Wall clock time and date at job start Mon Mar 30 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 N 1.46899 * 109.47229 * 180.02562 * 3 2 1 5 5 C 1.46898 * 111.00089 * 170.00458 * 4 3 2 6 6 C 1.53238 * 109.34020 * 172.74905 * 5 4 3 7 7 N 1.47074 * 108.52374 * 53.82300 * 6 5 4 8 8 C 1.34781 * 120.87798 * 128.79619 * 7 6 5 9 9 O 1.21438 * 120.00171 * 351.86771 * 8 7 6 10 10 C 1.48838 * 119.99789 * 171.87138 * 8 7 6 11 11 O 1.21497 * 119.99705 * 353.24233 * 10 8 7 12 12 N 1.34770 * 119.99840 * 173.24233 * 10 8 7 13 13 C 1.36119 * 119.99806 * 180.02562 * 12 10 8 14 14 H 1.08000 * 120.00411 * 0.02562 * 13 12 10 15 15 C 1.39589 * 119.99952 * 180.02562 * 13 12 10 16 16 N 1.31016 * 120.00055 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00083 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47512 * 90.00097 * 17 15 13 19 19 H 1.48509 * 109.47313 * 210.00080 * 17 15 13 20 20 H 1.48498 * 109.47164 * 329.99951 * 17 15 13 21 21 C 1.47080 * 118.23910 * 308.81839 * 7 6 5 22 22 C 1.46899 * 111.00045 * 45.69926 * 4 3 2 23 23 H 1.08993 * 109.47326 * 60.00132 * 1 2 3 24 24 H 1.09002 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47048 * 299.99198 * 1 2 3 26 26 H 1.09003 * 109.47091 * 240.00260 * 2 1 3 27 27 H 1.09000 * 109.47271 * 120.00228 * 2 1 3 28 28 H 1.09003 * 109.46987 * 60.00196 * 3 2 1 29 29 H 1.09000 * 109.47296 * 300.00213 * 3 2 1 30 30 H 1.08994 * 109.49454 * 52.78266 * 5 4 3 31 31 H 1.08999 * 109.48822 * 292.70219 * 5 4 3 32 32 H 1.08997 * 109.62720 * 173.53957 * 6 5 4 33 33 H 1.09001 * 109.62492 * 293.92212 * 6 5 4 34 34 H 0.97005 * 120.00261 * 0.02562 * 12 10 8 35 35 H 0.96996 * 120.00559 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.62812 * 170.89196 * 21 7 6 37 37 H 1.08999 * 109.62916 * 291.47231 * 21 7 6 38 38 H 1.08999 * 109.49282 * 67.29502 * 22 4 3 39 39 H 1.09002 * 109.51213 * 307.22828 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0353 2.7933 -0.2387 6 6 5.5563 2.7853 -0.0526 7 7 6.1265 1.7355 -0.9104 8 6 7.1445 2.0063 -1.7511 9 8 7.5056 3.1537 -1.9177 10 6 7.8261 0.8990 -2.4754 11 8 7.5495 -0.2558 -2.2185 12 7 8.7500 1.1774 -3.4163 13 6 9.3730 0.1648 -4.0791 14 1 9.1266 -0.8618 -3.8513 15 6 10.3303 0.4531 -5.0531 16 7 10.6289 1.6984 -5.3298 17 14 11.1858 -0.9366 -5.9622 18 1 10.4107 -1.2819 -7.1809 19 1 12.5531 -0.5063 -6.3506 20 1 11.2737 -2.1263 -5.0779 21 6 5.5560 0.3824 -0.8267 22 6 4.0351 0.4849 -0.9825 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.5858 3.4889 0.4698 31 1 3.7949 3.1032 -1.2557 32 1 5.9652 3.7543 -0.3388 33 1 5.7965 2.5802 0.9907 34 1 8.9711 2.0995 -3.6211 35 1 11.2944 1.8988 -6.0064 36 1 5.9648 -0.2373 -1.6248 37 1 5.7962 -0.0571 0.1414 38 1 3.7947 0.8270 -1.9891 39 1 3.5854 -0.4935 -0.8138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037243538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:45 Heat of formation + Delta-G solvation = -74.022151 kcal Electronic energy + Delta-G solvation = -21006.468365 eV Core-core repulsion = 17755.703022 eV Total energy + Delta-G solvation = -3250.765343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.67778 -39.85544 -38.89696 -36.82939 -35.94261 -33.76863 -33.36822 -32.13004 -29.28779 -27.76720 -25.95398 -24.90518 -24.33092 -22.17452 -21.48058 -20.68393 -19.88948 -18.31996 -17.95445 -17.00054 -16.84622 -16.33918 -16.24267 -15.97769 -15.91029 -15.66062 -15.38535 -14.89777 -14.72760 -14.11618 -13.83894 -13.71051 -13.39483 -12.99271 -12.90399 -12.72016 -12.63472 -12.55218 -12.35546 -12.19602 -12.09589 -11.92337 -11.72117 -11.60343 -11.37090 -10.29594 -9.89595 -9.82396 -9.30365 -8.66749 -6.11341 0.56175 1.41136 1.47172 1.55572 1.71142 2.26726 2.32136 2.83576 3.07214 3.15414 3.79416 3.91134 3.95185 4.01393 4.10728 4.24718 4.31839 4.39334 4.43676 4.56835 4.70132 4.71775 4.77452 4.89793 4.91471 4.97040 5.12617 5.22028 5.26096 5.31267 5.41021 5.43242 5.67505 5.96910 6.01202 6.18501 6.32739 6.75783 6.95125 7.26512 7.78744 8.48955 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031267 B = 0.004036 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.296808 B = 6935.422076 C = 7555.978171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.056 3.944 4 N -0.542 5.542 5 C 0.051 3.949 6 C 0.109 3.891 7 N -0.586 5.586 8 C 0.514 3.486 9 O -0.571 6.571 10 C 0.389 3.611 11 O -0.597 6.597 12 N -0.508 5.508 13 C -0.343 4.343 14 H 0.103 0.897 15 C -0.005 4.005 16 N -0.897 5.897 17 Si 1.011 2.989 18 H -0.264 1.264 19 H -0.269 1.269 20 H -0.262 1.262 21 C 0.081 3.919 22 C 0.044 3.956 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.029 0.971 30 H 0.115 0.885 31 H 0.025 0.975 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.399 0.601 35 H 0.289 0.711 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.021 0.979 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.986 -1.006 8.958 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.071 4.071 4 N -0.267 5.267 5 C -0.078 4.078 6 C -0.013 4.013 7 N -0.319 5.319 8 C 0.299 3.701 9 O -0.451 6.451 10 C 0.175 3.825 11 O -0.487 6.487 12 N -0.141 5.141 13 C -0.473 4.473 14 H 0.121 0.879 15 C -0.210 4.210 16 N -0.534 5.534 17 Si 0.832 3.168 18 H -0.189 1.189 19 H -0.193 1.193 20 H -0.186 1.186 21 C -0.040 4.040 22 C -0.084 4.084 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.133 0.867 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.696 -1.160 9.382 18.323 hybrid contribution 0.468 0.517 -1.373 1.540 sum -15.229 -0.643 8.008 17.218 Atomic orbital electron populations 1.21701 0.94340 1.02314 1.02095 1.21693 0.96711 0.95670 1.02545 1.22253 0.85469 0.98149 1.01234 1.62105 1.08731 1.06593 1.49278 1.22430 0.93740 0.91175 1.00435 1.21931 0.93276 0.91440 0.94631 1.47995 1.32257 1.12930 1.38749 1.20199 0.81064 0.88416 0.80381 1.90653 1.66142 1.22695 1.65654 1.19498 0.87104 0.89178 0.86730 1.90301 1.67130 1.21588 1.69689 1.41692 1.31713 1.10599 1.30130 1.20023 1.19673 0.89864 1.17702 0.87919 1.26575 0.96777 1.00454 0.97171 1.69555 1.31865 1.20198 1.31802 0.84676 0.77292 0.76796 0.78056 1.18901 1.19309 1.18606 1.22874 0.92709 0.82720 1.05740 1.22617 0.94228 0.98581 0.93009 0.92931 0.91951 0.91874 0.92156 0.90980 0.89216 0.95240 0.86668 0.95648 0.89589 0.89243 0.76636 0.90097 0.85834 0.90749 0.96027 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.13 -2.01 5.19 30.60 0.16 -1.85 16 3 C 0.06 0.98 5.27 86.30 0.45 1.44 16 4 N -0.54 -12.31 4.78 -895.26 -4.28 -16.59 16 5 C 0.05 1.18 5.58 86.38 0.48 1.66 16 6 C 0.11 3.13 6.62 86.35 0.57 3.70 16 7 N -0.59 -21.57 3.01 -820.23 -2.47 -24.04 16 8 C 0.51 23.52 7.73 87.08 0.67 24.19 16 9 O -0.57 -28.01 15.95 -3.52 -0.06 -28.07 16 10 C 0.39 20.05 7.67 87.08 0.67 20.72 16 11 O -0.60 -31.33 12.76 -3.70 -0.05 -31.38 16 12 N -0.51 -27.97 5.24 -308.88 -1.62 -29.59 16 13 C -0.34 -19.10 9.67 84.35 0.82 -18.28 16 14 H 0.10 5.81 7.15 -2.91 -0.02 5.79 16 15 C -0.01 -0.28 5.51 85.14 0.47 0.19 16 16 N -0.90 -48.23 13.03 21.77 0.28 -47.95 16 17 Si 1.01 40.40 29.56 68.60 2.03 42.43 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 C 0.08 2.71 6.09 86.35 0.53 3.23 16 22 C 0.04 1.16 5.04 86.38 0.44 1.60 16 23 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 1.03 6.18 -2.39 -0.01 1.01 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.03 0.54 8.08 -2.39 -0.02 0.52 16 30 H 0.12 1.97 8.11 -2.39 -0.02 1.95 16 31 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 2.63 7.04 -2.39 -0.02 2.61 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.40 22.42 7.37 -92.70 -0.68 21.73 16 35 H 0.29 14.22 8.30 -92.71 -0.77 13.45 16 36 H 0.12 4.97 4.45 -38.73 -0.17 4.79 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.11 2.49 5.73 -2.39 -0.01 2.47 16 Total: -1.00 -63.58 315.61 0.03 -63.56 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: 0.22 Total: 36.14 kcal Atomic # 6 Polarization: 29.53 SS G_CDS: 5.97 Total: 35.50 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -8.08 Total: -118.17 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -0.10 Total: -59.45 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -63.58 0.03 -63.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.466 kcal (2) G-P(sol) polarization free energy of solvation -63.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds