Wall clock time and date at job start Mon Mar 30 2020 05:00:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46497 * 120.00272 * 2 1
4 4 C 1.50706 * 109.46738 * 269.99450 * 3 2 1
5 5 H 1.08001 * 119.99904 * 0.02562 * 4 3 2
6 6 C 1.37879 * 119.99849 * 179.97438 * 4 3 2
7 7 N 1.31516 * 119.99885 * 359.97438 * 6 4 3
8 8 Si 1.86800 * 119.99992 * 180.02562 * 6 4 3
9 9 H 1.48503 * 109.47046 * 359.97438 * 8 6 4
10 10 H 1.48500 * 109.47155 * 119.99804 * 8 6 4
11 11 H 1.48495 * 109.46998 * 240.00262 * 8 6 4
12 12 C 1.34779 * 119.99820 * 179.97438 * 2 1 3
13 13 O 1.21286 * 120.00032 * 180.02562 * 12 2 1
14 14 C 1.50701 * 120.00252 * 0.02562 * 12 2 1
15 15 C 1.53003 * 109.47314 * 182.83431 * 14 12 2
16 16 C 1.50700 * 110.05459 * 56.93448 * 15 14 12
17 17 O 1.20829 * 119.99509 * 232.71539 * 16 15 14
18 18 O 1.34225 * 120.00068 * 52.71550 * 16 15 14
19 19 C 1.54258 * 110.02955 * 295.51607 * 15 14 12
20 20 C 1.54892 * 104.19719 * 264.32335 * 19 15 14
21 21 C 1.54882 * 102.74924 * 322.05942 * 20 19 15
22 22 C 1.53870 * 110.03020 * 178.34958 * 15 14 12
23 23 H 1.08998 * 109.47552 * 270.00355 * 1 2 3
24 24 H 1.08999 * 109.46764 * 30.00863 * 1 2 3
25 25 H 1.09008 * 109.46731 * 150.00062 * 1 2 3
26 26 H 1.08993 * 109.47128 * 29.99058 * 3 2 1
27 27 H 1.08996 * 109.47488 * 149.99759 * 3 2 1
28 28 H 0.96997 * 119.99386 * 180.02562 * 7 6 4
29 29 H 1.08993 * 109.47111 * 62.82904 * 14 12 2
30 30 H 1.09003 * 109.46854 * 302.83660 * 14 12 2
31 31 H 0.96705 * 116.99495 * 179.97438 * 18 16 15
32 32 H 1.09000 * 110.48659 * 145.65028 * 19 15 14
33 33 H 1.09003 * 110.48922 * 23.00261 * 19 15 14
34 34 H 1.09004 * 110.75587 * 80.37712 * 20 19 15
35 35 H 1.09002 * 110.75845 * 203.74442 * 20 19 15
36 36 H 1.09000 * 110.48819 * 156.61755 * 21 20 19
37 37 H 1.08997 * 110.48880 * 279.26180 * 21 20 19
38 38 H 1.08996 * 110.03834 * 359.97438 * 22 15 14
39 39 H 1.09001 * 110.03202 * 238.56578 * 22 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4488 1.7036 -1.4209
5 1 2.0975 1.0959 -2.2417
6 6 3.1262 2.8777 -1.6729
7 7 3.5526 3.6184 -0.6733
8 14 3.4370 3.4172 -3.4341
9 1 2.8602 2.4165 -4.3674
10 1 2.7990 4.7377 -3.6673
11 1 4.8995 3.5258 -3.6677
12 6 2.1389 -1.1672 0.0005
13 8 3.3517 -1.1673 0.0010
14 6 1.3854 -2.4724 0.0005
15 6 2.3780 -3.6344 0.0725
16 6 3.2489 -3.4953 1.2945
17 8 4.4518 -3.5312 1.1864
18 8 2.6882 -3.3315 2.5030
19 6 3.2516 -3.6625 -1.1986
20 6 2.5420 -4.6811 -2.1248
21 6 2.0601 -5.7679 -1.1321
22 6 1.6203 -4.9730 0.1148
23 1 -0.3634 0.0001 1.0276
24 1 -0.3633 0.8899 -0.5140
25 1 -0.3633 -0.8901 -0.5139
26 1 1.6085 2.0283 0.5137
27 1 3.1499 1.1384 0.5138
28 1 4.0288 4.4446 -0.8507
29 1 0.7977 -2.5526 -0.9139
30 1 0.7208 -2.5082 0.8638
31 1 3.2876 -3.2471 3.2572
32 1 4.2601 -4.0012 -0.9609
33 1 3.2789 -2.6776 -1.6647
34 1 1.6953 -4.2179 -2.6315
35 1 3.2429 -5.1007 -2.8465
36 1 1.2177 -6.3194 -1.5495
37 1 2.8760 -6.4465 -0.8837
38 1 0.5455 -4.7948 0.0846
39 1 1.8825 -5.5220 1.0192
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000035083149.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:10
Heat of formation + Delta-G solvation = -165.431884 kcal
Electronic energy + Delta-G solvation = -21844.542857 eV
Core-core repulsion = 18557.520940 eV
Total energy + Delta-G solvation = -3287.021918 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-42.04540 -40.33150 -38.60801 -37.01411 -36.55590 -34.75854 -32.70069 -30.03169
-29.65015 -27.78710 -27.00785 -24.58019 -24.28386 -21.74687 -20.61847 -19.79323
-18.75496 -18.71005 -17.89013 -17.79579 -16.92196 -16.69158 -16.42289 -16.04495
-15.64943 -15.29503 -14.60333 -14.34935 -14.18691 -13.76948 -13.70737 -13.45807
-13.29571 -13.13644 -12.80128 -12.69258 -12.55563 -12.49368 -12.22572 -12.20546
-12.01292 -11.85658 -11.69333 -11.66987 -11.51315 -11.16278 -10.67378 -10.52470
-9.39827 -8.24462 -6.39463 1.33186 1.33865 1.36964 1.48434 1.85522
2.12595 2.31987 2.46708 3.05133 3.40849 3.50128 3.73619 3.89635
4.26579 4.28039 4.41815 4.45240 4.53517 4.61072 4.71035 4.75200
4.79848 4.85342 4.97717 5.00326 5.01947 5.12286 5.20618 5.22550
5.32337 5.37564 5.49760 5.55319 5.67252 5.83768 6.04288 6.68552
6.79759 7.03900 7.27011 7.49816 8.82839
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.022690 B = 0.005561 C = 0.005275
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1233.753150 B = 5033.921161 C = 5306.438028
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.611 5.611
3 C 0.260 3.740
4 C -0.539 4.539
5 H 0.055 0.945
6 C 0.004 3.996
7 N -0.931 5.931
8 Si 0.968 3.032
9 H -0.264 1.264
10 H -0.267 1.267
11 H -0.285 1.285
12 C 0.484 3.516
13 O -0.588 6.588
14 C -0.115 4.115
15 C -0.035 4.035
16 C 0.491 3.509
17 O -0.551 6.551
18 O -0.512 6.512
19 C -0.112 4.112
20 C -0.120 4.120
21 C -0.117 4.117
22 C -0.103 4.103
23 H 0.070 0.930
24 H 0.064 0.936
25 H 0.101 0.899
26 H 0.022 0.978
27 H -0.009 1.009
28 H 0.266 0.734
29 H 0.137 0.863
30 H 0.131 0.869
31 H 0.419 0.581
32 H 0.054 0.946
33 H 0.046 0.954
34 H 0.085 0.915
35 H 0.073 0.927
36 H 0.102 0.898
37 H 0.062 0.938
38 H 0.115 0.885
39 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.795 -18.654 1.117 22.098
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 N -0.342 5.342
3 C 0.138 3.862
4 C -0.577 4.577
5 H 0.073 0.927
6 C -0.194 4.194
7 N -0.571 5.571
8 Si 0.793 3.207
9 H -0.188 1.188
10 H -0.192 1.192
11 H -0.211 1.211
12 C 0.273 3.727
13 O -0.470 6.470
14 C -0.154 4.154
15 C -0.037 4.037
16 C 0.334 3.666
17 O -0.440 6.440
18 O -0.325 6.325
19 C -0.150 4.150
20 C -0.157 4.157
21 C -0.155 4.155
22 C -0.140 4.140
23 H 0.089 0.911
24 H 0.083 0.917
25 H 0.119 0.881
26 H 0.040 0.960
27 H 0.009 0.991
28 H 0.075 0.925
29 H 0.155 0.845
30 H 0.149 0.851
31 H 0.279 0.721
32 H 0.073 0.927
33 H 0.065 0.935
34 H 0.104 0.896
35 H 0.092 0.908
36 H 0.120 0.880
37 H 0.081 0.919
38 H 0.133 0.867
39 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -11.060 -18.515 0.819 21.582
hybrid contribution 1.515 1.296 0.071 1.995
sum -9.545 -17.219 0.890 19.707
Atomic orbital electron populations
1.21987 0.77638 1.04306 1.02691 1.48178 1.08523 1.06223 1.71279
1.18705 0.90858 0.80641 0.95985 1.21734 1.36585 1.06392 0.93017
0.92666 1.25903 0.94950 0.96523 1.02054 1.70068 1.39128 1.14825
1.33078 0.85355 0.77755 0.78548 0.79080 1.18824 1.19205 1.21074
1.21488 0.88087 0.86876 0.76208 1.90739 1.16427 1.87897 1.51904
1.21952 0.97948 0.87648 1.07859 1.21067 0.94596 0.98684 0.89335
1.23706 0.87670 0.69997 0.85187 1.90638 1.18682 1.47861 1.86846
1.84440 1.45801 1.84378 1.17905 1.22411 0.98609 1.00089 0.93856
1.22561 1.00357 0.95540 0.97248 1.22388 1.01899 0.96999 0.94187
1.22286 1.01509 0.90445 0.99781 0.91139 0.91682 0.88083 0.96013
0.99103 0.92466 0.84535 0.85110 0.72071 0.92720 0.93468 0.89650
0.90830 0.87953 0.91941 0.86669 0.90799
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 2.13 10.19 127.77 1.30 3.43 16
2 N -0.61 -25.78 2.86 -851.13 -2.43 -28.22 16
3 C 0.26 14.35 5.16 85.64 0.44 14.80 16
4 C -0.54 -31.58 9.39 25.60 0.24 -31.34 16
5 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16
6 C 0.00 0.25 5.46 84.65 0.46 0.71 16
7 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16
8 Si 0.97 45.75 29.54 68.60 2.03 47.77 16
9 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16
10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16
11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16
12 C 0.48 19.91 6.82 87.66 0.60 20.51 16
13 O -0.59 -31.06 12.62 2.56 0.03 -31.02 16
14 C -0.11 -2.95 2.89 29.85 0.09 -2.86 16
15 C -0.04 -0.95 0.59 -52.21 -0.03 -0.98 16
16 C 0.49 16.48 4.93 71.24 0.35 16.83 16
17 O -0.55 -23.55 15.93 25.14 0.40 -23.15 16
18 O -0.51 -13.47 13.20 -51.37 -0.68 -14.14 16
19 C -0.11 -3.52 5.03 31.67 0.16 -3.36 16
20 C -0.12 -2.42 6.91 31.88 0.22 -2.20 16
21 C -0.12 -1.77 6.83 31.67 0.22 -1.55 16
22 C -0.10 -1.69 6.10 31.32 0.19 -1.50 16
23 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
24 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16
25 H 0.10 1.96 6.52 -2.38 -0.02 1.94 16
26 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16
27 H -0.01 -0.59 7.42 -2.39 -0.02 -0.61 16
28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16
29 H 0.14 2.60 7.55 -2.39 -0.02 2.58 16
30 H 0.13 2.54 8.00 -2.39 -0.02 2.52 16
31 H 0.42 8.20 9.10 -74.05 -0.67 7.53 16
32 H 0.05 2.02 6.81 -2.39 -0.02 2.00 16
33 H 0.05 1.83 6.34 -2.39 -0.02 1.82 16
34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16
36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16
37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
38 H 0.11 1.16 7.67 -2.39 -0.02 1.14 16
39 H 0.07 1.20 7.67 -2.39 -0.02 1.18 16
Total: -1.00 -85.70 319.10 4.25 -81.45
By element:
Atomic # 1 Polarization: 11.91 SS G_CDS: 0.38 Total: 12.29 kcal
Atomic # 6 Polarization: 8.24 SS G_CDS: 4.24 Total: 12.48 kcal
Atomic # 7 Polarization: -83.53 SS G_CDS: -2.15 Total: -85.68 kcal
Atomic # 8 Polarization: -68.08 SS G_CDS: -0.25 Total: -68.32 kcal
Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal
Total: -85.70 4.25 -81.45 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000035083149.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.980 kcal
(2) G-P(sol) polarization free energy of solvation -85.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.684 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -165.432 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds