Wall clock time and date at job start Mon Mar 30 2020 05:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00272 * 2 1 4 4 C 1.50706 * 109.46738 * 269.99450 * 3 2 1 5 5 H 1.08001 * 119.99904 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99849 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99885 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99992 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47046 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47155 * 119.99804 * 8 6 4 11 11 H 1.48495 * 109.46998 * 240.00262 * 8 6 4 12 12 C 1.34779 * 119.99820 * 179.97438 * 2 1 3 13 13 O 1.21286 * 120.00032 * 180.02562 * 12 2 1 14 14 C 1.50701 * 120.00252 * 0.02562 * 12 2 1 15 15 C 1.53003 * 109.47314 * 182.83431 * 14 12 2 16 16 C 1.50700 * 110.05459 * 56.93448 * 15 14 12 17 17 O 1.20829 * 119.99509 * 232.71539 * 16 15 14 18 18 O 1.34225 * 120.00068 * 52.71550 * 16 15 14 19 19 C 1.54258 * 110.02955 * 295.51607 * 15 14 12 20 20 C 1.54892 * 104.19719 * 264.32335 * 19 15 14 21 21 C 1.54882 * 102.74924 * 322.05942 * 20 19 15 22 22 C 1.53870 * 110.03020 * 178.34958 * 15 14 12 23 23 H 1.08998 * 109.47552 * 270.00355 * 1 2 3 24 24 H 1.08999 * 109.46764 * 30.00863 * 1 2 3 25 25 H 1.09008 * 109.46731 * 150.00062 * 1 2 3 26 26 H 1.08993 * 109.47128 * 29.99058 * 3 2 1 27 27 H 1.08996 * 109.47488 * 149.99759 * 3 2 1 28 28 H 0.96997 * 119.99386 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.47111 * 62.82904 * 14 12 2 30 30 H 1.09003 * 109.46854 * 302.83660 * 14 12 2 31 31 H 0.96705 * 116.99495 * 179.97438 * 18 16 15 32 32 H 1.09000 * 110.48659 * 145.65028 * 19 15 14 33 33 H 1.09003 * 110.48922 * 23.00261 * 19 15 14 34 34 H 1.09004 * 110.75587 * 80.37712 * 20 19 15 35 35 H 1.09002 * 110.75845 * 203.74442 * 20 19 15 36 36 H 1.09000 * 110.48819 * 156.61755 * 21 20 19 37 37 H 1.08997 * 110.48880 * 279.26180 * 21 20 19 38 38 H 1.08996 * 110.03834 * 359.97438 * 22 15 14 39 39 H 1.09001 * 110.03202 * 238.56578 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0975 1.0959 -2.2417 6 6 3.1262 2.8777 -1.6729 7 7 3.5526 3.6184 -0.6733 8 14 3.4370 3.4172 -3.4341 9 1 2.8602 2.4165 -4.3674 10 1 2.7990 4.7377 -3.6673 11 1 4.8995 3.5258 -3.6677 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3854 -2.4724 0.0005 15 6 2.3780 -3.6344 0.0725 16 6 3.2489 -3.4953 1.2945 17 8 4.4518 -3.5312 1.1864 18 8 2.6882 -3.3315 2.5030 19 6 3.2516 -3.6625 -1.1986 20 6 2.5420 -4.6811 -2.1248 21 6 2.0601 -5.7679 -1.1321 22 6 1.6203 -4.9730 0.1148 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3633 -0.8901 -0.5139 26 1 1.6085 2.0283 0.5137 27 1 3.1499 1.1384 0.5138 28 1 4.0288 4.4446 -0.8507 29 1 0.7977 -2.5526 -0.9139 30 1 0.7208 -2.5082 0.8638 31 1 3.2876 -3.2471 3.2572 32 1 4.2601 -4.0012 -0.9609 33 1 3.2789 -2.6776 -1.6647 34 1 1.6953 -4.2179 -2.6315 35 1 3.2429 -5.1007 -2.8465 36 1 1.2177 -6.3194 -1.5495 37 1 2.8760 -6.4465 -0.8837 38 1 0.5455 -4.7948 0.0846 39 1 1.8825 -5.5220 1.0192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035083149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:11 Heat of formation + Delta-G solvation = -139.756368 kcal Electronic energy + Delta-G solvation = -21843.429483 eV Core-core repulsion = 18557.520940 eV Total energy + Delta-G solvation = -3285.908544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.78728 -38.80142 -37.48360 -35.73921 -34.80395 -32.66659 -31.51499 -28.77802 -28.11549 -26.49636 -25.38384 -23.15891 -22.62918 -20.85269 -19.36000 -18.36169 -17.47247 -16.70406 -16.51484 -16.34023 -15.44985 -15.15965 -15.07516 -14.44630 -14.38474 -13.97044 -13.37749 -12.99006 -12.66215 -12.45207 -12.19608 -11.94699 -11.85053 -11.67118 -11.28692 -11.22519 -11.17376 -11.04867 -10.96249 -10.82678 -10.72860 -10.57852 -10.44500 -10.14950 -9.98511 -9.60412 -8.86426 -8.43550 -7.63779 -6.04039 -4.08774 2.59897 3.24667 3.29850 3.36617 3.39316 3.44359 3.91615 4.41381 4.47803 4.54276 4.74438 5.09935 5.17565 5.23650 5.30856 5.45539 5.46993 5.52021 5.61383 5.71508 5.74129 5.79572 5.83039 5.88909 5.95854 6.08182 6.19675 6.22065 6.44378 6.56459 6.81547 7.04712 7.44811 7.53899 7.92243 8.22596 8.23547 8.40580 8.90155 9.08108 9.56370 11.04176 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022690 B = 0.005561 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.753150 B = 5033.921161 C = 5306.438028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.601 5.601 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.497 3.503 13 O -0.531 6.531 14 C -0.130 4.130 15 C -0.031 4.031 16 C 0.497 3.503 17 O -0.500 6.500 18 O -0.522 6.522 19 C -0.108 4.108 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.111 4.111 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.405 0.595 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 -16.729 2.224 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.334 5.334 3 C 0.126 3.874 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.283 3.717 13 O -0.408 6.408 14 C -0.170 4.170 15 C -0.033 4.033 16 C 0.338 3.662 17 O -0.386 6.386 18 O -0.334 6.334 19 C -0.145 4.145 20 C -0.164 4.164 21 C -0.162 4.162 22 C -0.149 4.149 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.263 0.737 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.763 -16.571 1.901 18.398 hybrid contribution 0.471 0.669 -0.369 0.897 sum -7.292 -15.902 1.533 17.561 Atomic orbital electron populations 1.21650 0.81472 1.02568 1.00455 1.48141 1.06150 1.07820 1.71241 1.19287 0.92530 0.78077 0.97534 1.21456 1.36418 1.06215 0.92260 0.92431 1.24945 0.95365 0.96420 0.97433 1.69945 1.38466 1.14301 1.30676 0.86443 0.78115 0.78284 0.84582 1.19804 1.20964 1.20865 1.20317 0.88318 0.85195 0.77889 1.90755 1.13475 1.86920 1.49691 1.21897 0.98339 0.92086 1.04702 1.20880 0.94829 0.96185 0.91404 1.23012 0.87874 0.71414 0.83905 1.90658 1.16429 1.45466 1.86057 1.84486 1.45765 1.85111 1.18044 1.22501 0.98967 1.01081 0.91944 1.22563 1.00232 0.96149 0.97499 1.22380 1.00841 0.97721 0.95217 1.22225 1.00245 0.93250 0.99133 0.93695 0.90744 0.92454 0.95067 0.93903 0.92776 0.88080 0.88506 0.73720 0.89596 0.89436 0.91296 0.91146 0.91277 0.91510 0.90166 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.19 59.85 0.61 1.89 16 2 N -0.60 -12.73 2.86 -182.95 -0.52 -13.26 16 3 C 0.24 6.48 5.16 -5.19 -0.03 6.46 16 4 C -0.52 -14.98 9.39 -34.44 -0.32 -15.31 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.50 10.21 6.82 -10.98 -0.07 10.14 16 13 O -0.53 -13.29 12.62 -0.31 0.00 -13.30 16 14 C -0.13 -1.88 2.89 -27.88 -0.08 -1.96 16 15 C -0.03 -0.45 0.59 -154.55 -0.09 -0.54 16 16 C 0.50 8.31 4.93 36.01 0.18 8.49 16 17 O -0.50 -10.13 15.93 -22.09 -0.35 -10.48 16 18 O -0.52 -7.14 13.20 -39.24 -0.52 -7.66 16 19 C -0.11 -1.67 5.03 -25.08 -0.13 -1.80 16 20 C -0.13 -1.43 6.91 -24.74 -0.17 -1.60 16 21 C -0.12 -1.18 6.83 -25.07 -0.17 -1.35 16 22 C -0.11 -1.15 6.10 -25.61 -0.16 -1.31 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 25 H 0.06 0.70 6.52 -51.92 -0.34 0.36 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 27 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.10 1.23 7.55 -51.93 -0.39 0.84 16 30 H 0.10 1.20 8.00 -51.93 -0.42 0.78 16 31 H 0.40 4.03 9.10 45.56 0.41 4.44 16 32 H 0.09 1.48 6.81 -51.93 -0.35 1.12 16 33 H 0.09 1.62 6.34 -51.93 -0.33 1.29 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.68 7.67 -51.93 -0.40 0.28 16 39 H 0.07 0.69 7.67 -51.93 -0.40 0.30 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -35.99 319.10 -6.50 -42.49 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.09 Total: 1.81 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -0.53 Total: 4.75 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.21 Total: -39.46 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.87 Total: -31.44 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.99 -6.50 -42.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035083149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.267 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds