Wall clock time and date at job start Mon Mar 30 2020 05:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99607 * 2 1 4 4 C 1.50697 * 109.47031 * 269.99642 * 3 2 1 5 5 H 1.08007 * 119.99912 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00289 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99920 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00213 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47368 * 59.99435 * 8 6 4 10 10 H 1.48501 * 109.47025 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46900 * 299.99450 * 8 6 4 12 12 C 1.34771 * 120.00097 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99895 * 186.27702 * 12 2 1 14 14 C 1.50697 * 120.00054 * 6.00701 * 12 2 1 15 15 H 1.09006 * 109.47426 * 307.56549 * 14 12 2 16 16 C 1.53001 * 109.47486 * 67.56526 * 14 12 2 17 17 C 1.52999 * 109.47222 * 179.97438 * 16 14 12 18 18 C 1.52993 * 109.47502 * 300.00055 * 17 16 14 19 19 C 1.53009 * 109.46834 * 60.00002 * 18 17 16 20 20 C 1.52996 * 109.47004 * 299.99587 * 19 18 17 21 21 H 1.08992 * 109.47478 * 300.00332 * 20 19 18 22 22 C 1.50703 * 109.46699 * 179.97438 * 20 19 18 23 23 O 1.20826 * 120.00050 * 240.00244 * 22 20 19 24 24 O 1.34228 * 119.99699 * 60.00919 * 22 20 19 25 25 H 1.09002 * 109.47330 * 264.41562 * 1 2 3 26 26 H 1.09001 * 109.47481 * 24.41736 * 1 2 3 27 27 H 1.09006 * 109.46784 * 144.42174 * 1 2 3 28 28 H 1.09000 * 109.47393 * 29.99656 * 3 2 1 29 29 H 1.08997 * 109.47011 * 149.99876 * 3 2 1 30 30 H 0.96998 * 120.00222 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47047 * 300.00562 * 16 14 12 32 32 H 1.09006 * 109.46852 * 60.00171 * 16 14 12 33 33 H 1.09000 * 109.47291 * 179.97438 * 17 16 14 34 34 H 1.09006 * 109.46959 * 60.00369 * 17 16 14 35 35 H 1.08997 * 109.47439 * 300.00344 * 18 17 16 36 36 H 1.09001 * 109.47659 * 179.97438 * 18 17 16 37 37 H 1.08999 * 109.46531 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.46744 * 60.00518 * 19 18 17 39 39 H 0.96700 * 116.99808 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5540 3.6177 -0.6733 8 14 3.4375 3.4170 -3.4340 9 1 2.1397 3.5952 -4.1335 10 1 4.1800 4.7030 -3.4340 11 1 4.2394 2.3819 -4.1346 12 6 2.1389 -1.1671 0.0005 13 8 3.3462 -1.1702 0.1154 14 6 1.3916 -2.4687 -0.1355 15 1 0.5965 -2.5107 0.6090 16 6 0.7841 -2.5641 -1.5364 17 6 0.0260 -3.8859 -1.6747 18 6 0.9913 -5.0527 -1.4569 19 6 1.5988 -4.9573 -0.0558 20 6 2.3570 -3.6357 0.0823 21 1 3.1520 -3.5933 -0.6621 22 6 2.9548 -3.5415 1.4625 23 8 2.6411 -2.6341 2.1961 24 8 3.8358 -4.4655 1.8767 25 1 -0.3634 -0.1000 1.0228 26 1 -0.3634 0.9357 -0.4248 27 1 -0.3633 -0.8359 -0.5980 28 1 1.6083 2.0284 0.5138 29 1 3.1498 1.1385 0.5138 30 1 4.0308 4.4436 -0.8505 31 1 0.0968 -1.7326 -1.6918 32 1 1.5792 -2.5222 -2.2809 33 1 -0.4072 -3.9537 -2.6726 34 1 -0.7691 -3.9283 -0.9302 35 1 1.7863 -5.0104 -2.2013 36 1 0.4511 -5.9944 -1.5549 37 1 2.2868 -5.7884 0.0991 38 1 0.8037 -4.9998 0.6885 39 1 4.1924 -4.3629 2.7697 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016007461.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:19 Heat of formation + Delta-G solvation = -167.003610 kcal Electronic energy + Delta-G solvation = -21924.209228 eV Core-core repulsion = 18637.119156 eV Total energy + Delta-G solvation = -3287.090073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04871 -40.41930 -38.45478 -37.09711 -36.58104 -34.77091 -32.27546 -32.24518 -29.63060 -27.47222 -26.05143 -24.78707 -23.78426 -22.17887 -20.91248 -19.96390 -18.96990 -18.67913 -17.88191 -17.81651 -17.13413 -16.60445 -16.21200 -16.12840 -15.34670 -14.84962 -14.81362 -14.63954 -14.15868 -13.97383 -13.88977 -13.53256 -13.37660 -13.17791 -12.99189 -12.76910 -12.55402 -12.45740 -12.34404 -12.26533 -12.18291 -11.88213 -11.72346 -11.45723 -11.29399 -11.07068 -10.66322 -10.42018 -9.38961 -8.23322 -6.39966 1.28424 1.35291 1.40386 1.47915 1.89967 2.13325 2.30430 2.45807 3.05316 3.39731 3.59126 3.86075 4.02883 4.12202 4.23761 4.29634 4.40042 4.44356 4.47239 4.58492 4.65410 4.80764 4.92080 4.93983 5.00971 5.11176 5.18026 5.22512 5.26366 5.34347 5.39442 5.55169 5.56303 5.64249 5.84739 6.03979 6.67959 6.80076 7.01467 7.26571 7.50308 8.83958 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.005821 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.190299 B = 4809.165571 C = 5310.957100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.261 3.739 4 C -0.542 4.542 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.932 5.932 8 Si 0.973 3.027 9 H -0.256 1.256 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.509 3.491 13 O -0.601 6.601 14 C -0.081 4.081 15 H 0.111 0.889 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.100 4.100 20 C -0.060 4.060 21 H 0.102 0.898 22 C 0.486 3.514 23 O -0.550 6.550 24 O -0.510 6.510 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.017 0.983 29 H -0.011 1.011 30 H 0.267 0.733 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 -20.092 -1.478 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.342 5.342 3 C 0.139 3.861 4 C -0.581 4.581 5 H 0.077 0.923 6 C -0.195 4.195 7 N -0.572 5.572 8 Si 0.797 3.203 9 H -0.180 1.180 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.299 3.701 13 O -0.483 6.483 14 C -0.102 4.102 15 H 0.129 0.871 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.137 4.137 20 C -0.080 4.080 21 H 0.120 0.880 22 C 0.330 3.670 23 O -0.440 6.440 24 O -0.324 6.324 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.122 0.878 28 H 0.035 0.965 29 H 0.007 0.993 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -9.638 -19.704 -1.552 21.989 hybrid contribution 1.152 1.326 0.406 1.803 sum -8.486 -18.378 -1.145 20.275 Atomic orbital electron populations 1.22177 0.78259 1.04584 1.02304 1.48037 1.08199 1.06313 1.71618 1.18706 0.90752 0.80401 0.96235 1.21681 1.36960 1.06726 0.92699 0.92256 1.25974 0.94794 0.96358 1.02399 1.70079 1.38865 1.14806 1.33429 0.85389 0.79009 0.77328 0.78611 1.18043 1.20433 1.20079 1.21153 0.87543 0.86472 0.74959 1.90575 1.17269 1.88058 1.52423 1.21260 0.97980 0.89055 1.01942 0.87083 1.21755 1.00316 1.01046 0.92137 1.21586 0.97921 0.91625 1.03779 1.21595 0.99207 0.99620 0.94999 1.21586 0.99782 0.92506 0.99874 1.20948 0.98560 0.98256 0.90198 0.88025 1.23736 0.75650 0.77622 0.90038 1.90711 1.60896 1.34588 1.57762 1.84449 1.56224 1.51448 1.40230 0.92182 0.91083 0.87842 0.96533 0.99296 0.92405 0.89610 0.92520 0.89448 0.89907 0.91738 0.88472 0.89148 0.90132 0.71731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.26 9.87 127.77 1.26 3.52 16 2 N -0.61 -28.38 2.86 -851.14 -2.43 -30.81 16 3 C 0.26 15.19 5.18 85.63 0.44 15.63 16 4 C -0.54 -32.34 9.39 25.60 0.24 -32.10 16 5 H 0.06 3.42 7.81 -2.91 -0.02 3.39 16 6 C 0.00 0.20 5.46 84.66 0.46 0.66 16 7 N -0.93 -58.66 13.29 21.45 0.28 -58.37 16 8 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 9 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 C 0.51 23.07 5.74 87.66 0.50 23.57 16 13 O -0.60 -33.46 14.13 15.17 0.21 -33.25 16 14 C -0.08 -2.45 0.89 -11.54 -0.01 -2.46 16 15 H 0.11 3.01 7.70 -2.38 -0.02 2.99 16 16 C -0.12 -2.69 4.88 30.59 0.15 -2.54 16 17 C -0.11 -1.56 5.92 30.59 0.18 -1.38 16 18 C -0.12 -1.51 5.92 30.59 0.18 -1.33 16 19 C -0.10 -1.67 5.14 30.60 0.16 -1.51 16 20 C -0.06 -1.66 1.79 -11.54 -0.02 -1.68 16 21 H 0.10 3.09 8.02 -2.39 -0.02 3.07 16 22 C 0.49 15.79 6.69 71.24 0.48 16.27 16 23 O -0.55 -22.76 15.13 28.15 0.43 -22.33 16 24 O -0.51 -12.65 13.33 -51.40 -0.68 -13.34 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 2.38 8.03 -2.39 -0.02 2.36 16 27 H 0.10 2.58 4.22 -2.38 -0.01 2.57 16 28 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 29 H -0.01 -0.76 7.34 -2.39 -0.02 -0.78 16 30 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.09 1.97 5.32 -2.39 -0.01 1.96 16 32 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.33 8.11 -2.39 -0.02 1.31 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.42 7.20 9.10 -74.06 -0.67 6.53 16 Total: -1.00 -85.25 315.50 4.24 -81.01 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.38 Total: 12.81 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 4.03 Total: 16.65 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -2.15 Total: -89.18 kcal Atomic # 8 Polarization: -68.88 SS G_CDS: -0.04 Total: -68.92 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -85.25 4.24 -81.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016007461.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.994 kcal (2) G-P(sol) polarization free energy of solvation -85.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds