819 * 8 6 4 12 12 C 1.34779 * 119.99712 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99927 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00389 * 0.02562 * 12 2 1 15 15 H 1.09004 * 109.46818 * 59.99315 * 14 12 2 16 16 C 1.53000 * 109.46903 * 300.00124 * 14 12 2 17 17 C 1.52997 * 109.47060 * 299.99558 * 16 14 12 18 18 C 1.53006 * 109.47127 * 300.00449 * 17 16 14 19 19 C 1.52997 * 109.47164 * 59.99836 * 18 17 16 20 20 C 1.52996 * 109.47592 * 179.97438 * 14 12 2 21 21 H 1.08992 * 109.47554 * 179.97438 * 20 14 12 22 22 C 1.50701 * 109.46990 * 300.00167 * 20 14 12 23 23 O 1.20826 * 119.99842 * 0.02562 * 22 20 14 24 24 O 1.34228 * 120.00108 * 179.97438 * 22 20 14 25 25 H 1.09000 * 109.46769 * 269.99999 * 1 2 3 26 26 H 1.08997 * 109.46822 * 29.99617 * 1 2 3 27 27 H 1.08996 * 109.47349 * 150.00307 * 1 2 3 28 28 H 1.09004 * 109.46519 * 30.00117 * 3 2 1 29 29 H 1.08994 * 109.47256 * 149.99890 * 3 2 1 30 30 H 0.97001 * 120.00121 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47398 * 59.99727 * 16 14 12 32 32 H 1.09001 * 109.47194 * 179.97438 * 16 14 12 33 33 H 1.08998 * 109.47533 * 59.99948 * 17 16 14 34 34 H 1.08996 * 109.47853 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 36 36 H 1.09000 * 109.47050 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.47045 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47375 * 59.99966 * 19 18 17 39 39 H 0.96695 * 117.00593 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1261 2.8778 -1.6727 7 7 3.5527 3.6184 -0.6731 8 14 3.4380 3.4168 -3.4339 9 1 2.3078 4.2590 -3.9014 10 1 4.6980 4.2002 -3.4961 11 1 3.5561 2.2195 -4.3044 12 6 2.1388 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3853 -2.4724 0.0005 15 1 0.7589 -2.5302 -0.8897 16 6 0.5052 -2.5531 1.2494 17 6 1.3844 -2.4718 2.4990 18 6 2.3787 -3.6348 2.4995 19 6 3.2587 -3.5540 1.2506 20 6 2.3795 -3.6353 0.0005 21 1 1.8345 -4.5792 0.0010 22 6 3.2459 -3.5555 -1.2299 23 8 3.0850 -2.6600 -2.0250 24 8 4.1970 -4.4786 -1.4421 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6085 2.0283 0.5139 29 1 3.1499 1.1383 0.5138 30 1 4.0296 4.4443 -0.8504 31 1 -0.2031 -1.7246 1.2490 32 1 -0.0401 -3.4969 1.2493 33 1 1.9295 -1.5279 2.4990 34 1 0.7576 -2.5298 3.3888 35 1 1.8336 -4.5788 2.4996 36 1 3.0053 -3.5766 3.3895 37 1 3.9667 -4.3828 1.2508 38 1 3.8037 -2.6100 1.2506 39 1 4.7273 -4.3860 -2.2453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016007459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:17 Heat of formation + Delta-G solvation = -160.686262 kcal Electronic energy + Delta-G solvation = -22334.403616 eV Core-core repulsion = 19047.587484 eV Total energy + Delta-G solvation = -3286.816132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.17246 -40.42232 -38.06776 -37.03718 -36.53278 -34.79812 -32.25538 -32.11875 -29.57850 -27.48208 -26.02957 -24.83876 -23.62008 -22.07416 -21.57849 -19.48146 -18.87396 -18.70645 -17.80970 -17.58871 -16.94519 -16.55273 -16.33525 -16.03495 -15.47573 -14.77704 -14.66903 -14.49378 -14.18999 -14.00684 -13.66835 -13.48426 -13.39761 -13.12500 -13.01513 -12.90928 -12.66310 -12.48228 -12.40949 -12.25492 -12.01252 -11.75286 -11.69904 -11.51600 -11.06592 -11.00947 -10.66887 -10.22145 -9.31842 -8.24748 -6.39079 1.29680 1.33425 1.37022 1.44432 2.00758 2.22400 2.32834 2.50125 3.03179 3.46032 3.66339 3.89091 4.09096 4.17884 4.25397 4.39606 4.42703 4.47049 4.57695 4.62429 4.67294 4.82387 4.90294 5.01584 5.03234 5.10740 5.20906 5.24575 5.29707 5.34217 5.41099 5.54435 5.62388 5.71923 5.88836 6.07073 6.68991 6.88504 7.08415 7.27617 7.62940 8.81508 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.006718 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.861297 B = 4166.862278 C = 4866.701878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.614 5.614 3 C 0.266 3.734 4 C -0.539 4.539 5 H 0.043 0.957 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.964 3.036 9 H -0.258 1.258 10 H -0.277 1.277 11 H -0.282 1.282 12 C 0.514 3.486 13 O -0.587 6.587 14 C -0.092 4.092 15 H 0.105 0.895 16 C -0.114 4.114 17 C -0.127 4.127 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.052 4.052 21 H 0.156 0.844 22 C 0.478 3.522 23 O -0.549 6.549 24 O -0.514 6.514 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.022 0.978 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.021 0.979 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 -18.666 5.284 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.346 5.346 3 C 0.144 3.856 4 C -0.578 4.578 5 H 0.061 0.939 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.789 3.211 9 H -0.183 1.183 10 H -0.202 1.202 11 H -0.207 1.207 12 C 0.304 3.696 13 O -0.467 6.467 14 C -0.113 4.113 15 H 0.123 0.877 16 C -0.151 4.151 17 C -0.165 4.165 18 C -0.144 4.144 19 C -0.162 4.162 20 C -0.071 4.071 21 H 0.174 0.826 22 C 0.322 3.678 23 O -0.438 6.438 24 O -0.327 6.327 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.040 0.960 29 H 0.012 0.988 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.136 0.864 33 H 0.040 0.960 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -8.510 -18.270 5.473 20.885 hybrid contribution 1.235 1.209 -1.710 2.431 sum -7.275 -17.060 3.764 18.925 Atomic orbital electron populations 1.22066 0.78500 1.03502 1.02422 1.48056 1.08065 1.06340 1.72104 1.18620 0.90883 0.80634 0.95442 1.21690 1.36672 1.06215 0.93219 0.93881 1.25824 0.94948 0.96443 1.01902 1.70044 1.39122 1.14783 1.32804 0.85470 0.78426 0.77955 0.79274 1.18293 1.20164 1.20695 1.20983 0.87690 0.86171 0.74799 1.90532 1.16612 1.87668 1.51933 1.21358 0.97194 0.89853 1.02930 0.87684 1.21876 0.96957 1.06054 0.90206 1.21618 0.98112 0.97747 0.98983 1.21510 0.97239 0.99606 0.96010 1.21753 0.98329 1.03133 0.92969 1.20969 0.94658 1.01349 0.90094 0.82625 1.23960 0.78942 0.77450 0.87447 1.90776 1.69466 1.34966 1.48598 1.84434 1.46721 1.52024 1.49491 0.90317 0.92179 0.89156 0.96023 0.98803 0.92384 0.89155 0.86369 0.96032 0.88844 0.88200 0.91442 0.90012 0.93060 0.72085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.44 8.80 127.77 1.12 3.56 16 2 N -0.61 -27.71 2.86 -851.16 -2.43 -30.14 16 3 C 0.27 15.25 5.16 85.63 0.44 15.69 16 4 C -0.54 -33.53 9.39 25.60 0.24 -33.29 16 5 H 0.04 2.73 7.81 -2.91 -0.02 2.71 16 6 C 0.01 0.46 5.46 84.65 0.46 0.92 16 7 N -0.93 -58.56 13.29 21.45 0.28 -58.28 16 8 Si 0.96 47.96 29.54 68.60 2.03 49.98 16 9 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.28 -14.25 7.11 99.48 0.71 -13.55 16 12 C 0.51 22.36 4.55 87.66 0.40 22.76 16 13 O -0.59 -31.40 11.43 17.48 0.20 -31.20 16 14 C -0.09 -2.64 1.39 -11.54 -0.02 -2.66 16 15 H 0.11 2.86 7.36 -2.39 -0.02 2.84 16 16 C -0.11 -2.17 5.09 30.59 0.16 -2.01 16 17 C -0.13 -2.72 5.70 30.60 0.17 -2.55 16 18 C -0.11 -2.03 5.92 30.60 0.18 -1.85 16 19 C -0.12 -3.30 4.87 30.61 0.15 -3.15 16 20 C -0.05 -1.34 2.39 -11.52 -0.03 -1.37 16 21 H 0.16 2.46 8.14 -2.39 -0.02 2.44 16 22 C 0.48 16.05 6.65 71.24 0.47 16.52 16 23 O -0.55 -24.49 14.92 28.81 0.43 -24.07 16 24 O -0.51 -13.42 13.33 -51.40 -0.69 -14.11 16 25 H 0.08 1.97 6.95 -2.39 -0.02 1.95 16 26 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 27 H 0.09 2.24 6.01 -2.39 -0.01 2.23 16 28 H 0.02 1.25 8.07 -2.38 -0.02 1.23 16 29 H -0.01 -0.41 7.42 -2.39 -0.02 -0.42 16 30 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 31 H 0.09 1.64 4.53 -2.39 -0.01 1.63 16 32 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.02 0.65 7.22 -2.39 -0.02 0.64 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 38 H 0.05 1.94 5.51 -2.39 -0.01 1.93 16 39 H 0.42 8.17 9.10 -74.06 -0.67 7.49 16 Total: -1.00 -87.82 307.24 3.97 -83.84 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.39 Total: 11.39 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 3.76 Total: 12.58 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -2.15 Total: -88.42 kcal Atomic # 8 Polarization: -69.32 SS G_CDS: -0.06 Total: -69.38 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.98 kcal Total: -87.82 3.97 -83.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016007459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.841 kcal (2) G-P(sol) polarization free energy of solvation -87.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds