Wall clock time and date at job start Mon Mar 30 2020 05:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99607 * 2 1 4 4 C 1.50697 * 109.47031 * 269.99642 * 3 2 1 5 5 H 1.08007 * 119.99912 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00289 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99920 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00213 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47368 * 59.99435 * 8 6 4 10 10 H 1.48501 * 109.47025 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46900 * 299.99450 * 8 6 4 12 12 C 1.34771 * 120.00097 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99895 * 186.27702 * 12 2 1 14 14 C 1.50697 * 120.00054 * 6.00701 * 12 2 1 15 15 H 1.09006 * 109.47426 * 307.56549 * 14 12 2 16 16 C 1.53001 * 109.47486 * 67.56526 * 14 12 2 17 17 C 1.52999 * 109.47222 * 179.97438 * 16 14 12 18 18 C 1.52993 * 109.47502 * 300.00055 * 17 16 14 19 19 C 1.53009 * 109.46834 * 60.00002 * 18 17 16 20 20 C 1.52996 * 109.47004 * 299.99587 * 19 18 17 21 21 H 1.08992 * 109.47478 * 300.00332 * 20 19 18 22 22 C 1.50703 * 109.46699 * 179.97438 * 20 19 18 23 23 O 1.20826 * 120.00050 * 240.00244 * 22 20 19 24 24 O 1.34228 * 119.99699 * 60.00919 * 22 20 19 25 25 H 1.09002 * 109.47330 * 264.41562 * 1 2 3 26 26 H 1.09001 * 109.47481 * 24.41736 * 1 2 3 27 27 H 1.09006 * 109.46784 * 144.42174 * 1 2 3 28 28 H 1.09000 * 109.47393 * 29.99656 * 3 2 1 29 29 H 1.08997 * 109.47011 * 149.99876 * 3 2 1 30 30 H 0.96998 * 120.00222 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47047 * 300.00562 * 16 14 12 32 32 H 1.09006 * 109.46852 * 60.00171 * 16 14 12 33 33 H 1.09000 * 109.47291 * 179.97438 * 17 16 14 34 34 H 1.09006 * 109.46959 * 60.00369 * 17 16 14 35 35 H 1.08997 * 109.47439 * 300.00344 * 18 17 16 36 36 H 1.09001 * 109.47659 * 179.97438 * 18 17 16 37 37 H 1.08999 * 109.46531 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.46744 * 60.00518 * 19 18 17 39 39 H 0.96700 * 116.99808 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5540 3.6177 -0.6733 8 14 3.4375 3.4170 -3.4340 9 1 2.1397 3.5952 -4.1335 10 1 4.1800 4.7030 -3.4340 11 1 4.2394 2.3819 -4.1346 12 6 2.1389 -1.1671 0.0005 13 8 3.3462 -1.1702 0.1154 14 6 1.3916 -2.4687 -0.1355 15 1 0.5965 -2.5107 0.6090 16 6 0.7841 -2.5641 -1.5364 17 6 0.0260 -3.8859 -1.6747 18 6 0.9913 -5.0527 -1.4569 19 6 1.5988 -4.9573 -0.0558 20 6 2.3570 -3.6357 0.0823 21 1 3.1520 -3.5933 -0.6621 22 6 2.9548 -3.5415 1.4625 23 8 2.6411 -2.6341 2.1961 24 8 3.8358 -4.4655 1.8767 25 1 -0.3634 -0.1000 1.0228 26 1 -0.3634 0.9357 -0.4248 27 1 -0.3633 -0.8359 -0.5980 28 1 1.6083 2.0284 0.5138 29 1 3.1498 1.1385 0.5138 30 1 4.0308 4.4436 -0.8505 31 1 0.0968 -1.7326 -1.6918 32 1 1.5792 -2.5222 -2.2809 33 1 -0.4072 -3.9537 -2.6726 34 1 -0.7691 -3.9283 -0.9302 35 1 1.7863 -5.0104 -2.2013 36 1 0.4511 -5.9944 -1.5549 37 1 2.2868 -5.7884 0.0991 38 1 0.8037 -4.9998 0.6885 39 1 4.1924 -4.3629 2.7697 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016007461.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:19 Heat of formation + Delta-G solvation = -141.161308 kcal Electronic energy + Delta-G solvation = -21923.088622 eV Core-core repulsion = 18637.119156 eV Total energy + Delta-G solvation = -3285.969466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.74993 -38.95831 -37.25384 -35.84483 -34.74085 -32.64527 -31.29530 -31.05288 -27.67583 -25.91001 -24.63554 -23.35265 -22.39021 -21.07687 -19.88473 -18.38745 -17.75290 -16.61485 -16.44256 -16.33902 -15.49473 -15.19081 -14.71324 -14.56657 -13.96797 -13.77814 -13.70076 -13.38664 -12.79372 -12.47567 -12.39249 -11.98012 -11.93746 -11.75305 -11.39660 -11.26283 -11.19750 -11.07391 -10.97168 -10.79335 -10.65003 -10.49009 -10.28376 -10.10507 -10.00800 -9.58069 -8.73028 -8.39731 -7.51661 -6.00066 -4.05390 2.54180 3.20681 3.32847 3.37347 3.39406 3.57393 4.00003 4.45902 4.49201 4.70150 4.74673 5.06409 5.11951 5.27189 5.28846 5.32883 5.35875 5.37107 5.53081 5.66775 5.79237 5.83315 5.94357 5.96666 6.01154 6.03518 6.08254 6.16872 6.31042 6.43743 6.73532 7.14942 7.54689 7.64321 7.97064 8.16062 8.28769 8.53502 8.94948 9.20266 9.59577 11.07819 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.005821 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.190299 B = 4809.165571 C = 5310.957100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.600 5.600 3 C 0.246 3.754 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.546 6.546 14 C -0.094 4.094 15 H 0.095 0.905 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.058 4.058 21 H 0.116 0.884 22 C 0.488 3.512 23 O -0.501 6.501 24 O -0.522 6.522 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.018 -17.856 0.397 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.332 5.332 3 C 0.127 3.873 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.424 6.424 14 C -0.116 4.116 15 H 0.113 0.887 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.077 4.077 21 H 0.133 0.867 22 C 0.330 3.670 23 O -0.387 6.387 24 O -0.334 6.334 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.537 -17.421 0.318 18.984 hybrid contribution 0.441 0.648 -0.282 0.833 sum -7.096 -16.773 0.037 18.212 Atomic orbital electron populations 1.21880 0.81802 1.03020 1.00324 1.47974 1.05939 1.07681 1.71565 1.19260 0.92707 0.78126 0.97248 1.21419 1.36507 1.06315 0.92298 0.92536 1.24948 0.95431 0.96427 0.97356 1.69933 1.38319 1.14324 1.30764 0.86569 0.78324 0.77830 0.84736 1.20248 1.21179 1.20231 1.19927 0.87704 0.84739 0.76712 1.90622 1.14508 1.87039 1.50193 1.21252 0.98087 0.92650 0.99566 0.88683 1.21722 1.00598 0.98375 0.94862 1.21584 0.97989 0.94139 1.01988 1.21559 0.99202 0.98505 0.96379 1.21552 0.99663 0.95208 0.98297 1.20806 0.98667 0.96337 0.91906 0.86653 1.23228 0.75969 0.78243 0.89602 1.90730 1.59060 1.32716 1.56206 1.84491 1.57240 1.52780 1.38856 0.93959 0.90748 0.91707 0.95197 0.93833 0.92694 0.89624 0.90857 0.91370 0.91698 0.91370 0.91427 0.90387 0.91432 0.73683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 9.87 59.85 0.59 1.83 16 2 N -0.60 -13.52 2.86 -182.96 -0.52 -14.04 16 3 C 0.25 6.77 5.18 -5.20 -0.03 6.75 16 4 C -0.53 -15.24 9.39 -34.44 -0.32 -15.57 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.52 11.48 5.74 -10.99 -0.06 11.41 16 13 O -0.55 -14.33 14.13 -13.49 -0.19 -14.52 16 14 C -0.09 -1.46 0.89 -91.77 -0.08 -1.55 16 15 H 0.10 1.39 7.70 -51.93 -0.40 0.99 16 16 C -0.12 -1.51 4.88 -26.73 -0.13 -1.64 16 17 C -0.12 -1.10 5.92 -26.74 -0.16 -1.26 16 18 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 19 C -0.11 -1.10 5.14 -26.73 -0.14 -1.23 16 20 C -0.06 -0.82 1.79 -91.77 -0.16 -0.99 16 21 H 0.12 1.74 8.02 -51.93 -0.42 1.32 16 22 C 0.49 7.93 6.69 36.01 0.24 8.17 16 23 O -0.50 -10.08 15.13 -25.23 -0.38 -10.46 16 24 O -0.52 -6.66 13.33 -39.25 -0.52 -7.18 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.26 8.03 -51.93 -0.42 0.85 16 27 H 0.06 0.89 4.22 -51.93 -0.22 0.67 16 28 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.04 1.37 7.34 -51.93 -0.38 0.99 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 31 H 0.09 1.10 5.32 -51.93 -0.28 0.82 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.41 3.57 9.10 45.56 0.41 3.99 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -36.66 315.50 -6.70 -43.36 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.04 Total: 1.14 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -0.51 Total: 6.41 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.21 Total: -40.58 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.10 Total: -32.16 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -36.66 -6.70 -43.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016007461.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.803 kcal (2) G-P(sol) polarization free energy of solvation -36.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds