Wall clock time and date at job start Mon Mar 30 2020 05:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00272 * 2 1 4 4 C 1.50706 * 109.46738 * 269.99450 * 3 2 1 5 5 H 1.08001 * 119.99904 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99849 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99885 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99992 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47046 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47155 * 119.99804 * 8 6 4 11 11 H 1.48495 * 109.46998 * 240.00262 * 8 6 4 12 12 C 1.34779 * 119.99820 * 179.97438 * 2 1 3 13 13 O 1.21286 * 120.00032 * 180.02562 * 12 2 1 14 14 C 1.50701 * 120.00252 * 0.02562 * 12 2 1 15 15 C 1.53003 * 109.47314 * 182.83431 * 14 12 2 16 16 C 1.50700 * 110.05459 * 56.93448 * 15 14 12 17 17 O 1.20829 * 119.99509 * 232.71539 * 16 15 14 18 18 O 1.34225 * 120.00068 * 52.71550 * 16 15 14 19 19 C 1.54258 * 110.02955 * 295.51607 * 15 14 12 20 20 C 1.54892 * 104.19719 * 264.32335 * 19 15 14 21 21 C 1.54882 * 102.74924 * 322.05942 * 20 19 15 22 22 C 1.53870 * 110.03020 * 178.34958 * 15 14 12 23 23 H 1.08998 * 109.47552 * 270.00355 * 1 2 3 24 24 H 1.08999 * 109.46764 * 30.00863 * 1 2 3 25 25 H 1.09008 * 109.46731 * 150.00062 * 1 2 3 26 26 H 1.08993 * 109.47128 * 29.99058 * 3 2 1 27 27 H 1.08996 * 109.47488 * 149.99759 * 3 2 1 28 28 H 0.96997 * 119.99386 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.47111 * 62.82904 * 14 12 2 30 30 H 1.09003 * 109.46854 * 302.83660 * 14 12 2 31 31 H 0.96705 * 116.99495 * 179.97438 * 18 16 15 32 32 H 1.09000 * 110.48659 * 145.65028 * 19 15 14 33 33 H 1.09003 * 110.48922 * 23.00261 * 19 15 14 34 34 H 1.09004 * 110.75587 * 80.37712 * 20 19 15 35 35 H 1.09002 * 110.75845 * 203.74442 * 20 19 15 36 36 H 1.09000 * 110.48819 * 156.61755 * 21 20 19 37 37 H 1.08997 * 110.48880 * 279.26180 * 21 20 19 38 38 H 1.08996 * 110.03834 * 359.97438 * 22 15 14 39 39 H 1.09001 * 110.03202 * 238.56578 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0975 1.0959 -2.2417 6 6 3.1262 2.8777 -1.6729 7 7 3.5526 3.6184 -0.6733 8 14 3.4370 3.4172 -3.4341 9 1 2.8602 2.4165 -4.3674 10 1 2.7990 4.7377 -3.6673 11 1 4.8995 3.5258 -3.6677 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3854 -2.4724 0.0005 15 6 2.3780 -3.6344 0.0725 16 6 3.2489 -3.4953 1.2945 17 8 4.4518 -3.5312 1.1864 18 8 2.6882 -3.3315 2.5030 19 6 3.2516 -3.6625 -1.1986 20 6 2.5420 -4.6811 -2.1248 21 6 2.0601 -5.7679 -1.1321 22 6 1.6203 -4.9730 0.1148 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3633 -0.8901 -0.5139 26 1 1.6085 2.0283 0.5137 27 1 3.1499 1.1384 0.5138 28 1 4.0288 4.4446 -0.8507 29 1 0.7977 -2.5526 -0.9139 30 1 0.7208 -2.5082 0.8638 31 1 3.2876 -3.2471 3.2572 32 1 4.2601 -4.0012 -0.9609 33 1 3.2789 -2.6776 -1.6647 34 1 1.6953 -4.2179 -2.6315 35 1 3.2429 -5.1007 -2.8465 36 1 1.2177 -6.3194 -1.5495 37 1 2.8760 -6.4465 -0.8837 38 1 0.5455 -4.7948 0.0846 39 1 1.8825 -5.5220 1.0192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035083149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:10 Heat of formation + Delta-G solvation = -165.431884 kcal Electronic energy + Delta-G solvation = -21844.542857 eV Core-core repulsion = 18557.520940 eV Total energy + Delta-G solvation = -3287.021918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.04540 -40.33150 -38.60801 -37.01411 -36.55590 -34.75854 -32.70069 -30.03169 -29.65015 -27.78710 -27.00785 -24.58019 -24.28386 -21.74687 -20.61847 -19.79323 -18.75496 -18.71005 -17.89013 -17.79579 -16.92196 -16.69158 -16.42289 -16.04495 -15.64943 -15.29503 -14.60333 -14.34935 -14.18691 -13.76948 -13.70737 -13.45807 -13.29571 -13.13644 -12.80128 -12.69258 -12.55563 -12.49368 -12.22572 -12.20546 -12.01292 -11.85658 -11.69333 -11.66987 -11.51315 -11.16278 -10.67378 -10.52470 -9.39827 -8.24462 -6.39463 1.33186 1.33865 1.36964 1.48434 1.85522 2.12595 2.31987 2.46708 3.05133 3.40849 3.50128 3.73619 3.89635 4.26579 4.28039 4.41815 4.45240 4.53517 4.61072 4.71035 4.75200 4.79848 4.85342 4.97717 5.00326 5.01947 5.12286 5.20618 5.22550 5.32337 5.37564 5.49760 5.55319 5.67252 5.83768 6.04288 6.68552 6.79759 7.03900 7.27011 7.49816 8.82839 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022690 B = 0.005561 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.753150 B = 5033.921161 C = 5306.438028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.260 3.740 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.004 3.996 7 N -0.931 5.931 8 Si 0.968 3.032 9 H -0.264 1.264 10 H -0.267 1.267 11 H -0.285 1.285 12 C 0.484 3.516 13 O -0.588 6.588 14 C -0.115 4.115 15 C -0.035 4.035 16 C 0.491 3.509 17 O -0.551 6.551 18 O -0.512 6.512 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.103 4.103 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.022 0.978 27 H -0.009 1.009 28 H 0.266 0.734 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.419 0.581 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.115 0.885 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.795 -18.654 1.117 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.342 5.342 3 C 0.138 3.862 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.192 1.192 11 H -0.211 1.211 12 C 0.273 3.727 13 O -0.470 6.470 14 C -0.154 4.154 15 C -0.037 4.037 16 C 0.334 3.666 17 O -0.440 6.440 18 O -0.325 6.325 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.140 4.140 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.119 0.881 26 H 0.040 0.960 27 H 0.009 0.991 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.279 0.721 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.060 -18.515 0.819 21.582 hybrid contribution 1.515 1.296 0.071 1.995 sum -9.545 -17.219 0.890 19.707 Atomic orbital electron populations 1.21987 0.77638 1.04306 1.02691 1.48178 1.08523 1.06223 1.71279 1.18705 0.90858 0.80641 0.95985 1.21734 1.36585 1.06392 0.93017 0.92666 1.25903 0.94950 0.96523 1.02054 1.70068 1.39128 1.14825 1.33078 0.85355 0.77755 0.78548 0.79080 1.18824 1.19205 1.21074 1.21488 0.88087 0.86876 0.76208 1.90739 1.16427 1.87897 1.51904 1.21952 0.97948 0.87648 1.07859 1.21067 0.94596 0.98684 0.89335 1.23706 0.87670 0.69997 0.85187 1.90638 1.18682 1.47861 1.86846 1.84440 1.45801 1.84378 1.17905 1.22411 0.98609 1.00089 0.93856 1.22561 1.00357 0.95540 0.97248 1.22388 1.01899 0.96999 0.94187 1.22286 1.01509 0.90445 0.99781 0.91139 0.91682 0.88083 0.96013 0.99103 0.92466 0.84535 0.85110 0.72071 0.92720 0.93468 0.89650 0.90830 0.87953 0.91941 0.86669 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.13 10.19 127.77 1.30 3.43 16 2 N -0.61 -25.78 2.86 -851.13 -2.43 -28.22 16 3 C 0.26 14.35 5.16 85.64 0.44 14.80 16 4 C -0.54 -31.58 9.39 25.60 0.24 -31.34 16 5 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 6 C 0.00 0.25 5.46 84.65 0.46 0.71 16 7 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 8 Si 0.97 45.75 29.54 68.60 2.03 47.77 16 9 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 C 0.48 19.91 6.82 87.66 0.60 20.51 16 13 O -0.59 -31.06 12.62 2.56 0.03 -31.02 16 14 C -0.11 -2.95 2.89 29.85 0.09 -2.86 16 15 C -0.04 -0.95 0.59 -52.21 -0.03 -0.98 16 16 C 0.49 16.48 4.93 71.24 0.35 16.83 16 17 O -0.55 -23.55 15.93 25.14 0.40 -23.15 16 18 O -0.51 -13.47 13.20 -51.37 -0.68 -14.14 16 19 C -0.11 -3.52 5.03 31.67 0.16 -3.36 16 20 C -0.12 -2.42 6.91 31.88 0.22 -2.20 16 21 C -0.12 -1.77 6.83 31.67 0.22 -1.55 16 22 C -0.10 -1.69 6.10 31.32 0.19 -1.50 16 23 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 25 H 0.10 1.96 6.52 -2.38 -0.02 1.94 16 26 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 27 H -0.01 -0.59 7.42 -2.39 -0.02 -0.61 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.14 2.60 7.55 -2.39 -0.02 2.58 16 30 H 0.13 2.54 8.00 -2.39 -0.02 2.52 16 31 H 0.42 8.20 9.10 -74.05 -0.67 7.53 16 32 H 0.05 2.02 6.81 -2.39 -0.02 2.00 16 33 H 0.05 1.83 6.34 -2.39 -0.02 1.82 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 1.16 7.67 -2.39 -0.02 1.14 16 39 H 0.07 1.20 7.67 -2.39 -0.02 1.18 16 Total: -1.00 -85.70 319.10 4.25 -81.45 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.38 Total: 12.29 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 4.24 Total: 12.48 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.15 Total: -85.68 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: -0.25 Total: -68.32 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -85.70 4.25 -81.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035083149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.980 kcal (2) G-P(sol) polarization free energy of solvation -85.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds