Wall clock time and date at job start Mon Mar 30 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 N 1.46899 * 109.47229 * 180.02562 * 3 2 1 5 5 C 1.46898 * 111.00089 * 170.00458 * 4 3 2 6 6 C 1.53238 * 109.34020 * 172.74905 * 5 4 3 7 7 N 1.47074 * 108.52374 * 53.82300 * 6 5 4 8 8 C 1.34781 * 120.87798 * 128.79619 * 7 6 5 9 9 O 1.21438 * 120.00171 * 351.86771 * 8 7 6 10 10 C 1.48838 * 119.99789 * 171.87138 * 8 7 6 11 11 O 1.21497 * 119.99705 * 353.24233 * 10 8 7 12 12 N 1.34770 * 119.99840 * 173.24233 * 10 8 7 13 13 C 1.36119 * 119.99806 * 180.02562 * 12 10 8 14 14 H 1.08000 * 120.00411 * 0.02562 * 13 12 10 15 15 C 1.39589 * 119.99952 * 180.02562 * 13 12 10 16 16 N 1.31016 * 120.00055 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00083 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47512 * 90.00097 * 17 15 13 19 19 H 1.48509 * 109.47313 * 210.00080 * 17 15 13 20 20 H 1.48498 * 109.47164 * 329.99951 * 17 15 13 21 21 C 1.47080 * 118.23910 * 308.81839 * 7 6 5 22 22 C 1.46899 * 111.00045 * 45.69926 * 4 3 2 23 23 H 1.08993 * 109.47326 * 60.00132 * 1 2 3 24 24 H 1.09002 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47048 * 299.99198 * 1 2 3 26 26 H 1.09003 * 109.47091 * 240.00260 * 2 1 3 27 27 H 1.09000 * 109.47271 * 120.00228 * 2 1 3 28 28 H 1.09003 * 109.46987 * 60.00196 * 3 2 1 29 29 H 1.09000 * 109.47296 * 300.00213 * 3 2 1 30 30 H 1.08994 * 109.49454 * 52.78266 * 5 4 3 31 31 H 1.08999 * 109.48822 * 292.70219 * 5 4 3 32 32 H 1.08997 * 109.62720 * 173.53957 * 6 5 4 33 33 H 1.09001 * 109.62492 * 293.92212 * 6 5 4 34 34 H 0.97005 * 120.00261 * 0.02562 * 12 10 8 35 35 H 0.96996 * 120.00559 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.62812 * 170.89196 * 21 7 6 37 37 H 1.08999 * 109.62916 * 291.47231 * 21 7 6 38 38 H 1.08999 * 109.49282 * 67.29502 * 22 4 3 39 39 H 1.09002 * 109.51213 * 307.22828 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0353 2.7933 -0.2387 6 6 5.5563 2.7853 -0.0526 7 7 6.1265 1.7355 -0.9104 8 6 7.1445 2.0063 -1.7511 9 8 7.5056 3.1537 -1.9177 10 6 7.8261 0.8990 -2.4754 11 8 7.5495 -0.2558 -2.2185 12 7 8.7500 1.1774 -3.4163 13 6 9.3730 0.1648 -4.0791 14 1 9.1266 -0.8618 -3.8513 15 6 10.3303 0.4531 -5.0531 16 7 10.6289 1.6984 -5.3298 17 14 11.1858 -0.9366 -5.9622 18 1 10.4107 -1.2819 -7.1809 19 1 12.5531 -0.5063 -6.3506 20 1 11.2737 -2.1263 -5.0779 21 6 5.5560 0.3824 -0.8267 22 6 4.0351 0.4849 -0.9825 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.5858 3.4889 0.4698 31 1 3.7949 3.1032 -1.2557 32 1 5.9652 3.7543 -0.3388 33 1 5.7965 2.5802 0.9907 34 1 8.9711 2.0995 -3.6211 35 1 11.2944 1.8988 -6.0064 36 1 5.9648 -0.2373 -1.6248 37 1 5.7962 -0.0571 0.1414 38 1 3.7947 0.8270 -1.9891 39 1 3.5854 -0.4935 -0.8138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037243538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:45 Heat of formation + Delta-G solvation = -52.748047 kcal Electronic energy + Delta-G solvation = -21005.545850 eV Core-core repulsion = 17755.703022 eV Total energy + Delta-G solvation = -3249.842829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03366 -38.43498 -37.11736 -35.34491 -34.22511 -32.64209 -31.45207 -30.91249 -28.03543 -25.97165 -24.75252 -23.68419 -22.82532 -21.01092 -20.28586 -18.90833 -18.08775 -16.60320 -16.33680 -15.53986 -15.24035 -15.18637 -14.91681 -14.85684 -14.38128 -14.10635 -13.91087 -13.29506 -13.22953 -12.99313 -12.46680 -12.37098 -11.94820 -11.84326 -11.64183 -11.62078 -11.25988 -11.09336 -11.03051 -10.94116 -10.54316 -10.52113 -10.44181 -10.13022 -9.72596 -8.54827 -8.29407 -8.10244 -7.95365 -6.71507 -4.03975 2.41313 3.12421 3.13094 3.18180 3.30172 3.85069 4.02232 4.22903 4.70015 4.76271 4.83520 5.03866 5.12548 5.14907 5.19188 5.33145 5.34528 5.45604 5.51425 5.56615 5.62026 5.75393 5.80904 5.86227 5.92942 5.99501 6.05580 6.07588 6.26532 6.58503 6.87855 7.00377 7.09198 7.27337 7.67931 7.81362 8.29493 8.58051 8.91664 9.27124 9.80351 10.43003 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031267 B = 0.004036 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.296808 B = 6935.422076 C = 7555.978171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.045 3.955 6 C 0.114 3.886 7 N -0.596 5.596 8 C 0.515 3.485 9 O -0.550 6.550 10 C 0.392 3.608 11 O -0.587 6.587 12 N -0.494 5.494 13 C -0.306 4.306 14 H 0.114 0.886 15 C 0.032 3.968 16 N -0.867 5.867 17 Si 0.940 3.060 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.264 1.264 21 C 0.082 3.918 22 C 0.033 3.967 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.405 0.595 35 H 0.281 0.719 36 H 0.153 0.847 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.550 -0.550 8.080 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.084 4.084 6 C -0.009 4.009 7 N -0.331 5.331 8 C 0.302 3.698 9 O -0.427 6.427 10 C 0.178 3.822 11 O -0.477 6.477 12 N -0.127 5.127 13 C -0.437 4.437 14 H 0.132 0.868 15 C -0.176 4.176 16 N -0.504 5.504 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.188 1.188 21 C -0.040 4.040 22 C -0.095 4.095 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.240 0.760 35 H 0.092 0.908 36 H 0.170 0.830 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.211 -0.698 8.470 16.559 hybrid contribution 0.141 0.361 -1.222 1.282 sum -14.070 -0.337 7.248 15.831 Atomic orbital electron populations 1.21731 0.95655 1.01738 1.01672 1.21714 0.95577 0.96559 1.02952 1.22160 0.87402 0.97167 1.00518 1.62089 1.07031 1.07142 1.50267 1.22443 0.95585 0.90297 1.00066 1.21639 0.91652 0.92986 0.94651 1.47858 1.33890 1.11328 1.39991 1.20638 0.80061 0.89536 0.79595 1.90670 1.65037 1.22471 1.64549 1.18919 0.87667 0.88419 0.87245 1.90283 1.66994 1.20855 1.69594 1.41592 1.30878 1.11015 1.29205 1.19909 1.17807 0.90136 1.15854 0.86804 1.25616 0.96954 0.97808 0.97194 1.69483 1.31336 1.18391 1.31233 0.85707 0.78179 0.80168 0.79433 1.19867 1.20498 1.18813 1.22963 0.90578 0.83928 1.06520 1.22762 0.96620 0.96909 0.93188 0.92919 0.92537 0.92733 0.91397 0.90967 0.90877 0.95139 0.89967 0.94470 0.88893 0.91087 0.75961 0.90827 0.83005 0.91713 0.94740 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.19 5.19 -26.73 -0.14 -1.33 16 3 C 0.06 0.57 5.27 -3.82 -0.02 0.55 16 4 N -0.54 -6.84 4.78 -234.32 -1.12 -7.96 16 5 C 0.04 0.58 5.58 -3.70 -0.02 0.55 16 6 C 0.11 1.73 6.62 -3.61 -0.02 1.70 16 7 N -0.60 -11.07 3.01 -173.21 -0.52 -11.59 16 8 C 0.52 11.55 7.73 -11.87 -0.09 11.46 16 9 O -0.55 -13.19 15.95 5.42 0.09 -13.10 16 10 C 0.39 9.78 7.67 -11.88 -0.09 9.69 16 11 O -0.59 -14.97 12.76 5.37 0.07 -14.91 16 12 N -0.49 -13.07 5.24 -11.59 -0.06 -13.13 16 13 C -0.31 -8.28 9.67 -15.15 -0.15 -8.43 16 14 H 0.11 3.11 7.15 -52.49 -0.38 2.74 16 15 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 16 N -0.87 -22.99 13.03 55.53 0.72 -22.27 16 17 Si 0.94 19.75 29.56 -169.99 -5.02 14.73 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 21 C 0.08 1.39 6.09 -3.60 -0.02 1.37 16 22 C 0.03 0.46 5.04 -3.70 -0.02 0.45 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.65 6.18 -51.93 -0.32 0.33 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.47 7.04 -51.93 -0.37 1.10 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 10.88 7.37 -40.82 -0.30 10.58 16 35 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 36 H 0.15 3.00 4.45 -54.23 -0.24 2.76 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 1.10 5.73 -51.93 -0.30 0.80 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -29.10 315.61 -7.07 -36.17 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.68 Total: 11.34 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: -0.30 Total: 15.97 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.98 Total: -54.95 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: 0.15 Total: -28.01 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.10 -7.07 -36.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.575 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds