Wall clock time and date at job start Mon Mar 30 2020 05:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00164 * 2 1 4 4 C 1.50704 * 109.47022 * 264.14025 * 3 2 1 5 5 H 1.07995 * 120.00215 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99960 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00169 * 180.02562 * 6 4 3 8 8 Si 1.86810 * 120.00011 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.46942 * 269.99976 * 8 6 4 10 10 H 1.48502 * 109.46709 * 29.99858 * 8 6 4 11 11 H 1.48492 * 109.46924 * 149.99813 * 8 6 4 12 12 C 1.34778 * 119.99871 * 179.97438 * 2 1 3 13 13 O 1.21292 * 119.99958 * 3.86279 * 12 2 1 14 14 C 1.50700 * 120.00202 * 183.86144 * 12 2 1 15 15 H 1.09001 * 109.46806 * 26.09809 * 14 12 2 16 16 C 1.52991 * 109.47307 * 266.09264 * 14 12 2 17 17 C 1.53000 * 109.47323 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.47028 * 60.00237 * 17 16 14 19 19 C 1.53007 * 109.47020 * 299.99918 * 18 17 16 20 20 C 1.52998 * 109.46868 * 146.09188 * 14 12 2 21 21 H 1.09006 * 109.47335 * 60.00521 * 20 14 12 22 22 C 1.50700 * 109.47533 * 299.99980 * 20 14 12 23 23 O 1.20832 * 119.99823 * 0.02562 * 22 20 14 24 24 O 1.34227 * 120.00118 * 180.02562 * 22 20 14 25 25 H 1.09004 * 109.47393 * 95.14159 * 1 2 3 26 26 H 1.08997 * 109.47380 * 215.14171 * 1 2 3 27 27 H 1.09005 * 109.47097 * 335.14337 * 1 2 3 28 28 H 1.09006 * 109.47100 * 144.14590 * 3 2 1 29 29 H 1.08999 * 109.47485 * 24.14524 * 3 2 1 30 30 H 0.96998 * 120.00220 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47632 * 300.00038 * 16 14 12 32 32 H 1.09006 * 109.47181 * 59.99843 * 16 14 12 33 33 H 1.08998 * 109.47378 * 300.00430 * 17 16 14 34 34 H 1.08997 * 109.47345 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47283 * 180.02562 * 18 17 16 36 36 H 1.09003 * 109.47319 * 59.99732 * 18 17 16 37 37 H 1.08995 * 109.46846 * 300.00353 * 19 18 17 38 38 H 1.08994 * 109.47054 * 179.97438 * 19 18 17 39 39 H 0.96699 * 116.99870 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5743 1.6312 -1.4134 5 1 2.2956 0.9817 -2.2301 6 6 3.2739 2.7925 -1.6641 7 7 3.6023 3.1091 -2.8976 8 14 3.7554 3.9163 -0.2517 9 1 2.6765 4.9101 -0.0200 10 1 3.9561 3.1078 0.9777 11 1 5.0161 4.6241 -0.5900 12 6 2.1388 -1.1672 0.0005 13 8 1.5344 -2.2165 -0.0698 14 6 3.6433 -1.1688 0.0884 15 1 3.9787 -0.2617 0.5913 16 6 4.2364 -1.2197 -1.3209 17 6 5.7638 -1.2206 -1.2317 18 6 6.2276 -2.4441 -0.4387 19 6 5.6344 -2.3932 0.9708 20 6 4.1065 -2.3925 0.8813 21 1 3.7710 -3.2996 0.3784 22 6 3.5223 -2.3424 2.2695 23 8 2.8082 -1.4224 2.5916 24 8 3.7952 -3.3197 3.1482 25 1 -0.3634 -0.0921 -1.0235 26 1 -0.3634 -0.8403 0.5915 27 1 -0.3633 0.9325 0.4320 28 1 3.1005 1.1668 0.6020 29 1 1.5671 2.0523 0.4204 30 1 4.0948 3.9259 -3.0739 31 1 3.9010 -2.1267 -1.8238 32 1 3.9063 -0.3478 -1.8858 33 1 6.0990 -0.3134 -0.7290 34 1 6.1864 -1.2564 -2.2358 35 1 7.3157 -2.4445 -0.3747 36 1 5.8924 -3.3514 -0.9414 37 1 5.9695 -1.4859 1.4734 38 1 5.9645 -3.2650 1.5356 39 1 3.3973 -3.2442 4.0263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016007463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:21 Heat of formation + Delta-G solvation = -166.031826 kcal Electronic energy + Delta-G solvation = -22399.634618 eV Core-core repulsion = 19112.586685 eV Total energy + Delta-G solvation = -3287.047933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06275 -40.50321 -38.46396 -37.09299 -36.80330 -34.51744 -32.35855 -32.15698 -30.22522 -27.89295 -25.51407 -24.51029 -23.93496 -22.20308 -20.98936 -19.84540 -19.08881 -18.94577 -18.04149 -17.81891 -17.03397 -16.61058 -16.40991 -15.75826 -15.34939 -14.98044 -14.85614 -14.67138 -14.34031 -14.00976 -13.85376 -13.80158 -13.40470 -13.25624 -13.07844 -12.77584 -12.56859 -12.51836 -12.35621 -12.18116 -11.94830 -11.86284 -11.68850 -11.48490 -11.34002 -11.08386 -10.74681 -10.53941 -9.44798 -8.28024 -6.33207 1.20049 1.37747 1.40549 1.49431 1.75629 2.07706 2.30389 2.34232 3.04786 3.48753 3.56609 3.85946 4.05187 4.18176 4.24403 4.35386 4.41943 4.46243 4.49363 4.55895 4.57154 4.67772 4.77957 4.82998 4.95078 5.02232 5.09940 5.17786 5.24805 5.32688 5.44014 5.50242 5.53973 5.59202 5.66790 6.21227 6.57969 6.70069 6.97813 7.24087 7.34689 8.87371 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.008157 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.362473 B = 3431.876308 C = 4001.217589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.601 5.601 3 C 0.217 3.783 4 C -0.530 4.530 5 H 0.037 0.963 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.930 3.070 9 H -0.267 1.267 10 H -0.247 1.247 11 H -0.279 1.279 12 C 0.529 3.471 13 O -0.603 6.603 14 C -0.081 4.081 15 H 0.089 0.911 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.110 4.110 19 C -0.101 4.101 20 C -0.064 4.064 21 H 0.117 0.883 22 C 0.485 3.515 23 O -0.546 6.546 24 O -0.503 6.503 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.269 0.731 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.068 -9.769 10.393 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.330 5.330 3 C 0.095 3.905 4 C -0.568 4.568 5 H 0.055 0.945 6 C -0.170 4.170 7 N -0.573 5.573 8 Si 0.753 3.247 9 H -0.192 1.192 10 H -0.170 1.170 11 H -0.205 1.205 12 C 0.319 3.681 13 O -0.487 6.487 14 C -0.102 4.102 15 H 0.107 0.893 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.084 4.084 21 H 0.135 0.865 22 C 0.329 3.671 23 O -0.436 6.436 24 O -0.316 6.316 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 5.800 -9.923 9.968 15.214 hybrid contribution -0.664 1.105 0.563 1.407 sum 5.137 -8.818 10.531 14.664 Atomic orbital electron populations 1.21565 0.79592 1.02732 1.01113 1.47833 1.07288 1.07086 1.70767 1.19694 0.92764 0.81726 0.96302 1.21353 1.36158 1.07136 0.92164 0.94491 1.25588 0.94991 0.98654 0.97794 1.70018 1.40240 1.25863 1.21215 0.85975 0.78526 0.79676 0.80498 1.19215 1.17032 1.20456 1.20701 0.90817 0.82680 0.73926 1.90531 1.71455 1.32316 1.54380 1.21113 0.90851 0.99144 0.99101 0.89309 1.21496 0.97413 1.02535 0.93116 1.21517 0.92939 0.99315 1.01394 1.21563 1.01610 0.97840 0.93752 1.21590 0.88624 1.04235 0.99426 1.21034 0.99286 1.00239 0.87803 0.86517 1.23652 0.76869 0.78477 0.88101 1.90727 1.36976 1.36508 1.79374 1.84465 1.70807 1.48191 1.28180 0.93794 0.91968 0.89506 0.94294 0.94156 0.92226 0.92172 0.91611 0.92219 0.90818 0.88701 0.90661 0.91214 0.87867 0.71392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.62 10.39 127.77 1.33 4.95 16 2 N -0.60 -27.02 2.87 -851.11 -2.44 -29.46 16 3 C 0.22 10.05 4.07 85.63 0.35 10.39 16 4 C -0.53 -28.33 8.14 25.60 0.21 -28.12 16 5 H 0.04 2.26 7.60 -2.91 -0.02 2.24 16 6 C 0.03 1.58 5.47 84.66 0.46 2.04 16 7 N -0.93 -54.33 13.96 21.45 0.30 -54.03 16 8 Si 0.93 40.49 27.47 68.60 1.88 42.37 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.25 -10.02 6.54 99.48 0.65 -9.37 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 C 0.53 23.48 4.86 87.66 0.43 23.91 16 13 O -0.60 -28.69 15.82 -3.07 -0.05 -28.74 16 14 C -0.08 -3.04 1.15 -11.54 -0.01 -3.05 16 15 H 0.09 3.54 5.79 -2.39 -0.01 3.53 16 16 C -0.11 -3.93 5.18 30.59 0.16 -3.77 16 17 C -0.11 -3.20 5.92 30.59 0.18 -3.02 16 18 C -0.11 -2.24 5.92 30.60 0.18 -2.06 16 19 C -0.10 -2.18 5.14 30.62 0.16 -2.02 16 20 C -0.06 -1.91 1.85 -11.52 -0.02 -1.93 16 21 H 0.12 3.48 7.85 -2.38 -0.02 3.46 16 22 C 0.49 14.93 7.23 71.24 0.51 15.44 16 23 O -0.55 -20.89 15.55 21.95 0.34 -20.55 16 24 O -0.50 -10.96 13.33 -51.39 -0.68 -11.64 16 25 H 0.04 1.72 8.14 -2.38 -0.02 1.71 16 26 H 0.06 2.36 7.64 -2.39 -0.02 2.34 16 27 H 0.09 2.93 7.79 -2.38 -0.02 2.91 16 28 H 0.04 1.79 4.99 -2.38 -0.01 1.78 16 29 H 0.04 1.78 7.21 -2.39 -0.02 1.76 16 30 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 2.99 5.74 -2.38 -0.01 2.98 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.71 8.11 -2.39 -0.02 1.69 16 39 H 0.42 5.59 9.10 -74.06 -0.67 4.92 16 Total: -1.00 -70.84 312.18 3.61 -67.23 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.33 Total: 22.06 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 3.93 Total: 12.76 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.15 Total: -83.50 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -0.39 Total: -60.92 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 1.88 Total: 42.37 kcal Total: -70.84 3.61 -67.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016007463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.804 kcal (2) G-P(sol) polarization free energy of solvation -70.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds