Wall clock time and date at job start Mon Mar 30 2020 05:00:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46497 * 120.00272 * 2 1
4 4 C 1.50706 * 109.46738 * 269.99450 * 3 2 1
5 5 H 1.08001 * 119.99904 * 0.02562 * 4 3 2
6 6 C 1.37879 * 119.99849 * 179.97438 * 4 3 2
7 7 N 1.31516 * 119.99885 * 359.97438 * 6 4 3
8 8 Si 1.86800 * 119.99992 * 180.02562 * 6 4 3
9 9 H 1.48503 * 109.47046 * 359.97438 * 8 6 4
10 10 H 1.48500 * 109.47155 * 119.99804 * 8 6 4
11 11 H 1.48495 * 109.46998 * 240.00262 * 8 6 4
12 12 C 1.34779 * 119.99820 * 179.97438 * 2 1 3
13 13 O 1.21286 * 120.00032 * 180.02562 * 12 2 1
14 14 C 1.50701 * 120.00252 * 0.02562 * 12 2 1
15 15 C 1.53003 * 109.47314 * 182.83431 * 14 12 2
16 16 C 1.50700 * 110.05459 * 56.93448 * 15 14 12
17 17 O 1.20829 * 119.99509 * 232.71539 * 16 15 14
18 18 O 1.34225 * 120.00068 * 52.71550 * 16 15 14
19 19 C 1.54258 * 110.02955 * 295.51607 * 15 14 12
20 20 C 1.54892 * 104.19719 * 264.32335 * 19 15 14
21 21 C 1.54882 * 102.74924 * 322.05942 * 20 19 15
22 22 C 1.53870 * 110.03020 * 178.34958 * 15 14 12
23 23 H 1.08998 * 109.47552 * 270.00355 * 1 2 3
24 24 H 1.08999 * 109.46764 * 30.00863 * 1 2 3
25 25 H 1.09008 * 109.46731 * 150.00062 * 1 2 3
26 26 H 1.08993 * 109.47128 * 29.99058 * 3 2 1
27 27 H 1.08996 * 109.47488 * 149.99759 * 3 2 1
28 28 H 0.96997 * 119.99386 * 180.02562 * 7 6 4
29 29 H 1.08993 * 109.47111 * 62.82904 * 14 12 2
30 30 H 1.09003 * 109.46854 * 302.83660 * 14 12 2
31 31 H 0.96705 * 116.99495 * 179.97438 * 18 16 15
32 32 H 1.09000 * 110.48659 * 145.65028 * 19 15 14
33 33 H 1.09003 * 110.48922 * 23.00261 * 19 15 14
34 34 H 1.09004 * 110.75587 * 80.37712 * 20 19 15
35 35 H 1.09002 * 110.75845 * 203.74442 * 20 19 15
36 36 H 1.09000 * 110.48819 * 156.61755 * 21 20 19
37 37 H 1.08997 * 110.48880 * 279.26180 * 21 20 19
38 38 H 1.08996 * 110.03834 * 359.97438 * 22 15 14
39 39 H 1.09001 * 110.03202 * 238.56578 * 22 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4488 1.7036 -1.4209
5 1 2.0975 1.0959 -2.2417
6 6 3.1262 2.8777 -1.6729
7 7 3.5526 3.6184 -0.6733
8 14 3.4370 3.4172 -3.4341
9 1 2.8602 2.4165 -4.3674
10 1 2.7990 4.7377 -3.6673
11 1 4.8995 3.5258 -3.6677
12 6 2.1389 -1.1672 0.0005
13 8 3.3517 -1.1673 0.0010
14 6 1.3854 -2.4724 0.0005
15 6 2.3780 -3.6344 0.0725
16 6 3.2489 -3.4953 1.2945
17 8 4.4518 -3.5312 1.1864
18 8 2.6882 -3.3315 2.5030
19 6 3.2516 -3.6625 -1.1986
20 6 2.5420 -4.6811 -2.1248
21 6 2.0601 -5.7679 -1.1321
22 6 1.6203 -4.9730 0.1148
23 1 -0.3634 0.0001 1.0276
24 1 -0.3633 0.8899 -0.5140
25 1 -0.3633 -0.8901 -0.5139
26 1 1.6085 2.0283 0.5137
27 1 3.1499 1.1384 0.5138
28 1 4.0288 4.4446 -0.8507
29 1 0.7977 -2.5526 -0.9139
30 1 0.7208 -2.5082 0.8638
31 1 3.2876 -3.2471 3.2572
32 1 4.2601 -4.0012 -0.9609
33 1 3.2789 -2.6776 -1.6647
34 1 1.6953 -4.2179 -2.6315
35 1 3.2429 -5.1007 -2.8465
36 1 1.2177 -6.3194 -1.5495
37 1 2.8760 -6.4465 -0.8837
38 1 0.5455 -4.7948 0.0846
39 1 1.8825 -5.5220 1.0192
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000035083149.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:11
Heat of formation + Delta-G solvation = -139.756368 kcal
Electronic energy + Delta-G solvation = -21843.429483 eV
Core-core repulsion = 18557.520940 eV
Total energy + Delta-G solvation = -3285.908544 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.78728 -38.80142 -37.48360 -35.73921 -34.80395 -32.66659 -31.51499 -28.77802
-28.11549 -26.49636 -25.38384 -23.15891 -22.62918 -20.85269 -19.36000 -18.36169
-17.47247 -16.70406 -16.51484 -16.34023 -15.44985 -15.15965 -15.07516 -14.44630
-14.38474 -13.97044 -13.37749 -12.99006 -12.66215 -12.45207 -12.19608 -11.94699
-11.85053 -11.67118 -11.28692 -11.22519 -11.17376 -11.04867 -10.96249 -10.82678
-10.72860 -10.57852 -10.44500 -10.14950 -9.98511 -9.60412 -8.86426 -8.43550
-7.63779 -6.04039 -4.08774 2.59897 3.24667 3.29850 3.36617 3.39316
3.44359 3.91615 4.41381 4.47803 4.54276 4.74438 5.09935 5.17565
5.23650 5.30856 5.45539 5.46993 5.52021 5.61383 5.71508 5.74129
5.79572 5.83039 5.88909 5.95854 6.08182 6.19675 6.22065 6.44378
6.56459 6.81547 7.04712 7.44811 7.53899 7.92243 8.22596 8.23547
8.40580 8.90155 9.08108 9.56370 11.04176
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.022690 B = 0.005561 C = 0.005275
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1233.753150 B = 5033.921161 C = 5306.438028
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.083 3.917
2 N -0.601 5.601
3 C 0.245 3.755
4 C -0.525 4.525
5 H 0.057 0.943
6 C 0.060 3.940
7 N -0.895 5.895
8 Si 0.898 3.102
9 H -0.273 1.273
10 H -0.283 1.283
11 H -0.283 1.283
12 C 0.497 3.503
13 O -0.531 6.531
14 C -0.130 4.130
15 C -0.031 4.031
16 C 0.497 3.503
17 O -0.500 6.500
18 O -0.522 6.522
19 C -0.108 4.108
20 C -0.127 4.127
21 C -0.124 4.124
22 C -0.111 4.111
23 H 0.045 0.955
24 H 0.074 0.926
25 H 0.057 0.943
26 H 0.031 0.969
27 H 0.043 0.957
28 H 0.263 0.737
29 H 0.101 0.899
30 H 0.097 0.903
31 H 0.405 0.595
32 H 0.085 0.915
33 H 0.087 0.913
34 H 0.068 0.932
35 H 0.070 0.930
36 H 0.068 0.932
37 H 0.066 0.934
38 H 0.080 0.920
39 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.572 -16.729 2.224 18.929
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 N -0.334 5.334
3 C 0.126 3.874
4 C -0.563 4.563
5 H 0.076 0.924
6 C -0.142 4.142
7 N -0.534 5.534
8 Si 0.726 3.274
9 H -0.198 1.198
10 H -0.210 1.210
11 H -0.209 1.209
12 C 0.283 3.717
13 O -0.408 6.408
14 C -0.170 4.170
15 C -0.033 4.033
16 C 0.338 3.662
17 O -0.386 6.386
18 O -0.334 6.334
19 C -0.145 4.145
20 C -0.164 4.164
21 C -0.162 4.162
22 C -0.149 4.149
23 H 0.063 0.937
24 H 0.093 0.907
25 H 0.075 0.925
26 H 0.049 0.951
27 H 0.061 0.939
28 H 0.072 0.928
29 H 0.119 0.881
30 H 0.115 0.885
31 H 0.263 0.737
32 H 0.104 0.896
33 H 0.106 0.894
34 H 0.087 0.913
35 H 0.089 0.911
36 H 0.087 0.913
37 H 0.085 0.915
38 H 0.098 0.902
39 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -7.763 -16.571 1.901 18.398
hybrid contribution 0.471 0.669 -0.369 0.897
sum -7.292 -15.902 1.533 17.561
Atomic orbital electron populations
1.21650 0.81472 1.02568 1.00455 1.48141 1.06150 1.07820 1.71241
1.19287 0.92530 0.78077 0.97534 1.21456 1.36418 1.06215 0.92260
0.92431 1.24945 0.95365 0.96420 0.97433 1.69945 1.38466 1.14301
1.30676 0.86443 0.78115 0.78284 0.84582 1.19804 1.20964 1.20865
1.20317 0.88318 0.85195 0.77889 1.90755 1.13475 1.86920 1.49691
1.21897 0.98339 0.92086 1.04702 1.20880 0.94829 0.96185 0.91404
1.23012 0.87874 0.71414 0.83905 1.90658 1.16429 1.45466 1.86057
1.84486 1.45765 1.85111 1.18044 1.22501 0.98967 1.01081 0.91944
1.22563 1.00232 0.96149 0.97499 1.22380 1.00841 0.97721 0.95217
1.22225 1.00245 0.93250 0.99133 0.93695 0.90744 0.92454 0.95067
0.93903 0.92776 0.88080 0.88506 0.73720 0.89596 0.89436 0.91296
0.91146 0.91277 0.91510 0.90166 0.91264
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.28 10.19 59.85 0.61 1.89 16
2 N -0.60 -12.73 2.86 -182.95 -0.52 -13.26 16
3 C 0.24 6.48 5.16 -5.19 -0.03 6.46 16
4 C -0.52 -14.98 9.39 -34.44 -0.32 -15.31 16
5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16
6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
7 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16
8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16
9 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16
10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
12 C 0.50 10.21 6.82 -10.98 -0.07 10.14 16
13 O -0.53 -13.29 12.62 -0.31 0.00 -13.30 16
14 C -0.13 -1.88 2.89 -27.88 -0.08 -1.96 16
15 C -0.03 -0.45 0.59 -154.55 -0.09 -0.54 16
16 C 0.50 8.31 4.93 36.01 0.18 8.49 16
17 O -0.50 -10.13 15.93 -22.09 -0.35 -10.48 16
18 O -0.52 -7.14 13.20 -39.24 -0.52 -7.66 16
19 C -0.11 -1.67 5.03 -25.08 -0.13 -1.80 16
20 C -0.13 -1.43 6.91 -24.74 -0.17 -1.60 16
21 C -0.12 -1.18 6.83 -25.07 -0.17 -1.35 16
22 C -0.11 -1.15 6.10 -25.61 -0.16 -1.31 16
23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
24 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16
25 H 0.06 0.70 6.52 -51.92 -0.34 0.36 16
26 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16
27 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16
28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
29 H 0.10 1.23 7.55 -51.93 -0.39 0.84 16
30 H 0.10 1.20 8.00 -51.93 -0.42 0.78 16
31 H 0.40 4.03 9.10 45.56 0.41 4.44 16
32 H 0.09 1.48 6.81 -51.93 -0.35 1.12 16
33 H 0.09 1.62 6.34 -51.93 -0.33 1.29 16
34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16
37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.08 0.68 7.67 -51.93 -0.40 0.28 16
39 H 0.07 0.69 7.67 -51.93 -0.40 0.30 16
LS Contribution 319.10 15.07 4.81 4.81
Total: -1.00 -35.99 319.10 -6.50 -42.49
By element:
Atomic # 1 Polarization: 6.90 SS G_CDS: -5.09 Total: 1.81 kcal
Atomic # 6 Polarization: 5.28 SS G_CDS: -0.53 Total: 4.75 kcal
Atomic # 7 Polarization: -39.68 SS G_CDS: 0.21 Total: -39.46 kcal
Atomic # 8 Polarization: -30.57 SS G_CDS: -0.87 Total: -31.44 kcal
Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -35.99 -6.50 -42.49 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000035083149.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.267 kcal
(2) G-P(sol) polarization free energy of solvation -35.995 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.756 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds