Wall clock time and date at job start Mon Mar 30 2020 05:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99526 * 2 1 4 4 C 1.52998 * 109.46910 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47762 * 305.00365 * 4 3 2 6 6 O 1.42906 * 109.46934 * 65.00718 * 4 3 2 7 7 C 1.53005 * 109.47015 * 185.00093 * 4 3 2 8 8 N 1.46908 * 109.46958 * 180.02562 * 7 4 3 9 9 C 1.46893 * 110.99799 * 170.00028 * 8 7 4 10 10 C 1.50695 * 109.47331 * 285.72245 * 9 8 7 11 11 H 1.08000 * 120.00281 * 4.62375 * 10 9 8 12 12 C 1.37881 * 120.00241 * 184.62570 * 10 9 8 13 13 N 1.31518 * 119.99793 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00170 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46959 * 60.00263 * 14 12 10 16 16 H 1.48498 * 109.47018 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47417 * 300.00440 * 14 12 10 18 18 C 1.46896 * 110.99655 * 293.95436 * 8 7 4 19 19 C 1.50702 * 109.47136 * 164.43330 * 18 8 7 20 20 C 1.34512 * 125.78767 * 95.66078 * 19 18 8 21 21 C 1.41390 * 106.83977 * 180.02562 * 20 19 18 22 22 C 1.34517 * 106.83877 * 359.97438 * 21 20 19 23 23 O 1.34298 * 125.79048 * 275.35821 * 19 18 8 24 24 H 1.09001 * 109.47550 * 60.00099 * 1 2 3 25 25 H 1.08997 * 109.47284 * 299.99436 * 1 2 3 26 26 H 1.09003 * 109.46650 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47456 * 300.00122 * 3 2 1 28 28 H 1.09001 * 109.46979 * 60.00038 * 3 2 1 29 29 H 0.96695 * 113.99996 * 59.99791 * 6 4 3 30 30 H 1.08995 * 109.47138 * 299.99907 * 7 4 3 31 31 H 1.08999 * 109.47202 * 60.00466 * 7 4 3 32 32 H 1.09008 * 109.47134 * 45.72370 * 9 8 7 33 33 H 1.09000 * 109.46977 * 165.72190 * 9 8 7 34 34 H 0.97000 * 120.00020 * 179.97438 * 13 12 10 35 35 H 1.09010 * 109.47431 * 284.42984 * 18 8 7 36 36 H 1.08997 * 109.47543 * 44.43317 * 18 8 7 37 37 H 1.08001 * 126.58315 * 359.97279 * 20 19 18 38 38 H 1.08000 * 126.58226 * 179.97438 * 21 20 19 39 39 H 1.07994 * 125.78677 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.8508 0.5686 0.8426 6 8 3.9657 0.5795 -1.2202 7 6 4.1571 2.5771 0.1264 8 7 5.6216 2.4612 0.1264 9 6 6.2541 3.7816 0.0069 10 6 6.1135 4.2798 -1.4084 11 1 5.5413 3.7114 -2.1266 12 6 6.7155 5.4612 -1.7865 13 7 7.4128 6.1531 -0.9120 14 14 6.5419 6.0783 -3.5410 15 1 5.1054 6.2926 -3.8504 16 1 7.2774 7.3597 -3.6901 17 1 7.1053 5.0728 -4.4775 18 6 6.0939 1.7578 1.3264 19 6 7.5217 1.3206 1.1230 20 6 8.6150 1.9901 1.5303 21 6 9.7355 1.2246 1.1333 22 6 9.2599 0.1330 0.5077 23 8 7.9182 0.1937 0.5095 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 -0.8899 28 1 1.6884 1.8464 0.8900 29 1 3.7190 1.0749 -2.0132 30 1 3.8418 3.1932 -0.7156 31 1 3.8288 3.0389 1.0576 32 1 5.7681 4.4803 0.6880 33 1 7.3111 3.7024 0.2609 34 1 7.8367 6.9841 -1.1780 35 1 6.0376 2.4266 2.1854 36 1 5.4681 0.8835 1.5050 37 1 8.6334 2.9320 2.0584 38 1 10.7741 1.4695 1.3003 39 1 9.8557 -0.6601 0.0806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033630202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:57 Heat of formation + Delta-G solvation = -70.647814 kcal Electronic energy + Delta-G solvation = -21095.708906 eV Core-core repulsion = 17812.797134 eV Total energy + Delta-G solvation = -3282.911772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.93640 -38.59079 -37.10537 -35.40233 -32.62667 -32.37217 -30.71886 -29.64876 -27.45447 -26.59086 -25.10241 -23.80286 -21.55413 -21.14248 -20.68264 -19.58930 -16.89907 -16.82053 -16.35163 -16.17187 -15.93142 -15.44558 -15.11336 -14.65600 -14.43280 -14.02241 -13.71044 -13.50742 -13.05249 -12.67666 -12.24943 -12.15680 -12.10428 -12.01899 -11.59208 -11.38615 -11.18993 -11.00415 -10.75847 -10.65628 -10.32318 -9.97052 -9.72306 -9.47933 -9.30453 -9.23310 -8.42214 -7.89700 -7.32842 -6.02688 -4.03465 2.30802 3.17843 3.32202 3.37051 3.40139 3.58940 3.67299 4.42027 4.74171 4.90958 5.12417 5.14269 5.25646 5.27570 5.33126 5.37006 5.47659 5.51105 5.56616 5.57390 5.58495 5.75173 5.86480 5.89619 6.19227 6.35374 6.46530 6.49179 6.65081 7.05905 7.08992 7.18253 7.25403 7.71689 7.79304 8.03306 8.12721 8.18365 8.48624 9.02260 9.59878 11.07992 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.007211 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.614513 B = 3882.165416 C = 5879.493555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.029 3.971 4 C 0.112 3.888 5 H 0.098 0.902 6 O -0.537 6.537 7 C 0.036 3.964 8 N -0.519 5.519 9 C 0.187 3.813 10 C -0.503 4.503 11 H 0.061 0.939 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.897 3.103 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.126 3.874 19 C 0.023 3.977 20 C -0.208 4.208 21 C -0.212 4.212 22 C -0.056 4.056 23 O -0.167 6.167 24 H 0.039 0.961 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.371 0.629 30 H 0.091 0.909 31 H 0.032 0.968 32 H -0.011 1.011 33 H 0.045 0.955 34 H 0.261 0.739 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 -9.407 4.688 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.049 4.049 4 C 0.052 3.948 5 H 0.116 0.884 6 O -0.341 6.341 7 C -0.093 4.093 8 N -0.243 5.243 9 C 0.063 3.937 10 C -0.542 4.542 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.725 3.275 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.002 4.002 19 C -0.028 4.028 20 C -0.228 4.228 21 C -0.231 4.231 22 C -0.124 4.124 23 O -0.062 6.062 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.217 0.783 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.006 0.994 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.564 -10.329 4.585 13.069 hybrid contribution -0.404 1.897 -0.564 2.020 sum -6.968 -8.432 4.022 11.655 Atomic orbital electron populations 1.22735 0.81662 1.02487 0.99759 1.87959 1.19080 1.27671 1.95342 1.23371 0.95828 0.84887 1.00803 1.21967 0.88773 0.94832 0.89210 0.88442 1.86606 1.81179 1.51559 1.14789 1.22590 0.89737 0.95289 1.01685 1.61981 1.03846 1.23802 1.34718 1.19897 0.95269 0.81500 0.97079 1.21062 1.32084 1.05375 0.95682 0.92036 1.24964 0.95301 0.96798 0.97453 1.69940 1.33969 1.15591 1.34264 0.86583 0.78039 0.77956 0.84947 1.20383 1.21392 1.20161 1.20485 0.88130 0.98318 0.93258 1.22224 0.96517 0.86306 0.97792 1.21543 0.91555 1.01894 1.07802 1.21716 0.99824 0.96519 1.05086 1.23833 0.81077 1.01913 1.05572 1.84018 1.22575 1.38560 1.61089 0.94221 0.94340 0.89828 0.92802 0.92700 0.78268 0.89085 0.95026 0.99363 0.93746 0.92913 0.92626 0.90256 0.83916 0.84140 0.78848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.33 10.67 -40.08 -0.43 -5.76 16 3 C 0.03 0.37 5.57 37.16 0.21 0.58 16 4 C 0.11 1.75 3.16 -26.73 -0.08 1.67 16 5 H 0.10 1.55 6.29 -51.93 -0.33 1.22 16 6 O -0.54 -9.43 13.17 -40.08 -0.53 -9.96 16 7 C 0.04 0.63 4.46 -3.82 -0.02 0.61 16 8 N -0.52 -10.95 4.25 -237.51 -1.01 -11.96 16 9 C 0.19 4.75 4.58 -4.98 -0.02 4.73 16 10 C -0.50 -13.90 8.57 -34.44 -0.30 -14.19 16 11 H 0.06 1.67 7.57 -52.49 -0.40 1.28 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 14 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.13 2.34 5.37 -4.98 -0.03 2.31 16 19 C 0.02 0.45 6.29 -35.62 -0.22 0.22 16 20 C -0.21 -3.98 9.52 -39.70 -0.38 -4.36 16 21 C -0.21 -3.61 10.91 -39.70 -0.43 -4.04 16 22 C -0.06 -0.91 12.09 29.42 0.36 -0.56 16 23 O -0.17 -3.26 10.65 5.72 0.06 -3.20 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.37 5.53 9.04 45.56 0.41 5.94 16 30 H 0.09 1.70 7.20 -51.93 -0.37 1.33 16 31 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 32 H -0.01 -0.30 8.02 -51.92 -0.42 -0.72 16 33 H 0.04 1.22 6.14 -51.93 -0.32 0.91 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 0.96 8.06 -51.92 -0.42 0.55 16 36 H 0.08 1.32 5.95 -51.93 -0.31 1.01 16 37 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 38 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 39 H 0.19 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -32.95 329.46 -6.21 -39.17 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.09 Total: 6.03 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 0.10 Total: -10.14 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.27 Total: -37.63 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.89 Total: -18.92 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.95 -6.21 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033630202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.481 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds