Wall clock time and date at job start Mon Mar 30 2020 05:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99526 * 2 1 4 4 C 1.52998 * 109.46910 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47762 * 305.00365 * 4 3 2 6 6 O 1.42906 * 109.46934 * 65.00718 * 4 3 2 7 7 C 1.53005 * 109.47015 * 185.00093 * 4 3 2 8 8 N 1.46908 * 109.46958 * 180.02562 * 7 4 3 9 9 C 1.46893 * 110.99799 * 170.00028 * 8 7 4 10 10 C 1.50695 * 109.47331 * 285.72245 * 9 8 7 11 11 H 1.08000 * 120.00281 * 4.62375 * 10 9 8 12 12 C 1.37881 * 120.00241 * 184.62570 * 10 9 8 13 13 N 1.31518 * 119.99793 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00170 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46959 * 60.00263 * 14 12 10 16 16 H 1.48498 * 109.47018 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47417 * 300.00440 * 14 12 10 18 18 C 1.46896 * 110.99655 * 293.95436 * 8 7 4 19 19 C 1.50702 * 109.47136 * 164.43330 * 18 8 7 20 20 C 1.34512 * 125.78767 * 95.66078 * 19 18 8 21 21 C 1.41390 * 106.83977 * 180.02562 * 20 19 18 22 22 C 1.34517 * 106.83877 * 359.97438 * 21 20 19 23 23 O 1.34298 * 125.79048 * 275.35821 * 19 18 8 24 24 H 1.09001 * 109.47550 * 60.00099 * 1 2 3 25 25 H 1.08997 * 109.47284 * 299.99436 * 1 2 3 26 26 H 1.09003 * 109.46650 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47456 * 300.00122 * 3 2 1 28 28 H 1.09001 * 109.46979 * 60.00038 * 3 2 1 29 29 H 0.96695 * 113.99996 * 59.99791 * 6 4 3 30 30 H 1.08995 * 109.47138 * 299.99907 * 7 4 3 31 31 H 1.08999 * 109.47202 * 60.00466 * 7 4 3 32 32 H 1.09008 * 109.47134 * 45.72370 * 9 8 7 33 33 H 1.09000 * 109.46977 * 165.72190 * 9 8 7 34 34 H 0.97000 * 120.00020 * 179.97438 * 13 12 10 35 35 H 1.09010 * 109.47431 * 284.42984 * 18 8 7 36 36 H 1.08997 * 109.47543 * 44.43317 * 18 8 7 37 37 H 1.08001 * 126.58315 * 359.97279 * 20 19 18 38 38 H 1.08000 * 126.58226 * 179.97438 * 21 20 19 39 39 H 1.07994 * 125.78677 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.8508 0.5686 0.8426 6 8 3.9657 0.5795 -1.2202 7 6 4.1571 2.5771 0.1264 8 7 5.6216 2.4612 0.1264 9 6 6.2541 3.7816 0.0069 10 6 6.1135 4.2798 -1.4084 11 1 5.5413 3.7114 -2.1266 12 6 6.7155 5.4612 -1.7865 13 7 7.4128 6.1531 -0.9120 14 14 6.5419 6.0783 -3.5410 15 1 5.1054 6.2926 -3.8504 16 1 7.2774 7.3597 -3.6901 17 1 7.1053 5.0728 -4.4775 18 6 6.0939 1.7578 1.3264 19 6 7.5217 1.3206 1.1230 20 6 8.6150 1.9901 1.5303 21 6 9.7355 1.2246 1.1333 22 6 9.2599 0.1330 0.5077 23 8 7.9182 0.1937 0.5095 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 -0.8899 28 1 1.6884 1.8464 0.8900 29 1 3.7190 1.0749 -2.0132 30 1 3.8418 3.1932 -0.7156 31 1 3.8288 3.0389 1.0576 32 1 5.7681 4.4803 0.6880 33 1 7.3111 3.7024 0.2609 34 1 7.8367 6.9841 -1.1780 35 1 6.0376 2.4266 2.1854 36 1 5.4681 0.8835 1.5050 37 1 8.6334 2.9320 2.0584 38 1 10.7741 1.4695 1.3003 39 1 9.8557 -0.6601 0.0806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033630202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:57 Heat of formation + Delta-G solvation = -95.953671 kcal Electronic energy + Delta-G solvation = -21096.806250 eV Core-core repulsion = 17812.797134 eV Total energy + Delta-G solvation = -3284.009116 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.34926 -39.83637 -38.37659 -36.81549 -34.69512 -33.80531 -32.03824 -31.14646 -29.09887 -27.74893 -26.37102 -25.47223 -23.06604 -22.53655 -22.18819 -21.05859 -18.57398 -18.27344 -17.86275 -17.33958 -16.99455 -16.86747 -16.72231 -16.06101 -15.88606 -15.45543 -15.16582 -14.85410 -14.54876 -14.08249 -13.96466 -13.68188 -13.43245 -13.28906 -13.02305 -12.76193 -12.74644 -12.53095 -12.43554 -12.34735 -11.93214 -11.64945 -11.25808 -10.84010 -10.74011 -10.62935 -10.52675 -9.31951 -9.00362 -8.16625 -6.25257 0.89949 1.41002 1.44459 1.51593 1.77869 2.24579 2.41511 2.64234 3.15974 3.39493 3.67815 3.92254 3.95296 4.04905 4.19413 4.20976 4.26758 4.41319 4.43636 4.48111 4.50321 4.58423 4.59519 4.79736 4.86405 5.00501 5.06235 5.09286 5.17312 5.26483 5.34622 5.65500 5.70465 6.07539 6.19525 6.30931 6.40076 6.55337 6.88068 6.96080 7.42992 8.93602 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.007211 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.614513 B = 3882.165416 C = 5879.493555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.036 3.964 4 C 0.121 3.879 5 H 0.095 0.905 6 O -0.559 6.559 7 C 0.038 3.962 8 N -0.530 5.530 9 C 0.204 3.796 10 C -0.517 4.517 11 H 0.061 0.939 12 C 0.004 3.996 13 N -0.933 5.933 14 Si 0.963 3.037 15 H -0.264 1.264 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.127 3.873 19 C -0.004 4.004 20 C -0.225 4.225 21 C -0.227 4.227 22 C -0.046 4.046 23 O -0.185 6.185 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.380 0.620 30 H 0.078 0.922 31 H 0.045 0.955 32 H -0.034 1.034 33 H 0.017 0.983 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.135 0.865 38 H 0.166 0.834 39 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 -10.295 3.927 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C -0.042 4.042 4 C 0.061 3.939 5 H 0.113 0.887 6 O -0.364 6.364 7 C -0.090 4.090 8 N -0.255 5.255 9 C 0.078 3.922 10 C -0.555 4.555 11 H 0.080 0.920 12 C -0.194 4.194 13 N -0.573 5.573 14 Si 0.788 3.212 15 H -0.189 1.189 16 H -0.211 1.211 17 H -0.200 1.200 18 C 0.000 4.000 19 C -0.054 4.054 20 C -0.245 4.245 21 C -0.246 4.246 22 C -0.113 4.113 23 O -0.081 6.081 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.228 0.772 30 H 0.096 0.904 31 H 0.063 0.937 32 H -0.016 1.016 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.153 0.847 38 H 0.184 0.816 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.379 -11.230 3.829 13.972 hybrid contribution -0.143 2.110 -0.284 2.134 sum -7.522 -9.119 3.545 12.341 Atomic orbital electron populations 1.22950 0.79559 1.03792 1.00882 1.87904 1.21387 1.27977 1.95589 1.23219 0.93700 0.85076 1.02162 1.21865 0.90661 0.92898 0.88472 0.88744 1.86563 1.81778 1.52322 1.15780 1.22601 0.87758 0.96845 1.01781 1.61855 1.05778 1.21290 1.36559 1.19499 0.93844 0.83224 0.95600 1.21396 1.31865 1.05584 0.96660 0.92046 1.25826 0.94926 0.97025 1.01645 1.70072 1.34926 1.16018 1.36330 0.85528 0.78682 0.77238 0.79706 1.18866 1.21087 1.19956 1.20543 0.88270 0.98773 0.92446 1.22404 0.97064 0.86974 0.99001 1.21747 0.92807 1.01923 1.07993 1.22070 1.00554 0.96556 1.05397 1.24757 0.80090 1.02523 1.03953 1.84007 1.24269 1.38504 1.61350 0.93315 0.92953 0.88554 0.91828 0.90931 0.77250 0.90352 0.93681 1.01595 0.96490 0.92881 0.91912 0.88338 0.84669 0.81624 0.74361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -10.65 10.67 -144.34 -1.54 -12.19 16 3 C 0.04 0.86 5.57 71.98 0.40 1.27 16 4 C 0.12 3.64 3.16 30.60 0.10 3.74 16 5 H 0.09 2.90 6.29 -2.39 -0.02 2.88 16 6 O -0.56 -19.22 13.17 -144.34 -1.90 -21.13 16 7 C 0.04 1.34 4.46 86.30 0.38 1.72 16 8 N -0.53 -22.64 4.25 -905.35 -3.85 -26.48 16 9 C 0.20 10.67 4.58 85.56 0.39 11.06 16 10 C -0.52 -28.90 8.57 25.60 0.22 -28.68 16 11 H 0.06 3.36 7.57 -2.91 -0.02 3.33 16 12 C 0.00 0.21 5.46 84.66 0.46 0.67 16 13 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 14 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 15 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 16 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 C 0.13 4.76 5.37 85.56 0.46 5.22 16 19 C 0.00 -0.15 6.29 24.83 0.16 0.01 16 20 C -0.22 -8.77 9.52 22.19 0.21 -8.56 16 21 C -0.23 -7.50 10.91 22.19 0.24 -7.26 16 22 C -0.05 -1.42 12.09 66.97 0.81 -0.62 16 23 O -0.19 -7.12 10.65 -2.44 -0.03 -7.14 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.38 11.11 9.04 -74.06 -0.67 10.44 16 30 H 0.08 2.92 7.20 -2.39 -0.02 2.90 16 31 H 0.05 1.45 8.12 -2.39 -0.02 1.43 16 32 H -0.03 -1.86 8.02 -2.38 -0.02 -1.88 16 33 H 0.02 0.98 6.14 -2.39 -0.01 0.96 16 34 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.06 2.22 8.06 -2.38 -0.02 2.20 16 36 H 0.10 3.25 5.95 -2.39 -0.01 3.23 16 37 H 0.14 5.33 8.06 -2.91 -0.02 5.30 16 38 H 0.17 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.24 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -71.17 329.46 0.45 -70.72 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.37 Total: 25.31 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 5.08 Total: -19.76 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -3.56 Total: -81.99 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -3.47 Total: -40.46 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -71.17 0.45 -70.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033630202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.234 kcal (2) G-P(sol) polarization free energy of solvation -71.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds