Wall clock time and date at job start Mon Mar 30 2020 05:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00164 * 2 1 4 4 C 1.50704 * 109.47022 * 264.14025 * 3 2 1 5 5 H 1.07995 * 120.00215 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99960 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00169 * 180.02562 * 6 4 3 8 8 Si 1.86810 * 120.00011 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.46942 * 269.99976 * 8 6 4 10 10 H 1.48502 * 109.46709 * 29.99858 * 8 6 4 11 11 H 1.48492 * 109.46924 * 149.99813 * 8 6 4 12 12 C 1.34778 * 119.99871 * 179.97438 * 2 1 3 13 13 O 1.21292 * 119.99958 * 3.86279 * 12 2 1 14 14 C 1.50700 * 120.00202 * 183.86144 * 12 2 1 15 15 H 1.09001 * 109.46806 * 26.09809 * 14 12 2 16 16 C 1.52991 * 109.47307 * 266.09264 * 14 12 2 17 17 C 1.53000 * 109.47323 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.47028 * 60.00237 * 17 16 14 19 19 C 1.53007 * 109.47020 * 299.99918 * 18 17 16 20 20 C 1.52998 * 109.46868 * 146.09188 * 14 12 2 21 21 H 1.09006 * 109.47335 * 60.00521 * 20 14 12 22 22 C 1.50700 * 109.47533 * 299.99980 * 20 14 12 23 23 O 1.20832 * 119.99823 * 0.02562 * 22 20 14 24 24 O 1.34227 * 120.00118 * 180.02562 * 22 20 14 25 25 H 1.09004 * 109.47393 * 95.14159 * 1 2 3 26 26 H 1.08997 * 109.47380 * 215.14171 * 1 2 3 27 27 H 1.09005 * 109.47097 * 335.14337 * 1 2 3 28 28 H 1.09006 * 109.47100 * 144.14590 * 3 2 1 29 29 H 1.08999 * 109.47485 * 24.14524 * 3 2 1 30 30 H 0.96998 * 120.00220 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47632 * 300.00038 * 16 14 12 32 32 H 1.09006 * 109.47181 * 59.99843 * 16 14 12 33 33 H 1.08998 * 109.47378 * 300.00430 * 17 16 14 34 34 H 1.08997 * 109.47345 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47283 * 180.02562 * 18 17 16 36 36 H 1.09003 * 109.47319 * 59.99732 * 18 17 16 37 37 H 1.08995 * 109.46846 * 300.00353 * 19 18 17 38 38 H 1.08994 * 109.47054 * 179.97438 * 19 18 17 39 39 H 0.96699 * 116.99870 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5743 1.6312 -1.4134 5 1 2.2956 0.9817 -2.2301 6 6 3.2739 2.7925 -1.6641 7 7 3.6023 3.1091 -2.8976 8 14 3.7554 3.9163 -0.2517 9 1 2.6765 4.9101 -0.0200 10 1 3.9561 3.1078 0.9777 11 1 5.0161 4.6241 -0.5900 12 6 2.1388 -1.1672 0.0005 13 8 1.5344 -2.2165 -0.0698 14 6 3.6433 -1.1688 0.0884 15 1 3.9787 -0.2617 0.5913 16 6 4.2364 -1.2197 -1.3209 17 6 5.7638 -1.2206 -1.2317 18 6 6.2276 -2.4441 -0.4387 19 6 5.6344 -2.3932 0.9708 20 6 4.1065 -2.3925 0.8813 21 1 3.7710 -3.2996 0.3784 22 6 3.5223 -2.3424 2.2695 23 8 2.8082 -1.4224 2.5916 24 8 3.7952 -3.3197 3.1482 25 1 -0.3634 -0.0921 -1.0235 26 1 -0.3634 -0.8403 0.5915 27 1 -0.3633 0.9325 0.4320 28 1 3.1005 1.1668 0.6020 29 1 1.5671 2.0523 0.4204 30 1 4.0948 3.9259 -3.0739 31 1 3.9010 -2.1267 -1.8238 32 1 3.9063 -0.3478 -1.8858 33 1 6.0990 -0.3134 -0.7290 34 1 6.1864 -1.2564 -2.2358 35 1 7.3157 -2.4445 -0.3747 36 1 5.8924 -3.3514 -0.9414 37 1 5.9695 -1.4859 1.4734 38 1 5.9645 -3.2650 1.5356 39 1 3.3973 -3.2442 4.0263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016007463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:22 Heat of formation + Delta-G solvation = -144.133515 kcal Electronic energy + Delta-G solvation = -22398.685036 eV Core-core repulsion = 19112.586685 eV Total energy + Delta-G solvation = -3286.098351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70182 -39.01775 -37.14851 -35.90729 -34.98387 -32.49611 -31.11183 -30.86481 -28.33437 -26.28794 -24.20872 -22.80554 -22.44668 -20.99074 -19.74935 -18.21294 -17.78287 -17.02010 -16.56103 -16.34713 -15.52392 -15.26046 -14.61603 -14.18503 -13.93176 -13.69537 -13.50501 -13.28149 -12.71494 -12.50015 -12.33408 -12.13517 -11.92406 -11.68963 -11.64480 -11.37058 -11.15537 -11.03418 -10.91948 -10.62692 -10.50658 -10.32586 -10.22637 -10.01167 -9.90024 -9.53262 -8.91773 -8.68579 -7.64419 -6.21392 -4.21601 2.44113 3.18339 3.18777 3.26849 3.29229 3.46550 3.93433 4.27626 4.75031 4.90268 4.98244 5.09473 5.36074 5.42075 5.52965 5.54806 5.61185 5.71289 5.76103 5.92492 6.02047 6.11688 6.16536 6.21854 6.29447 6.33354 6.39432 6.47643 6.52046 6.64023 6.71435 6.84322 7.00795 7.40973 7.46076 8.07279 8.20029 8.43730 8.82389 9.01991 9.38798 10.90635 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.008157 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.362473 B = 3431.876308 C = 4001.217589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.589 5.589 3 C 0.208 3.792 4 C -0.537 4.537 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.867 3.133 9 H -0.274 1.274 10 H -0.263 1.263 11 H -0.283 1.283 12 C 0.538 3.462 13 O -0.582 6.582 14 C -0.085 4.085 15 H 0.102 0.898 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.108 4.108 20 C -0.064 4.064 21 H 0.116 0.884 22 C 0.482 3.518 23 O -0.505 6.505 24 O -0.519 6.519 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.029 0.971 30 H 0.266 0.734 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 -9.101 8.291 13.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.318 5.318 3 C 0.086 3.914 4 C -0.575 4.575 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.693 3.307 9 H -0.200 1.200 10 H -0.188 1.188 11 H -0.209 1.209 12 C 0.326 3.674 13 O -0.464 6.464 14 C -0.106 4.106 15 H 0.120 0.880 16 C -0.151 4.151 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.146 4.146 20 C -0.084 4.084 21 H 0.134 0.866 22 C 0.324 3.676 23 O -0.392 6.392 24 O -0.331 6.331 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 4.298 -9.223 7.839 12.845 hybrid contribution -0.118 0.991 1.267 1.612 sum 4.180 -8.233 9.106 12.968 Atomic orbital electron populations 1.21425 0.80764 1.01316 1.01099 1.47661 1.06167 1.07206 1.70725 1.19870 0.92236 0.80980 0.98275 1.21372 1.36466 1.07858 0.91810 0.90153 1.24830 0.95140 0.97176 0.95345 1.69882 1.38956 1.25011 1.18844 0.86989 0.78695 0.81654 0.83342 1.19973 1.18780 1.20852 1.20067 0.89361 0.83121 0.74821 1.90565 1.70653 1.31801 1.53379 1.21146 0.93118 0.97896 0.98434 0.88012 1.21617 0.94706 1.04703 0.94038 1.21524 0.95835 0.97794 1.00289 1.21583 0.99938 0.99312 0.94731 1.21542 0.91535 1.02856 0.98627 1.21018 0.96839 1.02190 0.88305 0.86565 1.23610 0.77756 0.78641 0.87579 1.90739 1.35158 1.34778 1.78536 1.84530 1.71275 1.50048 1.27227 0.93302 0.92326 0.91776 0.94744 0.95338 0.92392 0.92185 0.87178 0.91500 0.91460 0.91641 0.91666 0.91346 0.90673 0.73827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.90 10.39 59.84 0.62 2.52 16 2 N -0.59 -13.08 2.87 -182.95 -0.53 -13.60 16 3 C 0.21 4.81 4.07 -5.19 -0.02 4.79 16 4 C -0.54 -13.95 8.14 -34.44 -0.28 -14.23 16 5 H 0.08 2.32 7.60 -52.49 -0.40 1.92 16 6 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -25.21 13.96 55.43 0.77 -24.44 16 8 Si 0.87 19.87 27.47 -169.99 -4.67 15.20 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.54 11.78 4.86 -10.98 -0.05 11.72 16 13 O -0.58 -13.68 15.82 5.55 0.09 -13.60 16 14 C -0.08 -1.59 1.15 -91.78 -0.11 -1.70 16 15 H 0.10 2.02 5.79 -51.93 -0.30 1.72 16 16 C -0.11 -2.02 5.18 -26.74 -0.14 -2.16 16 17 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 18 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 19 C -0.11 -1.34 5.14 -26.70 -0.14 -1.48 16 20 C -0.06 -1.00 1.85 -91.74 -0.17 -1.17 16 21 H 0.12 1.83 7.85 -51.93 -0.41 1.42 16 22 C 0.48 7.85 7.23 36.01 0.26 8.11 16 23 O -0.51 -9.92 15.55 -18.75 -0.29 -10.21 16 24 O -0.52 -6.44 13.33 -39.25 -0.52 -6.96 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 1.11 7.64 -51.93 -0.40 0.71 16 27 H 0.06 1.11 7.79 -51.93 -0.40 0.70 16 28 H 0.03 0.80 4.99 -51.93 -0.26 0.54 16 29 H 0.03 0.65 7.21 -51.93 -0.37 0.27 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.11 2.36 5.74 -51.93 -0.30 2.07 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 39 H 0.40 3.28 9.10 45.56 0.41 3.69 16 LS Contribution 312.18 15.07 4.70 4.70 Total: -1.00 -32.02 312.18 -5.85 -37.88 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.97 Total: 6.04 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.44 Total: 4.99 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.25 Total: -38.04 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.73 Total: -30.77 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.02 -5.85 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016007463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.255 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds